Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002224

Physical Location & Seq

Genomic Coordinates Reverse (-)

6673689 .. 6676521

Gene Structure 2833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G19270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGCTGAAATTTGGTTCTTGGTTGTACCAATCCTCATCTTATGCTTGCTTTTGGTAAGAGTGATTGTTTCAAAGAAGAAAAAGAACAGTAGAGGTAAGCTTCCTCCTGGTTCCATGGGATGGCCTTACTTAGGAGAGACTCTACAACTCTATTCACAAAACCCCAATGTTTTCTTCACCTCCAAGCAAAAGAGATATGGAGAGATATTCAAAACCCGAATCCTCGGCTATCCATGCGTGATGTTGGCTAGCCCTGAGGCTGCGAGGTTTGTACTTGTGACTCATGCCCATATGTTCAAACCAACTTATCCGAGAAGCAAAGAGAAGCTGATAGGACCCTCTGCACTCTTTTTCCACCAAGGAGATTATCATTCCCATATAAGGAAACTTGTTCAATCCTCTTTCTACCCTGAAACCATCCGTAAACTCATCCCTGATATCGAGCACATTGCCCTTTCTTCCTTACAATCTTGGGCCAATATGCCGATTGTCTCCACCTACCAGGAGATGAAGAAGTTCGCCTTTGATGTGGGTATTCTAGCCATATTTGGACATTTGGAGAGTTCTTACAAAGAGATCTTGAAACATAACTACAATATTGTGGACAAAGGCTACAACTCTTTCCCCATGAGTCTCCCCGGAACATCTTATCACAAAGCTCTCATGGCGAGAAAGCAGCTAAAGACGATAGTAAGCGAGATTATATGCGAAAGAAGAGAGAAAAGGGCCTTGCAAACGGACTTTCTTGGTCATCTACTCAACTTCAAGAACGAAAAAGGTCGTGTGCTAACCCAAGAACAGATTGCAGACAACATCATCGGAGTCCTTTTCGCCGCACAGGACACGACAGCTAGTTGCTTAACTTGGATTCTTAAGTACTTACATGATGATCAGAAACTTCTAGAAGCTGTTAAGGCTGAGCAAAAGGCTATATATGAAGAAAACAGTAGAGAGAAGAAACCTTTAACATGGAGACAAACGAGGAATATGCCACTGACACATAAGGTTATAGTTGAAAGCTTGAGGATGGCAAGCATCATATCCTTCACATTCAGAGAAGCAGTGGTTGATGTTGAATATAAGGGATATTTGATACCTAAGGGATGGAAAGTGATGCCACTGTTTCGGAATATTCATCACAATCCGAAATATTTTTCAAACCCTGAGGTTTTCGACCCATCTAGATTCGAGGTAAATCCGAAGCCGAATACATTCATGCCTTTTGGAAGTGGAGTTCATGCTTGTCCCGGGAACGAACTCGCCAAGTTACAAATTCTTATATTTCTCCACCATTTAGTTTCCAATTTCCGGTATGTTTTCCATGCACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010295 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

443

Amino Acids

51.2

Weight (kDa)

9.64

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	35 - 438	3.2e-75	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19270 AT3G19270
fragaria_vesca	FvH4_2g06010 FvH4_2g34420
malus_domestica	MD02G1171600.v1.1 MD05G1081400.v1.1 MD08G1101400.v1.1 MD15G1082600.v1.1 MD15G1283400.v1.1
prunus_persica	Prupe.1G435300_v2.0.a1 Prupe.7G133800_v2.0.a1 Prupe.8G125800_v2.0.a1
pyrus_communis	pycom02g13830 pycom05g07510 pycom08g08190 pycom15g07740
rosa_chinensis	RchiOBHm_Chr2g0105591 RchiOBHm_Chr6g0257401 RchiOBHm_Chr6g0307951
rosa_laevigata	RLG00000010684 RLG00000014690 RLG00000017443
rosa_multiflora	Rmu_sc0000820.1_g000025 Rmu_sc0003252.1_g000022
rosa_roxburghii	Rroxscaffold_2G00138090 Rroxscaffold_7G00160740 Rroxscaffold_7G00208630
rosa_rugosa	Rorug02G0128400 Rorug02G0128500 Rorug05G0573200 Rorug06G0362000
rosa_samantha	Rh2AG180300 Rh2CG184500 Rh2DG186100 Rh6AG090500 Rh6AG471000 Rh6BG482000 Rh6CG078300 Rh6CG487400 Rh6DG074100 Rh6DG473500
rosa_wichuraiana	Rw6G007900 Rw6G041130

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	120
AciI	CCGC	1 cut(s)	834
AcsI	RAATTY	2 cut(s)	9, 1272
AfaI	GTAC	3 cut(s)	27, 273, 878
AfiI	CCNNNNNNNGG	4 cut(s)	120, 131, 381, 1308
AflII	CTTAAG	1 cut(s)	872
AgsI	TTSAA	9 cut(s)	72, 211, 298, 395, 583, 766, 1016, 1076, 1158
AjnI	CCWGG	2 cut(s)	106, 501
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AloI	GAACNNNNNNTCC	2 cut(s)	1218, 1250
AluBI	AGCT	7 cut(s)	100, 328, 659, 679, 851, 908, 1020
AluI	AGCT	7 cut(s)	100, 328, 659, 679, 851, 908, 1020
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	4 cut(s)	131, 496, 638, 967
Ama87I	CYCGRG	1 cut(s)	1247
AoxI	GGCC	3 cut(s)	122, 474, 726
ApeKI	GCWGC	2 cut(s)	260, 676
ApoI	RAATTY	2 cut(s)	9, 1272
Asp700I	GAANNNNTTC	2 cut(s)	515, 1211
AspS9I	GGNCC	3 cut(s)	335, 474, 726
AsuC2I	CCSGG	3 cut(s)	639, 1248, 1249
AsuHPI	GGTGA	1 cut(s)	169
AsuNHI	GCTAGC	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	1247
AvaII	GGWCC	1 cut(s)	335
AxyI	CCTNAGG	3 cut(s)	255, 1098, 1164
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	247, 688
BccI	CCATC	5 cut(s)	114, 425, 1021, 1098, 1186
BcgI	CGANNNNNNTGC	4 cut(s)	431, 465, 970, 1004
BciT130I	CCWGG	2 cut(s)	108, 503
BclI	TGATCA	1 cut(s)	889
BcnI	CCSGG	3 cut(s)	639, 1248, 1249
BcoDI	GTCTC	4 cut(s)	131, 496, 638, 967
BfaI	CTAG	5 cut(s)	249, 539, 852, 902, 1182
BfrI	CTTAAG	1 cut(s)	872
BglII	AGATCT	1 cut(s)	576
BisI	GCNGC	3 cut(s)	261, 677, 834
BlpI	GCTNAGC	1 cut(s)	918
BlsI	GCNGC	3 cut(s)	262, 678, 835
BmcAI	AGTACT	1 cut(s)	878
Bme1390I	CCNGG	5 cut(s)	108, 503, 639, 1248, 1249
Bme18I	GGWCC	1 cut(s)	335
BmeT110I	CYCGRG	1 cut(s)	1247
BmgT120I	GGNCC	3 cut(s)	335, 474, 726
BmiI	GGNNCC	2 cut(s)	112, 337
BmrFI	CCNGG	5 cut(s)	108, 503, 639, 1248, 1249
BmsI	GCATC	2 cut(s)	1044, 1104
BmtI	GCTAGC	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	918
BpuEI	CTTGAG	1 cut(s)	1042
BpuMI	CCSGG	3 cut(s)	639, 1248, 1249
BsaJI	CCNNGG	5 cut(s)	114, 223, 358, 637, 1247
BsaWI	WCCGGW	1 cut(s)	1308
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 131, 381, 1308
Bse21I	CCTNAGG	3 cut(s)	255, 1098, 1164
Bse3DI	GCAATG	1 cut(s)	447
BseBI	CCWGG	2 cut(s)	108, 503
BseDI	CCNNGG	5 cut(s)	114, 223, 358, 637, 1247
BseGI	GGATG	5 cut(s)	125, 417, 429, 1032, 1109
BseLI	CCNNNNNNNGG	4 cut(s)	120, 131, 381, 1308
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	3 cut(s)	246, 909, 1155
BseXI	GCAGC	2 cut(s)	247, 688
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	3 cut(s)	124, 476, 728
BsiHKAI	GWGCWC	1 cut(s)	447
BsiHKCI	CYCGRG	1 cut(s)	1247
BsiSI	CCGG	3 cut(s)	639, 1248, 1309
BslFI	GGGAC	1 cut(s)	1230
BslI	CCNNNNNNNGG	4 cut(s)	120, 131, 381, 1308
BsmAI	GTCTC	4 cut(s)	131, 496, 638, 967
BsmFI	GGGAC	1 cut(s)	1230
BsnI	GGCC	3 cut(s)	124, 476, 728
BsoBI	CYCGRG	1 cut(s)	1247
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	2 cut(s)	576, 889
Bsp1720I	GCTNAGC	1 cut(s)	918
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	1 cut(s)	834
BspANI	GGCC	3 cut(s)	124, 476, 728
BspCNI	CTCAG	3 cut(s)	247, 910, 1156
BspLI	GGNNCC	2 cut(s)	112, 337
BspOI	GCTAGC	1 cut(s)	252
BspTI	CTTAAG	1 cut(s)	872
BsrDI	GCAATG	1 cut(s)	447
BssECI	CCNNGG	5 cut(s)	114, 223, 358, 637, 1247
BssMI	GATC	2 cut(s)	576, 889
BssT1I	CCWWGG	2 cut(s)	114, 358
Bst2UI	CCWGG	2 cut(s)	108, 503
Bst4CI	ACNGT	3 cut(s)	89, 947, 1122
Bst6I	CTCTTC	1 cut(s)	709
BstAFI	CTTAAG	1 cut(s)	872
BstC8I	GCNNGC	3 cut(s)	47, 250, 1033
BstDEI	CTNAG	5 cut(s)	130, 255, 918, 1098, 1164
BstDSI	CCRYGG	1 cut(s)	114
BstENI	CCTNNNNNAGG	1 cut(s)	129
BstF5I	GGATG	5 cut(s)	125, 417, 429, 1032, 1109
BstKTI	GATC	2 cut(s)	579, 892
BstMAI	GTCTC	4 cut(s)	131, 496, 638, 967
BstMBI	GATC	2 cut(s)	576, 889
BstMWI	GCNNNNNNNGC	3 cut(s)	234, 665, 914
BstNI	CCWGG	2 cut(s)	108, 503
BstSCI	CCNGG	5 cut(s)	106, 501, 637, 1246, 1247
BstV1I	GCAGC	2 cut(s)	247, 688
BstX2I	RGATCY	1 cut(s)	576
BstYI	RGATCY	1 cut(s)	576
Bsu36I	CCTNAGG	3 cut(s)	255, 1098, 1164
BsuRI	GGCC	3 cut(s)	124, 476, 728
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	5 cut(s)	125, 417, 429, 1032, 1109
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	3 cut(s)	992, 1068, 1118
Cac8I	GCNNGC	3 cut(s)	47, 250, 1033
Cfr13I	GGNCC	3 cut(s)	335, 474, 726
Cfr9I	CCCGGG	1 cut(s)	1247
Csp6I	GTAC	3 cut(s)	26, 272, 877
CviQI	GTAC	3 cut(s)	26, 272, 877
DdeI	CTNAG	5 cut(s)	130, 255, 918, 1098, 1164
DpnI	GATC	2 cut(s)	578, 891
DpnII	GATC	2 cut(s)	576, 889
Eam1104I	CTCTTC	1 cut(s)	709
EarI	CTCTTC	1 cut(s)	709
Eco130I	CCWWGG	2 cut(s)	114, 358
Eco32I	GATATC	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	335
Eco81I	CCTNAGG	3 cut(s)	255, 1098, 1164
Eco88I	CYCGRG	1 cut(s)	1247
EcoNI	CCTNNNNNAGG	1 cut(s)	129
EcoO109I	RGGNCCY	2 cut(s)	335, 726
EcoRII	CCWGG	2 cut(s)	106, 501
EcoRV	GATATC	1 cut(s)	439
EcoT14I	CCWWGG	2 cut(s)	114, 358
ErhI	CCWWGG	2 cut(s)	114, 358
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FaqI	GGGAC	1 cut(s)	1230
FauNDI	CATATG	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	889
Fnu4HI	GCNGC	3 cut(s)	261, 677, 834
FokI	GGATG	5 cut(s)	132, 404, 416, 1039, 1116
Fsp4HI	GCNGC	3 cut(s)	261, 677, 834
FspBI	CTAG	5 cut(s)	249, 539, 852, 902, 1182
GluI	GCNGC	3 cut(s)	261, 677, 834
HaeIII	GGCC	3 cut(s)	124, 476, 728
HapII	CCGG	3 cut(s)	639, 1248, 1309
HindIII	AAGCTT	2 cut(s)	98, 1018
HinfI	GANTC	7 cut(s)	139, 219, 280, 631, 822, 868, 1185
HpaII	CCGG	3 cut(s)	639, 1248, 1309
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	2 cut(s)	425, 604
Hpy188I	TCNGA	7 cut(s)	312, 821, 894, 1055, 1128, 1146, 1200
Hpy188III	TCNNGA	4 cut(s)	580, 766, 902, 1182
Hpy8I	GTNNAC	2 cut(s)	425, 604
HpyAV	CCTTC	1 cut(s)	1054
HpyCH4III	ACNGT	3 cut(s)	89, 947, 1122
HpyCH4V	TGCA	4 cut(s)	344, 733, 806, 1325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	234, 665, 914
HpyF3I	CTNAG	5 cut(s)	130, 255, 918, 1098, 1164
Ksp22I	TGATCA	1 cut(s)	889
Kzo9I	GATC	2 cut(s)	576, 889
Lsp1109I	GCAGC	2 cut(s)	247, 688
LweI	GCATC	2 cut(s)	1044, 1104
MaeI	CTAG	5 cut(s)	249, 539, 852, 902, 1182
MaeIII	GTNAC	2 cut(s)	277, 1266
MalI	GATC	2 cut(s)	578, 891
MboI	GATC	2 cut(s)	576, 889
MboII	GAAGA	7 cut(s)	88, 166, 450, 523, 726, 950, 967
MflI	RGATCY	1 cut(s)	576
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	3 cut(s)	9, 1272, 1303
MlyI	GAGTC	4 cut(s)	133, 274, 640, 831
MroXI	GAANNNNTTC	2 cut(s)	515, 1211
MseI	TTAA	4 cut(s)	860, 873, 912, 965
MspCI	CTTAAG	1 cut(s)	872
MspI	CCGG	3 cut(s)	639, 1248, 1309
MspR9I	CCNGG	5 cut(s)	108, 503, 639, 1248, 1249
MvaI	CCWGG	2 cut(s)	108, 503
MwoI	GCNNNNNNNGC	3 cut(s)	234, 665, 914
NciI	CCSGG	3 cut(s)	639, 1248, 1249
NcoI	CCATGG	1 cut(s)	114
NdeI	CATATG	1 cut(s)	291
NdeII	GATC	2 cut(s)	576, 889
NheI	GCTAGC	1 cut(s)	248
NlaIV	GGNNCC	2 cut(s)	112, 337
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	277
PdmI	GAANNNNTTC	2 cut(s)	515, 1211
PfeI	GAWTC	3 cut(s)	219, 868, 1185
PflMI	CCANNNNNTGG	1 cut(s)	120
PkrI	GCNGC	3 cut(s)	262, 678, 835
PleI	GAGTC	4 cut(s)	133, 274, 639, 830
PpsI	GAGTC	4 cut(s)	133, 274, 639, 830
PpuMI	RGGWCCY	1 cut(s)	335
Psp5II	RGGWCCY	1 cut(s)	335
Psp6I	CCWGG	2 cut(s)	106, 501
PspGI	CCWGG	2 cut(s)	106, 501
PspN4I	GGNNCC	2 cut(s)	112, 337
PspPI	GGNCC	3 cut(s)	335, 474, 726
PspPPI	RGGWCCY	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	576
RsaI	GTAC	3 cut(s)	27, 273, 878
RsaNI	GTAC	3 cut(s)	26, 272, 877
SaqAI	TTAA	4 cut(s)	860, 873, 912, 965
SatI	GCNGC	3 cut(s)	261, 677, 834
Sau3AI	GATC	2 cut(s)	576, 889
Sau96I	GGNCC	3 cut(s)	335, 474, 726
ScaI	AGTACT	1 cut(s)	878
SchI	GAGTC	4 cut(s)	133, 274, 640, 831
ScrFI	CCNGG	5 cut(s)	108, 503, 639, 1248, 1249
SduI	GDGCHC	1 cut(s)	447
SfaNI	GCATC	2 cut(s)	1044, 1104
SinI	GGWCC	1 cut(s)	335
SmaI	CCCGGG	1 cut(s)	1249
SmlI	CTYRAG	2 cut(s)	872, 1021
SmoI	CTYRAG	2 cut(s)	872, 1021
Sse9I	AATT	3 cut(s)	9, 1272, 1303
SsiI	CCGC	1 cut(s)	834
SspI	AATATT	3 cut(s)	598, 1132, 1151
SspMI	CTAG	5 cut(s)	249, 539, 852, 902, 1182
StyD4I	CCNGG	5 cut(s)	106, 501, 637, 1246, 1247
StyI	CCWWGG	2 cut(s)	114, 358
TaaI	ACNGT	3 cut(s)	89, 947, 1122
TaqI	TCGA	3 cut(s)	441, 1173, 1188
TasI	AATT	3 cut(s)	9, 1272, 1303
TatI	WGTACW	2 cut(s)	271, 876
TauI	GCSGC	1 cut(s)	836
TfiI	GAWTC	3 cut(s)	219, 868, 1185
Tru1I	TTAA	4 cut(s)	860, 873, 912, 965
Tru9I	TTAA	4 cut(s)	860, 873, 912, 965
TscAI	CASTG	3 cut(s)	999, 1068, 1125
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	2 cut(s)	260, 676
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	5 cut(s)	524, 951, 1124, 1204, 1226
TspGWI	ACGGA	2 cut(s)	410, 752
TspMI	CCCGGG	1 cut(s)	1247
TspRI	CASTG	3 cut(s)	999, 1068, 1125
Van91I	CCANNNNNTGG	1 cut(s)	120
Vha464I	CTTAAG	1 cut(s)	872
VpaK11BI	GGWCC	1 cut(s)	335
XagI	CCTNNNNNAGG	1 cut(s)	129
XapI	RAATTY	2 cut(s)	9, 1272
XbaI	TCTAGA	2 cut(s)	901, 1181
XmaI	CCCGGG	1 cut(s)	1247
XmnI	GAANNNNTTC	2 cut(s)	515, 1211
XspI	CTAG	5 cut(s)	249, 539, 852, 902, 1182
ZrmI	AGTACT	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.