Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002224

Physical Location & Seq

Genomic Coordinates Reverse (-)

68721933 .. 68724826

Gene Structure 2894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG482000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAAGAAGAACAAGGGAGGAGAAGAAGAGCTCCATGATCATGGTAATGAAAATAGGGCTCAGCTCCCTCCAGGCTCACTGGGTTGGCCTTATATCGGAGAGACTCTCCAGCTCTATTCTCAGGACCCAAACATTTTCTTCTCTGCCAGACAGAGAAGGTATGGGAAAATTTTCAAGACCCATATACTTGGGAGTCCATGTGTGATGCTGGCCAGCCCGGAGGCTGCAAAGTTTGTGTTGGTCACTCAAGCTCACTTGTTCAGGCCCACCTATCCCAAAAGCAAAGAGGGTCTGATTGGTCCCTCCGCACTATTTTTCCACCAAGGAGATTACCATATCAGACTGAGGAAGCTTGTTCAGGGATCTCTCAACCTTGATGCTATTCGGAATTTGGTGCCCCATATCGATGCCACGGCTGCCTTTATAACCTCGGAGTCATGGGGCACCGGGAAGGTCATTAACACCTTCCATGAGATGCAGAAGTTTTCTTTCGAAGTTGGCACACTAGCAATTTTTGGCCATTTGGAGACCCGCTACAAAGAAGAACTCAAAAAGAACTATATGGTAGTGGAGAAGGGTTACAATTCATTCCCCATAAATATTCCCGGAATACCATATAAAAAGGCTTTACTGGCGAGGGAGAGGCTGAGACATATTTTGGGTGACATTATCCACGAGAGAAAGGAGAAGAGATTACCCGAAAAGGATCTCTTGGGTTGTTTGCTGAGCTCAATAAACGGAGGGGACGTTTTGAGTGATGACCAAATCGCAGACAACATAATAGGTGTGCTCTTTGCTGCTCAAGACACCACAGCCAGTGTCATGACCTGGATTATCAAGTACCTCCACGACGAGCCCAAACTTCTAGAAGCTGTCAAGGCCGAACAAAATGCAATTCGCATATCAAATGAACAAGGCAATCAACCATTGAGTTGGGCACAGACTAAAATCATGCCAATTAGTTATAAGGTGGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010295 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

326

Amino Acids

36.76

Weight (kDa)

8.97

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	23 - 319	6.8e-27	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19270 AT3G19270
fragaria_vesca	FvH4_2g06010 FvH4_2g34420
malus_domestica	MD02G1171600.v1.1 MD05G1081400.v1.1 MD08G1101400.v1.1 MD15G1082600.v1.1 MD15G1283400.v1.1
prunus_persica	Prupe.1G435300_v2.0.a1 Prupe.7G133800_v2.0.a1 Prupe.8G125800_v2.0.a1
pyrus_communis	pycom02g13830 pycom05g07510 pycom08g08190 pycom15g07740
rosa_chinensis	RchiOBHm_Chr2g0105591 RchiOBHm_Chr6g0257401 RchiOBHm_Chr6g0307951
rosa_laevigata	RLG00000010684 RLG00000014690 RLG00000017443
rosa_multiflora	Rmu_sc0000820.1_g000025 Rmu_sc0003252.1_g000022
rosa_roxburghii	Rroxscaffold_2G00138090 Rroxscaffold_7G00160740 Rroxscaffold_7G00208630
rosa_rugosa	Rorug02G0128400 Rorug02G0128500 Rorug05G0573200 Rorug06G0362000
rosa_samantha	Rh2AG180300 Rh2CG184500 Rh2DG186100 Rh6AG090500 Rh6AG471000 Rh6BG482000 Rh6CG078300 Rh6CG487400 Rh6DG074100 Rh6DG473500
rosa_wichuraiana	Rw6G007900 Rw6G041130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	425, 966
AccB1I	GGYRCC	2 cut(s)	394, 443
AciI	CCGC	2 cut(s)	306, 532
AclWI	GGATC	2 cut(s)	370, 714
AcoI	YGGCCR	2 cut(s)	210, 517
AcsI	RAATTY	2 cut(s)	168, 388
AfaI	GTAC	1 cut(s)	842
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	2 cut(s)	70, 827
AluBI	AGCT	7 cut(s)	31, 64, 112, 251, 352, 729, 872
AluI	AGCT	7 cut(s)	31, 64, 112, 251, 352, 729, 872
Alw21I	GWGCWC	3 cut(s)	33, 731, 792
Alw26I	GTCTC	3 cut(s)	95, 521, 643
AlwI	GGATC	2 cut(s)	370, 714
AoxI	GGCC	5 cut(s)	86, 210, 263, 517, 879
ApeKI	GCWGC	3 cut(s)	224, 416, 797
ApoI	RAATTY	2 cut(s)	168, 388
Asp700I	GAANNNNTTC	1 cut(s)	170
AspS9I	GGNCC	3 cut(s)	124, 264, 299
AsuC2I	CCSGG	3 cut(s)	218, 448, 606
AsuHPI	GGTGA	1 cut(s)	674
AsuII	TTCGAA	1 cut(s)	492
AvaII	GGWCC	2 cut(s)	124, 299
BaeGI	GKGCMC	3 cut(s)	399, 446, 940
BalI	TGGCCA	2 cut(s)	212, 519
BanI	GGYRCC	2 cut(s)	394, 443
BanII	GRGCYC	4 cut(s)	33, 61, 731, 858
BauI	CACGAG	1 cut(s)	674
Bbv12I	GWGCWC	3 cut(s)	33, 731, 792
BbvI	GCAGC	3 cut(s)	211, 403, 784
BceAI	ACGGC	1 cut(s)	429
BcgI	CGANNNNNNTGC	2 cut(s)	872, 906
BciT130I	CCWGG	2 cut(s)	72, 829
BclI	TGATCA	1 cut(s)	37
BcnI	CCSGG	3 cut(s)	218, 448, 606
BcoDI	GTCTC	3 cut(s)	95, 521, 643
BfaI	CTAG	2 cut(s)	506, 866
BisI	GCNGC	3 cut(s)	225, 417, 798
BlpI	GCTNAGC	2 cut(s)	60, 725
BlsI	GCNGC	3 cut(s)	226, 418, 799
Bme1390I	CCNGG	5 cut(s)	72, 218, 448, 606, 829
Bme18I	GGWCC	2 cut(s)	124, 299
BmgT120I	GGNCC	3 cut(s)	124, 264, 299
BmiI	GGNNCC	4 cut(s)	126, 301, 396, 445
BmrFI	CCNGG	5 cut(s)	72, 218, 448, 606, 829
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	4 cut(s)	195, 367, 397, 465
BmuI	ACTGGG	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	90, 122
BpmI	CTGGAG	2 cut(s)	54, 92
Bpu1102I	GCTNAGC	2 cut(s)	60, 725
Bpu14I	TTCGAA	1 cut(s)	492
BpuEI	CTTGAG	2 cut(s)	231, 786
BpuMI	CCSGG	3 cut(s)	218, 448, 606
Bsa29I	ATCGAT	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	521
BsaJI	CCNNGG	3 cut(s)	322, 411, 429
BsaXI	ACNNNNNCTCC	4 cut(s)	184, 214, 732, 762
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	3 cut(s)	84, 636, 816
BseBI	CCWGG	2 cut(s)	72, 829
BseCI	ATCGAT	1 cut(s)	405
BseDI	CCNNGG	3 cut(s)	322, 411, 429
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	5 cut(s)	74, 134, 335, 638, 716
BseNI	ACTGG	3 cut(s)	84, 636, 816
BseRI	GAGGAG	1 cut(s)	33
BseSI	GKGCMC	3 cut(s)	399, 446, 940
BseXI	GCAGC	3 cut(s)	211, 403, 784
BshFI	GGCC	5 cut(s)	88, 212, 265, 519, 881
BshNI	GGYRCC	2 cut(s)	394, 443
BshVI	ATCGAT	1 cut(s)	405
BsiHKAI	GWGCWC	3 cut(s)	33, 731, 792
BsiSI	CCGG	3 cut(s)	218, 447, 606
BslFI	GGGAC	2 cut(s)	285, 758
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	3 cut(s)	95, 521, 643
BsmFI	GGGAC	2 cut(s)	285, 758
BsnI	GGCC	5 cut(s)	88, 212, 265, 519, 881
Bso31I	GGTCTC	1 cut(s)	521
Bsp119I	TTCGAA	1 cut(s)	492
Bsp1286I	GDGCHC	8 cut(s)	33, 61, 399, 446, 731, 792, 858, 940
Bsp143I	GATC	3 cut(s)	37, 362, 706
Bsp1720I	GCTNAGC	2 cut(s)	60, 725
BspACI	CCGC	2 cut(s)	306, 532
BspANI	GGCC	5 cut(s)	88, 212, 265, 519, 881
BspCNI	CTCAG	5 cut(s)	73, 133, 336, 639, 717
BspDI	ATCGAT	1 cut(s)	405
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	4 cut(s)	126, 301, 396, 445
BspPI	GGATC	2 cut(s)	370, 714
BspQI	GCTCTTC	1 cut(s)	21
BspT104I	TTCGAA	1 cut(s)	492
BspT107I	GGYRCC	2 cut(s)	394, 443
BspTNI	GGTCTC	1 cut(s)	521
BsrI	ACTGG	3 cut(s)	84, 636, 816
BssECI	CCNNGG	3 cut(s)	322, 411, 429
BssMI	GATC	3 cut(s)	37, 362, 706
BssSI	CACGAG	1 cut(s)	674
BssT1I	CCWWGG	1 cut(s)	322
Bst2BI	CACGAG	1 cut(s)	674
Bst2UI	CCWGG	2 cut(s)	72, 829
Bst6I	CTCTTC	2 cut(s)	21, 683
BstBI	TTCGAA	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	210, 214
BstDEI	CTNAG	5 cut(s)	60, 120, 344, 647, 725
BstDSI	CCRYGG	1 cut(s)	411
BstKTI	GATC	3 cut(s)	40, 365, 709
BstMAI	GTCTC	3 cut(s)	95, 521, 643
BstMBI	GATC	3 cut(s)	37, 362, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	416, 632, 878
BstNI	CCWGG	2 cut(s)	72, 829
BstSCI	CCNGG	5 cut(s)	70, 216, 446, 604, 827
BstSLI	GKGCMC	3 cut(s)	399, 446, 940
BstV1I	GCAGC	3 cut(s)	211, 403, 784
BstX2I	RGATCY	2 cut(s)	362, 706
BstXI	CCANNNNNNTGG	3 cut(s)	41, 188, 933
BstYI	RGATCY	2 cut(s)	362, 706
Bsu15I	ATCGAT	1 cut(s)	405
BsuRI	GGCC	5 cut(s)	88, 212, 265, 519, 881
BsuTUI	ATCGAT	1 cut(s)	405
BtgI	CCRYGG	1 cut(s)	411
BtsIMutI	CAGTG	2 cut(s)	77, 823
Cac8I	GCNNGC	2 cut(s)	210, 214
CciI	TCATGA	1 cut(s)	822
Cfr13I	GGNCC	3 cut(s)	124, 264, 299
ClaI	ATCGAT	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	841
CviAII	CATG	7 cut(s)	35, 41, 198, 438, 470, 823, 952
CviQI	GTAC	1 cut(s)	841
DdeI	CTNAG	5 cut(s)	60, 120, 344, 647, 725
DpnI	GATC	3 cut(s)	39, 364, 708
DpnII	GATC	3 cut(s)	37, 362, 706
EaeI	YGGCCR	2 cut(s)	210, 517
Eam1104I	CTCTTC	2 cut(s)	21, 683
EarI	CTCTTC	2 cut(s)	21, 683
Ecl136II	GAGCTC	2 cut(s)	31, 729
Eco130I	CCWWGG	1 cut(s)	322
Eco24I	GRGCYC	4 cut(s)	33, 61, 731, 858
Eco31I	GGTCTC	1 cut(s)	521
Eco47I	GGWCC	2 cut(s)	124, 299
Eco53kI	GAGCTC	2 cut(s)	31, 729
EcoICRI	GAGCTC	2 cut(s)	31, 729
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	70, 827
EcoT14I	CCWWGG	1 cut(s)	322
EcoT38I	GRGCYC	4 cut(s)	33, 61, 731, 858
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	7 cut(s)	38, 44, 201, 441, 473, 826, 955
FalI	AAGNNNNNCTT	2 cut(s)	695, 727
FaqI	GGGAC	2 cut(s)	285, 758
FatI	CATG	7 cut(s)	34, 40, 197, 437, 469, 822, 951
FauI	CCCGC	1 cut(s)	539
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	3 cut(s)	225, 417, 798
FriOI	GRGCYC	4 cut(s)	33, 61, 731, 858
Fsp4HI	GCNGC	3 cut(s)	225, 417, 798
FspBI	CTAG	2 cut(s)	506, 866
GluI	GCNGC	3 cut(s)	225, 417, 798
GsuI	CTGGAG	2 cut(s)	54, 92
HaeIII	GGCC	5 cut(s)	88, 212, 265, 519, 881
HapII	CCGG	3 cut(s)	218, 447, 606
Hin1II	CATG	7 cut(s)	38, 44, 201, 441, 473, 826, 955
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	3 cut(s)	103, 193, 434
HpaII	CCGG	3 cut(s)	218, 447, 606
HphI	GGTGA	1 cut(s)	674
Hpy188I	TCNGA	5 cut(s)	98, 294, 341, 387, 433
Hpy188III	TCNNGA	5 cut(s)	122, 175, 803, 823, 866
Hpy99I	CGWCG	1 cut(s)	854
HpyAV	CCTTC	4 cut(s)	150, 445, 475, 568
HpyCH4IV	ACGT	1 cut(s)	747
HpyCH4V	TGCA	3 cut(s)	227, 478, 893
HpyF10VI	GCNNNNNNNGC	3 cut(s)	416, 632, 878
HpyF3I	CTNAG	5 cut(s)	60, 120, 344, 647, 725
HpySE526I	ACGT	1 cut(s)	747
Hsp92II	CATG	7 cut(s)	38, 44, 201, 441, 473, 826, 955
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	37, 362, 706
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	2 cut(s)	36, 69
Lsp1109I	GCAGC	3 cut(s)	211, 403, 784
LweI	GCATC	4 cut(s)	195, 367, 397, 465
MaeI	CTAG	2 cut(s)	506, 866
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	3 cut(s)	241, 578, 662
MalI	GATC	3 cut(s)	39, 364, 708
MboI	GATC	3 cut(s)	37, 362, 706
MboII	GAAGA	7 cut(s)	16, 19, 35, 38, 130, 554, 700
MflI	RGATCY	2 cut(s)	362, 706
MhlI	GDGCHC	8 cut(s)	33, 61, 399, 446, 731, 792, 858, 940
MlsI	TGGCCA	2 cut(s)	212, 519
MluCI	AATT	7 cut(s)	168, 388, 510, 583, 894, 957, 976
MluNI	TGGCCA	2 cut(s)	212, 519
MlyI	GAGTC	3 cut(s)	97, 202, 443
Mox20I	TGGCCA	2 cut(s)	212, 519
MroXI	GAANNNNTTC	1 cut(s)	170
MscI	TGGCCA	2 cut(s)	212, 519
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	3 cut(s)	39, 45, 405
Msp20I	TGGCCA	2 cut(s)	212, 519
MspI	CCGG	3 cut(s)	218, 447, 606
MspR9I	CCNGG	5 cut(s)	72, 218, 448, 606, 829
MvaI	CCWGG	2 cut(s)	72, 829
MwoI	GCNNNNNNNGC	3 cut(s)	416, 632, 878
NciI	CCSGG	3 cut(s)	218, 448, 606
NdeII	GATC	3 cut(s)	37, 362, 706
NlaIII	CATG	7 cut(s)	38, 44, 201, 441, 473, 826, 955
NlaIV	GGNNCC	4 cut(s)	126, 301, 396, 445
NmuCI	GTSAC	2 cut(s)	241, 662
NspV	TTCGAA	1 cut(s)	492
PagI	TCATGA	1 cut(s)	822
PciSI	GCTCTTC	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	744
PdmI	GAANNNNTTC	1 cut(s)	170
PfoI	TCCNGGA	1 cut(s)	604
PkrI	GCNGC	3 cut(s)	226, 418, 799
PleI	GAGTC	3 cut(s)	97, 201, 442
PpsI	GAGTC	3 cut(s)	97, 201, 442
PpuMI	RGGWCCY	1 cut(s)	124
PsiI	TTATAA	2 cut(s)	425, 966
Psp124BI	GAGCTC	2 cut(s)	33, 731
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	70, 827
PspGI	CCWGG	2 cut(s)	70, 827
PspN4I	GGNNCC	4 cut(s)	126, 301, 396, 445
PspPI	GGNCC	3 cut(s)	124, 264, 299
PspPPI	RGGWCCY	1 cut(s)	124
PsuI	RGATCY	2 cut(s)	362, 706
RsaI	GTAC	1 cut(s)	842
RsaNI	GTAC	1 cut(s)	841
RseI	CAYNNNNRTG	3 cut(s)	39, 45, 405
SacI	GAGCTC	2 cut(s)	33, 731
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	3 cut(s)	225, 417, 798
Sau3AI	GATC	3 cut(s)	37, 362, 706
Sau96I	GGNCC	3 cut(s)	124, 264, 299
SchI	GAGTC	3 cut(s)	97, 202, 443
ScrFI	CCNGG	5 cut(s)	72, 218, 448, 606, 829
SduI	GDGCHC	8 cut(s)	33, 61, 399, 446, 731, 792, 858, 940
SfaNI	GCATC	4 cut(s)	195, 367, 397, 465
SfuI	TTCGAA	1 cut(s)	492
SinI	GGWCC	2 cut(s)	124, 299
SmiMI	CAYNNNNRTG	3 cut(s)	39, 45, 405
SmlI	CTYRAG	2 cut(s)	246, 801
SmoI	CTYRAG	2 cut(s)	246, 801
Sse9I	AATT	7 cut(s)	168, 388, 510, 583, 894, 957, 976
SsiI	CCGC	2 cut(s)	306, 532
SspI	AATATT	1 cut(s)	601
SspMI	CTAG	2 cut(s)	506, 866
SstI	GAGCTC	2 cut(s)	33, 731
StyD4I	CCNGG	5 cut(s)	70, 216, 446, 604, 827
StyI	CCWWGG	1 cut(s)	322
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	2 cut(s)	405, 492
TasI	AATT	7 cut(s)	168, 388, 510, 583, 894, 957, 976
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	2 cut(s)	84, 823
TseFI	GTSAC	2 cut(s)	241, 662
TseI	GCWGC	3 cut(s)	224, 416, 797
Tsp45I	GTSAC	2 cut(s)	241, 662
TspDTI	ATGAA	4 cut(s)	17, 63, 576, 924
TspGWI	ACGGA	1 cut(s)	753
TspRI	CASTG	2 cut(s)	84, 823
VpaK11BI	GGWCC	2 cut(s)	124, 299
XapI	RAATTY	2 cut(s)	168, 388
XbaI	TCTAGA	1 cut(s)	865
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	2 cut(s)	506, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.