Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002224

Physical Location & Seq

Genomic Coordinates Forward (+)

13427355 .. 13431356

Gene Structure 4002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG090500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGCCTTGCATAGGAGAGACTCTACAAATGTACTCTATGGATCCAAACAAATTCTTTGCCACAAAGCAGAAAAGGTTTCTAATCAATTAGCAACCTCTGAATCCAAAATTCATGTTTCTATCGCATATTGCATGGATTTGATCCAACTTGTTCTGGTTTACTTGTTCATCAGGTATGGAGAGATATTCAAAACCCACATACTTGGCTGTCCTTGTGTCATGCTGGCAAGCCCTGAGGCCACAAAGTTTGTGTTGGTGACTCATGCTCACCTCTTCAAGCCCACATACCCGAAAAGCAAGGAGAAGCTGATTGGCCCTTCTGCTTTGTTCTTTCACCAGGGAGATTACCACAGCAGCCTTAAGAAACTCATTCAGAGCTCTCTGTCTCCGAACCCCAATACTATGCAGAAACTGGTTCCTGACATTGAAGCCTTAGCCATTTCTGCCTTGGAATCATGGGCTGCAGCCGGAACTGTCATCAACACCTATCATGAAATGAAGAAGTTCGTGTTTGATGTCGGTTTTCTTGCCATTTTTGGCCGGCTGGATGATAGTTATAGAGAGAAGCTCAAGGAGAGCTACCACATCGTAGACGCGGGTTACAATTCGTTTCCAACAAATATACCAGGCACTGCATATCAGAAAGCTCTCTTAGCGAGGAAAAGGCTTAGTCAGATTCTGAGGCAGATAATTTGTGAGAGGAAGGAAAAGAAAATACTGCAGAAAGATCTCTTGGGTGATCTGCTGAATTTTCAAAATGAAAAGGGGCAAAACTTAACTGAGGATCAAATTTCCGATAACATCATTGGAGTACTGTTTGCTGCCCAAGACACTACAGCCAGTGTTTTAACATGGATTCTCAAGTACCTCCATGACAACCAAAACATTCTTGAAGCTGTGAAGGCCGAGCAGAAGGCAATATATGATGCAAATGATGGGTATAAGAGGCCATTGACTTGGGCACAAATCAGAAATATGCCACTTACACATAGAGTTATATTAGAGAGCTTGAGGATGGCAAGTATTATTTCTTTTGCATTTAGGGAAGCTGTGGTTGATGTAGAATACAAAGGATATCTCATACCAAAGGGTTGGAAGGTGATGCCGTTGTTTAGGAACATACATCACAATCCTGAATTATTCTCTGGTCCTCAAAATTTTGATCCATCTAGGTTTGAGGTTGCTCCAAAGGCTTATACTTTCATACCATTTGGGAAAGGAGTACATGCTTGTCCTGGAAATGAGCTAGCCAAACTGGAGATGCTCATTTTGATCCATCATCTTCTGACTAATTTCAGGTGTGAAGTAGTGGGATCACAAAAAGGGATTCAGTATGGCCCATTTCCAGTTCCTCAGCATGGACTACCAGCCAGATTTGTGAAAGAACAAGTTAATCCCAAACAAGATTTCTGGACCACTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010295 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

474

Amino Acids

53.8

Weight (kDa)

9.1

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	47 - 437	1.6e-68	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19270 AT3G19270
fragaria_vesca	FvH4_2g06010 FvH4_2g34420
malus_domestica	MD02G1171600.v1.1 MD05G1081400.v1.1 MD08G1101400.v1.1 MD15G1082600.v1.1 MD15G1283400.v1.1
prunus_persica	Prupe.1G435300_v2.0.a1 Prupe.7G133800_v2.0.a1 Prupe.8G125800_v2.0.a1
pyrus_communis	pycom02g13830 pycom05g07510 pycom08g08190 pycom15g07740
rosa_chinensis	RchiOBHm_Chr2g0105591 RchiOBHm_Chr6g0257401 RchiOBHm_Chr6g0307951
rosa_laevigata	RLG00000010684 RLG00000014690 RLG00000017443
rosa_multiflora	Rmu_sc0000820.1_g000025 Rmu_sc0003252.1_g000022
rosa_roxburghii	Rroxscaffold_2G00138090 Rroxscaffold_7G00160740 Rroxscaffold_7G00208630
rosa_rugosa	Rorug02G0128400 Rorug02G0128500 Rorug05G0573200 Rorug06G0362000
rosa_samantha	Rh2AG180300 Rh2CG184500 Rh2DG186100 Rh6AG090500 Rh6AG471000 Rh6BG482000 Rh6CG078300 Rh6CG487400 Rh6DG074100 Rh6DG473500
rosa_wichuraiana	Rw6G007900 Rw6G041130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	591
AccII	CGCG	1 cut(s)	596
AciI	CCGC	1 cut(s)	596
AclWI	GGATC	7 cut(s)	36, 49, 136, 792, 1157, 1267, 1321
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	5 cut(s)	51, 108, 748, 789, 1156
AfaI	GTAC	4 cut(s)	33, 813, 866, 1224
AfiI	CCNNNNNNNGG	2 cut(s)	12, 1358
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	5 cut(s)	190, 277, 428, 755, 893
AhlI	ACTAGT	1 cut(s)	1418
AjnI	CCWGG	3 cut(s)	336, 625, 1234
AjuI	GAANNNNNNNTTGG	4 cut(s)	716, 748, 1391, 1423
AluBI	AGCT	9 cut(s)	307, 378, 568, 579, 647, 896, 1008, 1049, 1246
AluI	AGCT	9 cut(s)	307, 378, 568, 579, 647, 896, 1008, 1049, 1246
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	2 cut(s)	12, 390
AlwI	GGATC	7 cut(s)	36, 49, 136, 792, 1157, 1267, 1321
AlwNI	CAGNNNCTG	3 cut(s)	412, 632, 679
AoxI	GGCC	7 cut(s)	3, 237, 313, 538, 903, 947, 1336
ApeKI	GCWGC	4 cut(s)	354, 461, 464, 821
ApoI	RAATTY	5 cut(s)	51, 108, 748, 789, 1156
Asp700I	GAANNNNTTC	1 cut(s)	503
AspS9I	GGNCC	4 cut(s)	314, 1148, 1337, 1413
AsuHPI	GGTGA	5 cut(s)	260, 268, 326, 749, 1111
AsuNHI	GCTAGC	1 cut(s)	1246
AvaII	GGWCC	2 cut(s)	1148, 1413
AxyI	CCTNAGG	1 cut(s)	234
BaeGI	GKGCMC	1 cut(s)	964
BamHI	GGATCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	380
BbvCI	CCTCAGC	1 cut(s)	1353
BbvI	GCAGC	4 cut(s)	366, 448, 476, 808
BccI	CCATC	4 cut(s)	929, 1009, 1174, 1284
BceAI	ACGGC	1 cut(s)	1090
BciT130I	CCWGG	3 cut(s)	338, 627, 1236
BcoDI	GTCTC	2 cut(s)	12, 390
BcuI	ACTAGT	1 cut(s)	1418
BfaI	CTAG	3 cut(s)	1170, 1247, 1419
BfmI	CTRYAG	3 cut(s)	462, 719, 834
BfrI	CTTAAG	1 cut(s)	359
BglII	AGATCT	1 cut(s)	727
BisI	GCNGC	4 cut(s)	355, 462, 465, 822
BlsI	GCNGC	4 cut(s)	356, 463, 466, 823
BmcAI	AGTACT	1 cut(s)	813
Bme1390I	CCNGG	3 cut(s)	338, 627, 1236
Bme18I	GGWCC	2 cut(s)	1148, 1413
BmgT120I	GGNCC	4 cut(s)	314, 1148, 1337, 1413
BmiI	GGNNCC	2 cut(s)	43, 417
BmrFI	CCNGG	3 cut(s)	338, 627, 1236
BmsI	GCATC	3 cut(s)	916, 1092, 1251
BmtI	GCTAGC	1 cut(s)	1250
BplI	GAGNNNNNCTC	2 cut(s)	552, 584
BpmI	CTGGAG	1 cut(s)	1277
Bpu10I	CCTNAGC	2 cut(s)	433, 1353
BpuEI	CTTGAG	3 cut(s)	554, 845, 1030
BsaJI	CCNNGG	2 cut(s)	337, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 1358
Bse118I	RCCGGY	1 cut(s)	540
Bse1I	ACTGG	4 cut(s)	417, 840, 1260, 1346
Bse21I	CCTNAGG	1 cut(s)	234
BseBI	CCWGG	3 cut(s)	338, 627, 1236
BseDI	CCNNGG	2 cut(s)	337, 447
BseGI	GGATG	2 cut(s)	553, 1020
BseLI	CCNNNNNNNGG	2 cut(s)	12, 1358
BseMII	CTCAG	4 cut(s)	225, 671, 771, 1367
BseNI	ACTGG	4 cut(s)	417, 840, 1260, 1346
BseSI	GKGCMC	1 cut(s)	964
BseXI	GCAGC	4 cut(s)	366, 448, 476, 808
Bsh1236I	CGCG	1 cut(s)	596
BshFI	GGCC	7 cut(s)	5, 239, 315, 540, 905, 949, 1338
BsiHKAI	GWGCWC	1 cut(s)	380
BsiSI	CCGG	2 cut(s)	468, 541
BslI	CCNNNNNNNGG	2 cut(s)	12, 1358
BsmAI	GTCTC	2 cut(s)	12, 390
BsnI	GGCC	7 cut(s)	5, 239, 315, 540, 905, 949, 1338
Bsp1286I	GDGCHC	2 cut(s)	380, 964
Bsp143I	GATC	8 cut(s)	41, 141, 727, 739, 784, 1162, 1272, 1313
BspACI	CCGC	1 cut(s)	596
BspANI	GGCC	7 cut(s)	5, 239, 315, 540, 905, 949, 1338
BspCNI	CTCAG	4 cut(s)	226, 672, 772, 1366
BspFNI	CGCG	1 cut(s)	596
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	2 cut(s)	43, 417
BspMAI	CTGCAG	2 cut(s)	466, 723
BspOI	GCTAGC	1 cut(s)	1250
BspPI	GGATC	7 cut(s)	36, 49, 136, 792, 1157, 1267, 1321
BspTI	CTTAAG	1 cut(s)	359
BsrFI	RCCGGY	1 cut(s)	540
BsrI	ACTGG	4 cut(s)	417, 840, 1260, 1346
BssAI	RCCGGY	1 cut(s)	540
BssECI	CCNNGG	2 cut(s)	337, 447
BssMI	GATC	8 cut(s)	41, 141, 727, 739, 784, 1162, 1272, 1313
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	3 cut(s)	338, 627, 1236
Bst4CI	ACNGT	2 cut(s)	475, 816
Bst6I	CTCTTC	1 cut(s)	278
BstAFI	CTTAAG	1 cut(s)	359
BstC8I	GCNNGC	4 cut(s)	225, 229, 542, 1248
BstDEI	CTNAG	7 cut(s)	234, 433, 652, 668, 680, 780, 1353
BstENI	CCTNNNNNAGG	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	553, 1020
BstFNI	CGCG	1 cut(s)	596
BstKTI	GATC	8 cut(s)	44, 144, 730, 742, 787, 1165, 1275, 1316
BstMAI	GTCTC	2 cut(s)	12, 390
BstMBI	GATC	8 cut(s)	41, 141, 727, 739, 784, 1162, 1272, 1313
BstMWI	GCNNNNNNNGC	4 cut(s)	443, 653, 902, 1190
BstNI	CCWGG	3 cut(s)	338, 627, 1236
BstNSI	RCATGY	1 cut(s)	1229
BstSCI	CCNGG	3 cut(s)	336, 625, 1234
BstSFI	CTRYAG	3 cut(s)	462, 719, 834
BstSLI	GKGCMC	1 cut(s)	964
BstUI	CGCG	1 cut(s)	596
BstV1I	GCAGC	4 cut(s)	366, 448, 476, 808
BstX2I	RGATCY	2 cut(s)	41, 727
BstXI	CCANNNNNNTGG	3 cut(s)	203, 957, 1092
BstYI	RGATCY	2 cut(s)	41, 727
Bsu36I	CCTNAGG	1 cut(s)	234
BsuRI	GGCC	7 cut(s)	5, 239, 315, 540, 905, 949, 1338
BtsCI	GGATG	2 cut(s)	553, 1020
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	2 cut(s)	630, 847
Cac8I	GCNNGC	4 cut(s)	225, 229, 542, 1248
CaiI	CAGNNNCTG	3 cut(s)	412, 632, 679
CciI	TCATGA	1 cut(s)	490
Cfr10I	RCCGGY	1 cut(s)	540
Cfr13I	GGNCC	4 cut(s)	314, 1148, 1337, 1413
CseI	GACGC	1 cut(s)	602
Csp6I	GTAC	4 cut(s)	32, 812, 865, 1223
CspCI	CAANNNNNGTGG	2 cut(s)	229, 264
CviQI	GTAC	4 cut(s)	32, 812, 865, 1223
DdeI	CTNAG	7 cut(s)	234, 433, 652, 668, 680, 780, 1353
DpnI	GATC	8 cut(s)	43, 143, 729, 741, 786, 1164, 1274, 1315
DpnII	GATC	8 cut(s)	41, 141, 727, 739, 784, 1162, 1272, 1313
EaeI	YGGCCR	1 cut(s)	538
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Ecl136II	GAGCTC	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	380
Eco32I	GATATC	1 cut(s)	1076
Eco47I	GGWCC	2 cut(s)	1148, 1413
Eco53kI	GAGCTC	1 cut(s)	378
Eco81I	CCTNAGG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	378
EcoNI	CCTNNNNNAGG	1 cut(s)	10
EcoRII	CCWGG	3 cut(s)	336, 625, 1234
EcoRV	GATATC	1 cut(s)	1076
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	447
FauI	CCCGC	1 cut(s)	589
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	4 cut(s)	355, 462, 465, 822
FokI	GGATG	2 cut(s)	560, 1027
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	4 cut(s)	355, 462, 465, 822
FspBI	CTAG	3 cut(s)	1170, 1247, 1419
GluI	GCNGC	4 cut(s)	355, 462, 465, 822
GsuI	CTGGAG	1 cut(s)	1277
HaeIII	GGCC	7 cut(s)	5, 239, 315, 540, 905, 949, 1338
HapII	CCGG	2 cut(s)	468, 541
HgaI	GACGC	1 cut(s)	602
HinfI	GANTC	7 cut(s)	20, 101, 259, 452, 676, 856, 1327
HpaII	CCGG	2 cut(s)	468, 541
HphI	GGTGA	5 cut(s)	260, 268, 326, 749, 1111
Hpy166II	GTNNAC	2 cut(s)	160, 592
Hpy188I	TCNGA	9 cut(s)	100, 375, 390, 642, 675, 681, 796, 971, 1287
Hpy188III	TCNNGA	5 cut(s)	419, 491, 890, 1133, 1411
Hpy8I	GTNNAC	2 cut(s)	160, 592
HpyAV	CCTTC	5 cut(s)	327, 697, 895, 907, 1090
HpyCH4III	ACNGT	2 cut(s)	475, 816
HpyCH4V	TGCA	8 cut(s)	10, 132, 406, 464, 635, 721, 929, 1037
HpyF10VI	GCNNNNNNNGC	4 cut(s)	443, 653, 902, 1190
HpyF3I	CTNAG	7 cut(s)	234, 433, 652, 668, 680, 780, 1353
KroI	GCCGGC	1 cut(s)	540
KroNI	GCCGGC	1 cut(s)	542
Kzo9I	GATC	8 cut(s)	41, 141, 727, 739, 784, 1162, 1272, 1313
LmnI	GCTCC	1 cut(s)	1189
Lsp1109I	GCAGC	4 cut(s)	366, 448, 476, 808
LweI	GCATC	3 cut(s)	916, 1092, 1251
MaeI	CTAG	3 cut(s)	1170, 1247, 1419
MaeIII	GTNAC	2 cut(s)	256, 599
MalI	GATC	8 cut(s)	43, 143, 729, 741, 786, 1164, 1274, 1315
MboI	GATC	8 cut(s)	41, 141, 727, 739, 784, 1162, 1272, 1313
MboII	GAAGA	3 cut(s)	265, 511, 1274
MflI	RGATCY	2 cut(s)	41, 727
MhlI	GDGCHC	2 cut(s)	380, 964
MlyI	GAGTC	2 cut(s)	14, 253
MmeI	TCCRAC	3 cut(s)	169, 638, 1073
MroNI	GCCGGC	1 cut(s)	540
MroXI	GAANNNNTTC	1 cut(s)	503
MseI	TTAA	5 cut(s)	360, 776, 848, 1392, 1423
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	2 cut(s)	468, 541
MspR9I	CCNGG	3 cut(s)	338, 627, 1236
MvaI	CCWGG	3 cut(s)	338, 627, 1236
MvnI	CGCG	1 cut(s)	596
MwoI	GCNNNNNNNGC	4 cut(s)	443, 653, 902, 1190
NaeI	GCCGGC	1 cut(s)	542
NdeII	GATC	8 cut(s)	41, 141, 727, 739, 784, 1162, 1272, 1313
NgoMIV	GCCGGC	1 cut(s)	540
NheI	GCTAGC	1 cut(s)	1246
NlaIV	GGNNCC	2 cut(s)	43, 417
NmeAIII	GCCGAG	1 cut(s)	931
NmuCI	GTSAC	1 cut(s)	256
NspI	RCATGY	1 cut(s)	1229
PagI	TCATGA	1 cut(s)	490
PdiI	GCCGGC	1 cut(s)	542
PdmI	GAANNNNTTC	1 cut(s)	503
PfeI	GAWTC	5 cut(s)	101, 452, 676, 856, 1327
PfoI	TCCNGGA	1 cut(s)	1234
PkrI	GCNGC	4 cut(s)	356, 463, 466, 823
PleI	GAGTC	2 cut(s)	14, 253
PpsI	GAGTC	2 cut(s)	14, 253
Psp124BI	GAGCTC	1 cut(s)	380
Psp6I	CCWGG	3 cut(s)	336, 625, 1234
PspGI	CCWGG	3 cut(s)	336, 625, 1234
PspN4I	GGNNCC	2 cut(s)	43, 417
PspPI	GGNCC	4 cut(s)	314, 1148, 1337, 1413
PstI	CTGCAG	2 cut(s)	466, 723
PstNI	CAGNNNCTG	3 cut(s)	412, 632, 679
PsuI	RGATCY	2 cut(s)	41, 727
RsaI	GTAC	4 cut(s)	33, 813, 866, 1224
RsaNI	GTAC	4 cut(s)	32, 812, 865, 1223
SacI	GAGCTC	1 cut(s)	380
SaqAI	TTAA	5 cut(s)	360, 776, 848, 1392, 1423
SatI	GCNGC	4 cut(s)	355, 462, 465, 822
Sau3AI	GATC	8 cut(s)	41, 141, 727, 739, 784, 1162, 1272, 1313
Sau96I	GGNCC	4 cut(s)	314, 1148, 1337, 1413
ScaI	AGTACT	1 cut(s)	813
SchI	GAGTC	2 cut(s)	14, 253
ScrFI	CCNGG	3 cut(s)	338, 627, 1236
SduI	GDGCHC	2 cut(s)	380, 964
SfaNI	GCATC	3 cut(s)	916, 1092, 1251
SfcI	CTRYAG	3 cut(s)	462, 719, 834
SinI	GGWCC	2 cut(s)	1148, 1413
SmlI	CTYRAG	4 cut(s)	359, 569, 860, 1009
SmoI	CTYRAG	4 cut(s)	359, 569, 860, 1009
SpeI	ACTAGT	1 cut(s)	1418
SsiI	CCGC	1 cut(s)	596
SspMI	CTAG	3 cut(s)	1170, 1247, 1419
SstI	GAGCTC	1 cut(s)	380
StyD4I	CCNGG	3 cut(s)	336, 625, 1234
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	2 cut(s)	475, 816
TatI	WGTACW	3 cut(s)	31, 811, 1222
TfiI	GAWTC	5 cut(s)	101, 452, 676, 856, 1327
Tru1I	TTAA	5 cut(s)	360, 776, 848, 1392, 1423
Tru9I	TTAA	5 cut(s)	360, 776, 848, 1392, 1423
TscAI	CASTG	2 cut(s)	637, 847
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	4 cut(s)	354, 461, 464, 821
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	6 cut(s)	101, 157, 507, 512, 774, 1192
TspRI	CASTG	2 cut(s)	637, 847
Vha464I	CTTAAG	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	1148, 1413
XagI	CCTNNNNNAGG	1 cut(s)	10
XapI	RAATTY	5 cut(s)	51, 108, 748, 789, 1156
XceI	RCATGY	1 cut(s)	1229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XmiI	GTMKAC	1 cut(s)	591
XmnI	GAANNNNTTC	1 cut(s)	503
XspI	CTAG	3 cut(s)	1170, 1247, 1419
ZrmI	AGTACT	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.