Rroxscaffold_2G00138090

Cytochrome P450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
76144880 .. 76148155
3276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00138090.1

Sequence Viewer

Length: 1434 bp
ATGAATACTGTTCTTTTATACTGTTTTGTATTTGCTCTACTCTCTTTCATATTACTTGGAAAACAAACGAGAAACAAACCCCGAGCAAAGCTTCCTCCAGGTTCAATGGGATGGCCATATCTTGGAGAAACCCTGCAACTCTACTCTCAAAATCCAAATGTCTTCTTTGGCACTAGGCAGCAAAGGTATGGAGAAATTTTCAAGACCCATATTCTTGGGAGCCCTGGTGTGATGCTGTGTAGCCCAGAGGCTATCCGGTTTGTGTTGGTGACTCAGGCACATTTGTTTAAGCCAACATACCCTAAAAGTAAGGAAAAATTGATTGGCCCCTCGGCACTTTTCTTCCACCAAGATGACTACCATACTCAAATGAGAAGATTAGTCCAAGAATCACTGTCCTTGGATGCTATCAAGAACTTAGTCCCGGATATTGAAGCCATTGCCATTTCTACCTTGGACTCGTGGTCTGGTGGGCAAATTGTCAACACCTTTTATGAATTGAAGAAGTTCACTTTTGATGTTGCTGCCTTGTTTATCTTCGGTCGCTTGAACACTCACTACAAAGAACAGCTAAAGAAAAACTACTTCACTGTAGACAAAGGTTACAATTGTTTCCCTATAAACCTACCAGGCTCTTCATACAATAAGTCGGTCTTGGCAAGGAGAAGGCTAAGCTTAATTCTCGGTGAGATAATAAAGGAGAGAAAGGAAAATAAATTGGTCGAGAAAGATCTATTGGGAAGCTTATTGAAGTTCAAGGATGAACAGGGTCAAACCTTAACACACAACCAGATCCTTGATAACATTATTGGGGTATTGTTTGCTGCTCAGGACACCACAGCTACTCTCCTGACTTGGATTCTCAAATACATGCACGATTACTCTGAACTTCTAGAAGCTATTCAGGTAGAACATAAGGCAATTTTTGCAGCAAATGAGGGTGGAAACCAGTCGCTCAGTTGGGCTCAAACTAGAAATATGCCCCTTACCAGTAGGGCTATAAAGGAGAGTTTGAGGATGGCAAGCATAATTTCTTTCACCTTCAGAGAAGCCGTTGAAGACGTTGAATATAAAGGATACTTGATCCGAAAGGGATGGAAGGTACTGCCTTTGTTCCGGAACATTCATCACAATCCTGATTTTTTCAATGAACCCCATAATTTCAATCCATCAAGATTTGAGCTTGGAATAAGACCCAATACGTTCGTGCCATTTGGCAATGGAGTTCATACTTGTCCTGGAAATGAAGTTGCCAAGACTGAGATACTTATTTTCATCTACCACCTCGTTAACAAGTTCAGGTGGGAAGCAGCGGCGTCCGATGGTGGGATTCAATATGACCCATTTCCAGTACCTCAGCAAGGACTTCCGGCCAAATTTTGGAAAGAGTACTCCGGCAGCCAAGGAGCGCTGTATGATAAAAGAGCAAACTAG

Protein Analysis

477

Amino Acids

54.52

Weight (kDa)

9.22

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 32 - 438 1.7e-67 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 122, 1380
AccI GTMKAC 1 cut(s) 594
AccIII TCCGGA 1 cut(s) 1116
AciI CCGC 1 cut(s) 1313
AclWI GGATC 2 cut(s) 787, 1078
AcoI YGGCCR 2 cut(s) 113, 1371
AcsI RAATTY 2 cut(s) 195, 1376
AcuI CTGAAG 1 cut(s) 1027
AcyI GRCGYC 1 cut(s) 1316
AfaI GTAC 3 cut(s) 1104, 1353, 1391
AfeI AGCGCT 1 cut(s) 1410
AfiI CCNNNNNNNGG 4 cut(s) 122, 1326, 1361, 1380
AhdI GACNNNNNGTC 1 cut(s) 463
AjnI CCWGG 4 cut(s) 97, 223, 628, 1237
AjuI GAANNNNNNNTTGG 4 cut(s) 306, 338, 719, 751
AluBI AGCT 7 cut(s) 91, 571, 675, 744, 842, 899, 1183
AluI AGCT 7 cut(s) 91, 571, 675, 744, 842, 899, 1183
AlwI GGATC 2 cut(s) 787, 1078
Ama87I CYCGRG 1 cut(s) 81
Aor13HI TCCGGA 1 cut(s) 1116
Aor51HI AGCGCT 1 cut(s) 1410
AoxI GGCC 3 cut(s) 113, 325, 1371
ApeKI GCWGC 6 cut(s) 178, 524, 824, 929, 1310, 1398
ApoI RAATTY 2 cut(s) 195, 1376
Asp700I GAANNNNTTC 2 cut(s) 506, 900
AspLEI GCGC 1 cut(s) 1411
AspS9I GGNCC 1 cut(s) 326
AsuC2I CCSGG 1 cut(s) 425
AsuHPI GGTGA 3 cut(s) 280, 698, 1030
AvaI CYCGRG 1 cut(s) 81
BalI TGGCCA 1 cut(s) 115
BanII GRGCYC 2 cut(s) 224, 967
BauI CACGAG 1 cut(s) 460
BbsI GAAGAC 2 cut(s) 154, 1065
BbvCI CCTCAGC 1 cut(s) 1356
BbvI GCAGC 6 cut(s) 190, 511, 811, 941, 1322, 1410
BccI CCATC 5 cut(s) 105, 1012, 1089, 1177, 1316
BceAI ACGGC 1 cut(s) 1037
BciT130I CCWGG 4 cut(s) 99, 225, 630, 1239
BciVI GTATCC 1 cut(s) 1070
BcnI CCSGG 1 cut(s) 425
BfaI CTAG 4 cut(s) 174, 893, 972, 1432
BfmI CTRYAG 1 cut(s) 591
BfoI RGCGCY 1 cut(s) 1412
BfuI GTATCC 1 cut(s) 1070
BglII AGATCT 1 cut(s) 730
BisI GCNGC 7 cut(s) 179, 525, 825, 930, 1311, 1314, 1399
BlpI GCTNAGC 1 cut(s) 671
BlsI GCNGC 7 cut(s) 180, 526, 826, 931, 1312, 1315, 1400
BmcAI AGTACT 1 cut(s) 1391
Bme1390I CCNGG 5 cut(s) 99, 225, 425, 630, 1239
BmeRI GACNNNNNGTC 1 cut(s) 463
BmeT110I CYCGRG 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 2 cut(s) 221, 328
BmrFI CCNGG 5 cut(s) 99, 225, 425, 630, 1239
BmsI GCATC 2 cut(s) 222, 394
BpiI GAAGAC 2 cut(s) 154, 1065
BpmI CTGGAG 1 cut(s) 81
Bpu10I CCTNAGC 2 cut(s) 828, 1356
Bpu1102I GCTNAGC 1 cut(s) 671
BpuMI CCSGG 1 cut(s) 425
BsaHI GRCGYC 1 cut(s) 1316
BsaJI CCNNGG 5 cut(s) 223, 330, 399, 453, 1402
BsaWI WCCGGW 2 cut(s) 255, 1116
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 1326, 1361, 1380
Bse1I ACTGG 3 cut(s) 949, 990, 1349
Bse3DI GCAATG 2 cut(s) 438, 1225
BseAI TCCGGA 1 cut(s) 1116
BseBI CCWGG 4 cut(s) 99, 225, 630, 1239
BseDI CCNNGG 5 cut(s) 223, 330, 399, 453, 1402
BseGI GGATG 5 cut(s) 116, 409, 766, 1023, 1100
BseLI CCNNNNNNNGG 4 cut(s) 122, 1326, 1361, 1380
BseMI GCAATG 2 cut(s) 438, 1225
BseMII CTCAG 5 cut(s) 287, 842, 970, 1251, 1370
BseNI ACTGG 3 cut(s) 949, 990, 1349
BseXI GCAGC 6 cut(s) 190, 511, 811, 941, 1322, 1410
Bsh1285I CGRYCG 1 cut(s) 544
BshFI GGCC 3 cut(s) 115, 327, 1373
BsiEI CGRYCG 1 cut(s) 544
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 5 cut(s) 256, 425, 1117, 1370, 1395
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 4 cut(s) 122, 1326, 1361, 1380
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 3 cut(s) 115, 327, 1373
BsoBI CYCGRG 1 cut(s) 81
Bsp1286I GDGCHC 2 cut(s) 224, 967
Bsp13I TCCGGA 1 cut(s) 1116
Bsp143I GATC 3 cut(s) 730, 792, 1083
Bsp1720I GCTNAGC 1 cut(s) 671
BspACI CCGC 1 cut(s) 1313
BspANI GGCC 3 cut(s) 115, 327, 1373
BspCNI CTCAG 5 cut(s) 286, 841, 969, 1252, 1369
BspEI TCCGGA 1 cut(s) 1116
BspLI GGNNCC 2 cut(s) 221, 328
BspPI GGATC 2 cut(s) 787, 1078
BspQI GCTCTTC 1 cut(s) 640
BsrDI GCAATG 2 cut(s) 438, 1225
BsrI ACTGG 3 cut(s) 949, 990, 1349
BssECI CCNNGG 5 cut(s) 223, 330, 399, 453, 1402
BssMI GATC 3 cut(s) 730, 792, 1083
BssNI GRCGYC 1 cut(s) 1316
BssSI CACGAG 1 cut(s) 460
BssT1I CCWWGG 3 cut(s) 399, 453, 1402
Bst2BI CACGAG 1 cut(s) 460
Bst2UI CCWGG 4 cut(s) 99, 225, 630, 1239
Bst4CI ACNGT 4 cut(s) 10, 23, 396, 592
Bst6I CTCTTC 1 cut(s) 640
BstACI GRCGYC 1 cut(s) 1316
BstAPI GCANNNNNTGC 1 cut(s) 926
BstC8I GCNNGC 1 cut(s) 1024
BstDEI CTNAG 7 cut(s) 273, 418, 671, 828, 956, 1260, 1356
BstENI CCTNNNNNAGG 1 cut(s) 1359
BstF5I GGATG 5 cut(s) 116, 409, 766, 1023, 1100
BstH2I RGCGCY 1 cut(s) 1412
BstHHI GCGC 1 cut(s) 1411
BstKTI GATC 3 cut(s) 733, 795, 1086
BstMBI GATC 3 cut(s) 730, 792, 1083
BstMCI CGRYCG 1 cut(s) 544
BstMWI GCNNNNNNNGC 1 cut(s) 926
BstNI CCWGG 4 cut(s) 99, 225, 630, 1239
BstNSI RCATGY 1 cut(s) 874
BstSCI CCNGG 5 cut(s) 97, 223, 423, 628, 1237
BstSFI CTRYAG 1 cut(s) 591
BstV1I GCAGC 6 cut(s) 190, 511, 811, 941, 1322, 1410
BstV2I GAAGAC 2 cut(s) 154, 1065
BstX2I RGATCY 2 cut(s) 730, 792
BstXI CCANNNNNNTGG 1 cut(s) 215
BstYI RGATCY 2 cut(s) 730, 792
BsuI GTATCC 1 cut(s) 1070
BsuRI GGCC 3 cut(s) 115, 327, 1373
BtsCI GGATG 5 cut(s) 116, 409, 766, 1023, 1100
BtsIMutI CAGTG 2 cut(s) 392, 588
Cac8I GCNNGC 1 cut(s) 1024
CfoI GCGC 1 cut(s) 1411
Cfr13I GGNCC 1 cut(s) 326
CseI GACGC 1 cut(s) 1305
Csp6I GTAC 3 cut(s) 1103, 1352, 1390
CviAII CATG 1 cut(s) 871
CviQI GTAC 3 cut(s) 1103, 1352, 1390
DdeI CTNAG 7 cut(s) 273, 418, 671, 828, 956, 1260, 1356
DpnI GATC 3 cut(s) 732, 794, 1085
DpnII GATC 3 cut(s) 730, 792, 1083
DriI GACNNNNNGTC 1 cut(s) 463
EaeI YGGCCR 2 cut(s) 113, 1371
Eam1104I CTCTTC 1 cut(s) 640
Eam1105I GACNNNNNGTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 640
Eco130I CCWWGG 3 cut(s) 399, 453, 1402
Eco24I GRGCYC 2 cut(s) 224, 967
Eco47III AGCGCT 1 cut(s) 1410
Eco57I CTGAAG 1 cut(s) 1027
Eco88I CYCGRG 1 cut(s) 81
EcoNI CCTNNNNNAGG 1 cut(s) 1359
EcoRII CCWGG 4 cut(s) 97, 223, 628, 1237
EcoT14I CCWWGG 3 cut(s) 399, 453, 1402
EcoT38I GRGCYC 2 cut(s) 224, 967
ErhI CCWWGG 3 cut(s) 399, 453, 1402
FaeI CATG 1 cut(s) 874
FalI AAGNNNNNCTT 2 cut(s) 638, 670
FaqI GGGAC 1 cut(s) 407
FatI CATG 1 cut(s) 870
FblI GTMKAC 1 cut(s) 594
Fnu4HI GCNGC 7 cut(s) 179, 525, 825, 930, 1311, 1314, 1399
FokI GGATG 5 cut(s) 123, 416, 773, 1030, 1107
FriOI GRGCYC 2 cut(s) 224, 967
Fsp4HI GCNGC 7 cut(s) 179, 525, 825, 930, 1311, 1314, 1399
FspBI CTAG 4 cut(s) 174, 893, 972, 1432
GlaI GCGC 1 cut(s) 1410
GluI GCNGC 7 cut(s) 179, 525, 825, 930, 1311, 1314, 1399
GsuI CTGGAG 1 cut(s) 81
HaeII RGCGCY 1 cut(s) 1412
HaeIII GGCC 3 cut(s) 115, 327, 1373
HapII CCGG 5 cut(s) 256, 425, 1117, 1370, 1395
HgaI GACGC 1 cut(s) 1305
HhaI GCGC 1 cut(s) 1411
Hin1I GRCGYC 1 cut(s) 1316
Hin1II CATG 1 cut(s) 874
Hin6I GCGC 1 cut(s) 1409
HinP1I GCGC 1 cut(s) 1409
HincII GTYRAC 2 cut(s) 484, 1291
HindII GTYRAC 2 cut(s) 484, 1291
HindIII AAGCTT 3 cut(s) 89, 673, 742
HinfI GANTC 5 cut(s) 271, 389, 458, 859, 1330
HpaI GTTAAC 1 cut(s) 1291
HpaII CCGG 5 cut(s) 256, 425, 1117, 1370, 1395
HphI GGTGA 3 cut(s) 280, 698, 1030
Hpy166II GTNNAC 4 cut(s) 484, 510, 595, 1291
Hpy188I TCNGA 4 cut(s) 886, 1046, 1088, 1321
Hpy188III TCNNGA 9 cut(s) 202, 412, 724, 830, 850, 893, 1117, 1136, 1173
Hpy8I GTNNAC 4 cut(s) 484, 510, 595, 1291
HpyAV CCTTC 3 cut(s) 660, 1051, 1093
HpyCH4III ACNGT 4 cut(s) 10, 23, 396, 592
HpyCH4IV ACGT 2 cut(s) 1062, 1202
HpyCH4V TGCA 3 cut(s) 136, 874, 929
HpyF10VI GCNNNNNNNGC 1 cut(s) 926
HpyF3I CTNAG 7 cut(s) 273, 418, 671, 828, 956, 1260, 1356
HpySE526I ACGT 2 cut(s) 1062, 1202
Hsp92I GRCGYC 1 cut(s) 1316
Hsp92II CATG 1 cut(s) 874
HspAI GCGC 1 cut(s) 1409
Kpn2I TCCGGA 1 cut(s) 1116
KspAI GTTAAC 1 cut(s) 1291
Kzo9I GATC 3 cut(s) 730, 792, 1083
LguI GCTCTTC 1 cut(s) 640
LmnI GCTCC 2 cut(s) 219, 1406
Lsp1109I GCAGC 6 cut(s) 190, 511, 811, 941, 1322, 1410
LweI GCATC 2 cut(s) 222, 394
MaeI CTAG 4 cut(s) 174, 893, 972, 1432
MaeII ACGT 2 cut(s) 1062, 1202
MaeIII GTNAC 2 cut(s) 268, 602
MalI GATC 3 cut(s) 732, 794, 1085
MboI GATC 3 cut(s) 730, 792, 1083
MboII GAAGA 7 cut(s) 154, 334, 387, 514, 529, 627, 1070
MfeI CAATTG 1 cut(s) 607
MflI RGATCY 2 cut(s) 730, 792
MhlI GDGCHC 2 cut(s) 224, 967
MlsI TGGCCA 1 cut(s) 115
MluNI TGGCCA 1 cut(s) 115
MlyI GAGTC 2 cut(s) 265, 452
MnlI CCTC 7 cut(s) 105, 241, 340, 931, 1008, 1295, 1365
Mox20I TGGCCA 1 cut(s) 115
MroI TCCGGA 1 cut(s) 1116
MroXI GAANNNNTTC 2 cut(s) 506, 900
MscI TGGCCA 1 cut(s) 115
MseI TTAA 4 cut(s) 288, 677, 779, 1290
MslI CAYNNNNRTG 1 cut(s) 351
Msp20I TGGCCA 1 cut(s) 115
MspA1I CMGCKG 1 cut(s) 1313
MspI CCGG 5 cut(s) 256, 425, 1117, 1370, 1395
MspR9I CCNGG 5 cut(s) 99, 225, 425, 630, 1239
MunI CAATTG 1 cut(s) 607
MvaI CCWGG 4 cut(s) 99, 225, 630, 1239
MwoI GCNNNNNNNGC 1 cut(s) 926
NciI CCSGG 1 cut(s) 425
NdeII GATC 3 cut(s) 730, 792, 1083
NlaIII CATG 1 cut(s) 874
NlaIV GGNNCC 2 cut(s) 221, 328
NmeAIII GCCGAG 1 cut(s) 311
NmuCI GTSAC 1 cut(s) 268
NspI RCATGY 1 cut(s) 874
PciSI GCTCTTC 1 cut(s) 640
PdmI GAANNNNTTC 2 cut(s) 506, 900
PfeI GAWTC 3 cut(s) 389, 859, 1330
PflMI CCANNNNNTGG 2 cut(s) 122, 1380
PfoI TCCNGGA 2 cut(s) 423, 1237
PkrI GCNGC 7 cut(s) 180, 526, 826, 931, 1312, 1315, 1400
PleI GAGTC 2 cut(s) 265, 452
PpsI GAGTC 2 cut(s) 265, 452
Psp6I CCWGG 4 cut(s) 97, 223, 628, 1237
PspGI CCWGG 4 cut(s) 97, 223, 628, 1237
PspN4I GGNNCC 2 cut(s) 221, 328
PspPI GGNCC 1 cut(s) 326
PsrI GAACNNNNNNTAC 2 cut(s) 542, 574
PsuI RGATCY 2 cut(s) 730, 792
RsaI GTAC 3 cut(s) 1104, 1353, 1391
RsaNI GTAC 3 cut(s) 1103, 1352, 1390
RseI CAYNNNNRTG 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 640
SaqAI TTAA 4 cut(s) 288, 677, 779, 1290
SatI GCNGC 7 cut(s) 179, 525, 825, 930, 1311, 1314, 1399
Sau3AI GATC 3 cut(s) 730, 792, 1083
Sau96I GGNCC 1 cut(s) 326
ScaI AGTACT 1 cut(s) 1391
SchI GAGTC 2 cut(s) 265, 452
ScrFI CCNGG 5 cut(s) 99, 225, 425, 630, 1239
SduI GDGCHC 2 cut(s) 224, 967
SfaNI GCATC 2 cut(s) 222, 394
SfcI CTRYAG 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 351
SsiI CCGC 1 cut(s) 1313
SspMI CTAG 4 cut(s) 174, 893, 972, 1432
StyD4I CCNGG 5 cut(s) 97, 223, 423, 628, 1237
StyI CCWWGG 3 cut(s) 399, 453, 1402
TaaI ACNGT 4 cut(s) 10, 23, 396, 592
TaiI ACGT 2 cut(s) 1065, 1205
TaqI TCGA 1 cut(s) 723
TaqII GACCGA 2 cut(s) 530, 640
TatI WGTACW 1 cut(s) 1389
TauI GCSGC 1 cut(s) 1316
TfiI GAWTC 3 cut(s) 389, 859, 1330
Tru1I TTAA 4 cut(s) 288, 677, 779, 1290
Tru9I TTAA 4 cut(s) 288, 677, 779, 1290
TscAI CASTG 2 cut(s) 399, 595
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 6 cut(s) 178, 524, 824, 929, 1310, 1398
Tsp45I GTSAC 1 cut(s) 268
TspRI CASTG 2 cut(s) 399, 595
Van91I CCANNNNNTGG 2 cut(s) 122, 1380
XagI CCTNNNNNAGG 1 cut(s) 1359
XapI RAATTY 2 cut(s) 195, 1376
XbaI TCTAGA 1 cut(s) 892
XceI RCATGY 1 cut(s) 874
XcmI CCANNNNNNNNNTGG 1 cut(s) 451
XmiI GTMKAC 1 cut(s) 594
XmnI GAANNNNTTC 2 cut(s) 506, 900
XspI CTAG 4 cut(s) 174, 893, 972, 1432
ZrmI AGTACT 1 cut(s) 1391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.