Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002224

Physical Location & Seq

Genomic Coordinates Reverse (-)

51024584 .. 51026635

Gene Structure 2052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0362000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCGGGTGGTGGAAAGGTGTCATTCAAGGTTACTCTAACCTCCGATCCAAAGCTGCCCTTCAAAGTGTTTAGCGTTCCAGAGGCAGCCCCTTTCACCGCCGTGCTCAAATTCGCAGCCGAGGAATTCAAAGTGCCTCCCCAGACCAGCGCCATCATCACCAACGATGGTGTTGGAATTAACCCTCAGCAAAGTGCAGGCAATGTATTCCTCAAGCATGGTTCGGAACTGCGCCTAATTCCTCGCGATAGGGTTGGAGCTTTTGGGACAATCGACGCAGCATTACCATCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010295 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

98

Amino Acids

10.28

Weight (kDa)

9.22

Isoelectric Point (pI)

28.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufm1	PF03671	6 - 80	1.5e-42	Ubiquitin fold modifier 1 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19270 AT3G19270
fragaria_vesca	FvH4_2g06010 FvH4_2g34420
malus_domestica	MD02G1171600.v1.1 MD05G1081400.v1.1 MD08G1101400.v1.1 MD15G1082600.v1.1 MD15G1283400.v1.1
prunus_persica	Prupe.1G435300_v2.0.a1 Prupe.7G133800_v2.0.a1 Prupe.8G125800_v2.0.a1
pyrus_communis	pycom02g13830 pycom05g07510 pycom08g08190 pycom15g07740
rosa_chinensis	RchiOBHm_Chr2g0105591 RchiOBHm_Chr6g0257401 RchiOBHm_Chr6g0307951
rosa_laevigata	RLG00000010684 RLG00000014690 RLG00000017443
rosa_multiflora	Rmu_sc0000820.1_g000025 Rmu_sc0003252.1_g000022
rosa_roxburghii	Rroxscaffold_2G00138090 Rroxscaffold_7G00160740 Rroxscaffold_7G00208630
rosa_rugosa	Rorug02G0128400 Rorug02G0128500 Rorug05G0573200 Rorug06G0362000
rosa_samantha	Rh2AG180300 Rh2CG184500 Rh2DG186100 Rh6AG090500 Rh6AG471000 Rh6BG482000 Rh6CG078300 Rh6CG487400 Rh6DG074100 Rh6DG473500
rosa_wichuraiana	Rw6G007900 Rw6G041130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	246
AciI	CCGC	2 cut(s)	5, 99
AclWI	GGATC	1 cut(s)	41
AcsI	RAATTY	2 cut(s)	110, 125
AgsI	TTSAA	3 cut(s)	28, 64, 130
AleI	CACNNNNGTG	1 cut(s)	101
AluBI	AGCT	2 cut(s)	55, 260
AluI	AGCT	2 cut(s)	55, 260
Alw21I	GWGCWC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	41
ApeKI	GCWGC	4 cut(s)	55, 86, 116, 278
ApoI	RAATTY	2 cut(s)	110, 125
AspLEI	GCGC	2 cut(s)	152, 234
AsuHPI	GGTGA	2 cut(s)	88, 151
Bbv12I	GWGCWC	1 cut(s)	108
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	4 cut(s)	42, 98, 128, 290
BccI	CCATC	3 cut(s)	161, 161, 295
BceAI	ACGGC	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	153
BisI	GCNGC	4 cut(s)	56, 87, 117, 279
BlsI	GCNGC	4 cut(s)	57, 88, 118, 280
Bpu10I	CCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	287
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	200
BseXI	GCAGC	4 cut(s)	42, 98, 128, 290
BsgI	GTGCAG	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	46
Bsp68I	TCGCGA	1 cut(s)	246
BspACI	CCGC	2 cut(s)	5, 99
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	246
BspPI	GGATC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	287
BstFNI	CGCG	1 cut(s)	246
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	2 cut(s)	152, 234
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	4 cut(s)	42, 98, 128, 290
BtsCI	GGATG	1 cut(s)	287
BtuMI	TCGCGA	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	199
CfoI	GCGC	2 cut(s)	152, 234
CseI	GACGC	1 cut(s)	284
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	4 cut(s)	55, 89, 119, 260
CviKI_1	RGCY	4 cut(s)	55, 89, 119, 260
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
EcoRI	GAATTC	1 cut(s)	125
FaeI	CATG	1 cut(s)	221
FaiI	YATR	1 cut(s)	219
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	1 cut(s)	217
Fnu4HI	GCNGC	4 cut(s)	56, 87, 117, 279
FokI	GGATG	1 cut(s)	274
Fsp4HI	GCNGC	4 cut(s)	56, 87, 117, 279
GlaI	GCGC	2 cut(s)	151, 233
GluI	GCNGC	4 cut(s)	56, 87, 117, 279
HaeII	RGCGCY	1 cut(s)	153
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	2 cut(s)	152, 234
Hin1II	CATG	1 cut(s)	221
Hin6I	GCGC	2 cut(s)	150, 232
HinP1I	GCGC	2 cut(s)	150, 232
HphI	GGTGA	2 cut(s)	88, 151
Hpy188I	TCNGA	2 cut(s)	46, 226
Hpy188III	TCNNGA	2 cut(s)	80, 245
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	70
HpyCH4V	TGCA	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	221
HspAI	GCGC	2 cut(s)	150, 232
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	4 cut(s)	93, 155, 160, 183
Lsp1109I	GCAGC	4 cut(s)	42, 98, 128, 290
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	4 cut(s)	110, 125, 177, 237
MmeI	TCCRAC	2 cut(s)	154, 235
MnlI	CCTC	7 cut(s)	52, 76, 115, 147, 195, 221, 252
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	246
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	221
NmeAIII	GCCGAG	1 cut(s)	145
NruI	TCGCGA	1 cut(s)	246
OliI	CACNNNNGTG	1 cut(s)	101
PkrI	GCNGC	4 cut(s)	57, 88, 118, 280
RruI	TCGCGA	1 cut(s)	246
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	4 cut(s)	56, 87, 117, 279
Sau3AI	GATC	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	5 cut(s)	21, 33, 44, 57, 262
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	4 cut(s)	110, 125, 177, 237
SsiI	CCGC	2 cut(s)	5, 99
TaqI	TCGA	1 cut(s)	273
TasI	AATT	4 cut(s)	110, 125, 177, 237
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TseI	GCWGC	4 cut(s)	55, 86, 116, 278
XapI	RAATTY	2 cut(s)	110, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.