Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002224

Physical Location & Seq

Genomic Coordinates Forward (+)

6614167 .. 6617203

Gene Structure 3037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g08190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGATGCAATTTTGACCTACGTTTTCATCTGTCTCTGCACCCTTTTGTCATTTGTATTTTTCATGAAAAGGGACAAGAGAGGAGGGGAAGCACCCCAGAAAAGGGCTCAGCTCCCTCCAGGTTCATTAGGTTGGCCTTATATAGGAGAGACCCTTCAGCTCTATTCTCAAAACCCAAATACTTTCTTTTCTTCCAAACAGAAAAGGTACGGAGAGATTTTCAAGACGCATATTCTGGGATGTCCAAGTATCATGCTGGCGAGCCCTGAGGCCGCGAAGTTTGTGTTGGTGACTCAAGCTCACTTGTTCAAGCCCACGTATCCCGAAAGCAAAGAGCGTTTGCTTGGTCCATCTGCACTGTTTTATCACCAAGGAGATTACCATATGCGGATGAGGAAATTAGTTCAAGGATCTCTATCCCTTGATATTATTCGAAATTTGGTGCCTCATATTGAAGGCTTAGCTGTTTCTGCCACATACTCCTGGGCCACTGGCCAAGTCATCGACACCTTCCATGAAATGAAGAAGTTATCTTTCGAGGTTGGTATAATTGCAATTTTTGGCAATTTGGAGGCACATTACAAAGAAGAGCTCAAGAGGAATTACACCATCGTGGACAGAGGCTACAATTCATTCCCCACAAACATTCCGGGCACACCATACAAAAAGGCAAGGAAAAGACTAAGAGTAATTTTGGGTGATATTATATGTGAGAGGAGGGAGAAAATATTACTTGGGAAAGATCTTTTGGGTTGCATGTTGAACTCAAAAGATGAAAAGGGTGAAGTCTTAACGGATGACCAAATTACTGACAACATTTTGGGGGTGCTTTTTGCTGCTCAAGACACTACAGCTAGTGTGATGACCTGGATTGTCAAGTACCTCCACGATGACCCCAAACTTTTAGAGGCTGTAAAGGTTGCACCAAAGCCAAATACATTTATGCCATTTGGAAGTGGAGTGCATGCCTGTCCGGGAAACGAGCTTGCAAAGCTGGAAATGCTGGTTATGATGCACCATTTGGTCACCAAGTTGAAGTGGGAAGTAGTGGGTTCCCAAAGTGAGATTCAATATAGCCCATTTCCTGTGCCTCTGCATGGACTCCCAGCAAAATTTTGGAAACAATTTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010295 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

378

Amino Acids

42.64

Weight (kDa)

9.08

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	39 - 305	8e-24	Cytochrome P450
p450	PF00067	310 - 354	1.1e-09	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19270 AT3G19270
fragaria_vesca	FvH4_2g06010 FvH4_2g34420
malus_domestica	MD02G1171600.v1.1 MD05G1081400.v1.1 MD08G1101400.v1.1 MD15G1082600.v1.1 MD15G1283400.v1.1
prunus_persica	Prupe.1G435300_v2.0.a1 Prupe.7G133800_v2.0.a1 Prupe.8G125800_v2.0.a1
pyrus_communis	pycom02g13830 pycom05g07510 pycom08g08190 pycom15g07740
rosa_chinensis	RchiOBHm_Chr2g0105591 RchiOBHm_Chr6g0257401 RchiOBHm_Chr6g0307951
rosa_laevigata	RLG00000010684 RLG00000014690 RLG00000017443
rosa_multiflora	Rmu_sc0000820.1_g000025 Rmu_sc0003252.1_g000022
rosa_roxburghii	Rroxscaffold_2G00138090 Rroxscaffold_7G00160740 Rroxscaffold_7G00208630
rosa_rugosa	Rorug02G0128400 Rorug02G0128500 Rorug05G0573200 Rorug06G0362000
rosa_samantha	Rh2AG180300 Rh2CG184500 Rh2DG186100 Rh6AG090500 Rh6AG471000 Rh6BG482000 Rh6CG078300 Rh6CG487400 Rh6DG074100 Rh6DG473500
rosa_wichuraiana	Rw6G007900 Rw6G041130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	442
AccII	CGCG	1 cut(s)	275
AciI	CCGC	2 cut(s)	273, 388
AclWI	GGATC	1 cut(s)	418
AcoI	YGGCCR	1 cut(s)	493
AcsI	RAATTY	2 cut(s)	436, 1112
AcuI	CTGAAG	1 cut(s)	140
AfaI	GTAC	2 cut(s)	209, 881
AfiI	CCNNNNNNNGG	4 cut(s)	102, 103, 143, 1097
AgsI	TTSAA	7 cut(s)	223, 310, 407, 455, 763, 1036, 1070
AjnI	CCWGG	3 cut(s)	118, 482, 866
AjuI	GAANNNNNNNTTGG	6 cut(s)	269, 301, 731, 763, 1050, 1082
AleI	CACNNNNGTG	1 cut(s)	611
AluBI	AGCT	8 cut(s)	112, 160, 299, 464, 592, 854, 985, 994
AluI	AGCT	8 cut(s)	112, 160, 299, 464, 592, 854, 985, 994
Alw21I	GWGCWC	1 cut(s)	594
Alw26I	GTCTC	2 cut(s)	38, 143
AlwI	GGATC	1 cut(s)	418
AoxI	GGCC	4 cut(s)	134, 270, 486, 493
ApeKI	GCWGC	1 cut(s)	836
ApoI	RAATTY	2 cut(s)	436, 1112
AspS9I	GGNCC	2 cut(s)	347, 486
AsuC2I	CCSGG	2 cut(s)	651, 975
AsuHPI	GGTGA	5 cut(s)	301, 359, 710, 794, 1018
AsuII	TTCGAA	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	347
AxyI	CCTNAGG	1 cut(s)	267
BaeGI	GKGCMC	1 cut(s)	656
BalI	TGGCCA	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	442
BanII	GRGCYC	3 cut(s)	109, 266, 594
Bbv12I	GWGCWC	1 cut(s)	594
BbvI	GCAGC	1 cut(s)	823
BccI	CCATC	2 cut(s)	358, 617
BciT130I	CCWGG	3 cut(s)	120, 484, 868
BciVI	GTATCC	1 cut(s)	330
BcnI	CCSGG	2 cut(s)	651, 975
BcoDI	GTCTC	2 cut(s)	38, 143
BfaI	CTAG	1 cut(s)	855
BfmI	CTRYAG	1 cut(s)	849
BfuI	GTATCC	1 cut(s)	330
BglII	AGATCT	1 cut(s)	742
BisI	GCNGC	2 cut(s)	273, 837
BlpI	GCTNAGC	2 cut(s)	108, 460
BlsI	GCNGC	2 cut(s)	274, 838
Bme1390I	CCNGG	5 cut(s)	120, 484, 651, 868, 975
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	2 cut(s)	347, 486
BmiI	GGNNCC	2 cut(s)	444, 1054
BmrFI	CCNGG	5 cut(s)	120, 484, 651, 868, 975
BmsI	GCATC	1 cut(s)	1002
BpmI	CTGGAG	1 cut(s)	102
Bpu1102I	GCTNAGC	2 cut(s)	108, 460
Bpu14I	TTCGAA	1 cut(s)	433
BpuEI	CTTGAG	3 cut(s)	279, 578, 825
BpuMI	CCSGG	2 cut(s)	651, 975
BsaAI	YACGTR	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	415
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	370, 483
Bsc4I	CCNNNNNNNGG	4 cut(s)	102, 103, 143, 1097
Bse1I	ACTGG	1 cut(s)	496
Bse21I	CCTNAGG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	415
BseBI	CCWGG	3 cut(s)	120, 484, 868
BseDI	CCNNGG	2 cut(s)	370, 483
BseGI	GGATG	4 cut(s)	10, 245, 396, 802
BseJI	GATNNNNATC	1 cut(s)	415
BseLI	CCNNNNNNNGG	4 cut(s)	102, 103, 143, 1097
BseMII	CTCAG	2 cut(s)	122, 258
BseNI	ACTGG	1 cut(s)	496
BseRI	GAGGAG	2 cut(s)	96, 730
BseSI	GKGCMC	1 cut(s)	656
BseXI	GCAGC	1 cut(s)	823
BseYI	CCCAGC	1 cut(s)	1105
BsgI	GTGCAG	2 cut(s)	22, 339
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	4 cut(s)	136, 272, 488, 495
BshNI	GGYRCC	1 cut(s)	442
BsiHKAI	GWGCWC	1 cut(s)	594
BsiSI	CCGG	2 cut(s)	650, 974
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	4 cut(s)	102, 103, 143, 1097
BsmAI	GTCTC	2 cut(s)	38, 143
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	4 cut(s)	136, 272, 488, 495
Bso31I	GGTCTC	1 cut(s)	143
Bsp119I	TTCGAA	1 cut(s)	433
Bsp1286I	GDGCHC	4 cut(s)	109, 266, 594, 656
Bsp143I	GATC	2 cut(s)	410, 742
Bsp1720I	GCTNAGC	2 cut(s)	108, 460
BspACI	CCGC	2 cut(s)	273, 388
BspANI	GGCC	4 cut(s)	136, 272, 488, 495
BspCNI	CTCAG	2 cut(s)	121, 259
BspFNI	CGCG	1 cut(s)	275
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	444, 1054
BspPI	GGATC	1 cut(s)	418
BspQI	GCTCTTC	1 cut(s)	582
BspT104I	TTCGAA	1 cut(s)	433
BspT107I	GGYRCC	1 cut(s)	442
BspTNI	GGTCTC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	496
BssECI	CCNNGG	2 cut(s)	370, 483
BssMI	GATC	2 cut(s)	410, 742
BssT1I	CCWWGG	1 cut(s)	370
Bst2UI	CCWGG	3 cut(s)	120, 484, 868
Bst4CI	ACNGT	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	582
BstBAI	YACGTR	1 cut(s)	318
BstBI	TTCGAA	1 cut(s)	433
BstC8I	GCNNGC	4 cut(s)	258, 262, 966, 987
BstDEI	CTNAG	4 cut(s)	108, 267, 460, 683
BstEII	GGTNACC	1 cut(s)	1024
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	4 cut(s)	10, 245, 396, 802
BstFNI	CGCG	1 cut(s)	275
BstKTI	GATC	2 cut(s)	413, 745
BstMAI	GTCTC	2 cut(s)	38, 143
BstMBI	GATC	2 cut(s)	410, 742
BstMWI	GCNNNNNNNGC	3 cut(s)	470, 991, 1000
BstNI	CCWGG	3 cut(s)	120, 484, 868
BstNSI	RCATGY	2 cut(s)	760, 968
BstPI	GGTNACC	1 cut(s)	1024
BstSCI	CCNGG	5 cut(s)	118, 482, 649, 866, 973
BstSFI	CTRYAG	1 cut(s)	849
BstSLI	GKGCMC	1 cut(s)	656
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	823
BstX2I	RGATCY	2 cut(s)	410, 742
BstYI	RGATCY	2 cut(s)	410, 742
Bsu36I	CCTNAGG	1 cut(s)	267
BsuI	GTATCC	1 cut(s)	330
BsuRI	GGCC	4 cut(s)	136, 272, 488, 495
BtsCI	GGATG	4 cut(s)	10, 245, 396, 802
BtsIMutI	CAGTG	2 cut(s)	356, 489
Cac8I	GCNNGC	4 cut(s)	258, 262, 966, 987
CciI	TCATGA	1 cut(s)	63
Cfr13I	GGNCC	2 cut(s)	347, 486
CseI	GACGC	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	208, 880
CviAII	CATG	6 cut(s)	64, 253, 515, 757, 965, 1097
CviQI	GTAC	2 cut(s)	208, 880
DdeI	CTNAG	4 cut(s)	108, 267, 460, 683
DpnI	GATC	2 cut(s)	412, 744
DpnII	GATC	2 cut(s)	410, 742
EaeI	YGGCCR	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
Ecl136II	GAGCTC	1 cut(s)	592
Eco130I	CCWWGG	1 cut(s)	370
Eco24I	GRGCYC	3 cut(s)	109, 266, 594
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	347
Eco53kI	GAGCTC	1 cut(s)	592
Eco57I	CTGAAG	1 cut(s)	140
Eco81I	CCTNAGG	1 cut(s)	267
Eco91I	GGTNACC	1 cut(s)	1024
EcoICRI	GAGCTC	1 cut(s)	592
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoO65I	GGTNACC	1 cut(s)	1024
EcoRII	CCWGG	3 cut(s)	118, 482, 866
EcoT14I	CCWWGG	1 cut(s)	370
EcoT38I	GRGCYC	3 cut(s)	109, 266, 594
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	6 cut(s)	67, 256, 518, 760, 968, 1100
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	6 cut(s)	63, 252, 514, 756, 964, 1096
FauNDI	CATATG	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	273, 837
FokI	GGATG	4 cut(s)	17, 252, 403, 809
FriOI	GRGCYC	3 cut(s)	109, 266, 594
Fsp4HI	GCNGC	2 cut(s)	273, 837
FspBI	CTAG	1 cut(s)	855
GluI	GCNGC	2 cut(s)	273, 837
GsaI	CCCAGC	1 cut(s)	1109
GsuI	CTGGAG	1 cut(s)	102
HaeIII	GGCC	4 cut(s)	136, 272, 488, 495
HapII	CCGG	2 cut(s)	650, 974
HgaI	GACGC	1 cut(s)	235
Hin1II	CATG	6 cut(s)	67, 256, 518, 760, 968, 1100
HinfI	GANTC	3 cut(s)	292, 1066, 1101
HpaII	CCGG	2 cut(s)	650, 974
HphI	GGTGA	5 cut(s)	301, 359, 710, 794, 1018
Hpy166II	GTNNAC	1 cut(s)	616
Hpy188III	TCNNGA	5 cut(s)	64, 223, 323, 595, 842
Hpy8I	GTNNAC	1 cut(s)	616
HpyAV	CCTTC	3 cut(s)	164, 449, 520
HpyCH4III	ACNGT	1 cut(s)	360
HpyCH4IV	ACGT	2 cut(s)	21, 317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	470, 991, 1000
HpyF3I	CTNAG	4 cut(s)	108, 267, 460, 683
HpySE526I	ACGT	2 cut(s)	21, 317
Hsp92II	CATG	6 cut(s)	67, 256, 518, 760, 968, 1100
Kzo9I	GATC	2 cut(s)	410, 742
LguI	GCTCTTC	1 cut(s)	582
LmnI	GCTCC	1 cut(s)	117
Lsp1109I	GCAGC	1 cut(s)	823
LweI	GCATC	1 cut(s)	1002
MaeI	CTAG	1 cut(s)	855
MaeII	ACGT	2 cut(s)	21, 317
MaeIII	GTNAC	2 cut(s)	289, 1024
MalI	GATC	2 cut(s)	412, 744
MboI	GATC	2 cut(s)	410, 742
MboII	GAAGA	3 cut(s)	183, 535, 599
MflI	RGATCY	2 cut(s)	410, 742
MhlI	GDGCHC	4 cut(s)	109, 266, 594, 656
MlsI	TGGCCA	1 cut(s)	495
MluNI	TGGCCA	1 cut(s)	495
MlyI	GAGTC	2 cut(s)	286, 1095
Mox20I	TGGCCA	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	1 cut(s)	791
MslI	CAYNNNNRTG	1 cut(s)	611
Msp20I	TGGCCA	1 cut(s)	495
MspI	CCGG	2 cut(s)	650, 974
MspR9I	CCNGG	5 cut(s)	120, 484, 651, 868, 975
MvaI	CCWGG	3 cut(s)	120, 484, 868
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	3 cut(s)	470, 991, 1000
NciI	CCSGG	2 cut(s)	651, 975
NdeI	CATATG	1 cut(s)	384
NdeII	GATC	2 cut(s)	410, 742
NlaIII	CATG	6 cut(s)	67, 256, 518, 760, 968, 1100
NlaIV	GGNNCC	2 cut(s)	444, 1054
NmuCI	GTSAC	2 cut(s)	289, 1024
NspI	RCATGY	2 cut(s)	760, 968
NspV	TTCGAA	1 cut(s)	433
OliI	CACNNNNGTG	1 cut(s)	611
PaeI	GCATGC	1 cut(s)	968
PagI	TCATGA	1 cut(s)	63
PciSI	GCTCTTC	1 cut(s)	582
PfeI	GAWTC	1 cut(s)	1066
PfoI	TCCNGGA	1 cut(s)	973
PkrI	GCNGC	2 cut(s)	274, 838
PleI	GAGTC	2 cut(s)	286, 1095
PpsI	GAGTC	2 cut(s)	286, 1095
Ppu21I	YACGTR	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	594
Psp6I	CCWGG	3 cut(s)	118, 482, 866
PspEI	GGTNACC	1 cut(s)	1024
PspFI	CCCAGC	1 cut(s)	1105
PspGI	CCWGG	3 cut(s)	118, 482, 866
PspN4I	GGNNCC	2 cut(s)	444, 1054
PspPI	GGNCC	2 cut(s)	347, 486
PsuI	RGATCY	2 cut(s)	410, 742
RsaI	GTAC	2 cut(s)	209, 881
RsaNI	GTAC	2 cut(s)	208, 880
RseI	CAYNNNNRTG	1 cut(s)	611
SacI	GAGCTC	1 cut(s)	594
SapI	GCTCTTC	1 cut(s)	582
SaqAI	TTAA	1 cut(s)	791
SatI	GCNGC	2 cut(s)	273, 837
Sau3AI	GATC	2 cut(s)	410, 742
Sau96I	GGNCC	2 cut(s)	347, 486
SchI	GAGTC	2 cut(s)	286, 1095
ScrFI	CCNGG	5 cut(s)	120, 484, 651, 868, 975
SduI	GDGCHC	4 cut(s)	109, 266, 594, 656
SfaNI	GCATC	1 cut(s)	1002
SfcI	CTRYAG	1 cut(s)	849
SfuI	TTCGAA	1 cut(s)	433
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	3 cut(s)	294, 593, 840
SmoI	CTYRAG	3 cut(s)	294, 593, 840
SphI	GCATGC	1 cut(s)	968
SsiI	CCGC	2 cut(s)	273, 388
SspI	AATATT	1 cut(s)	729
SspMI	CTAG	1 cut(s)	855
SstI	GAGCTC	1 cut(s)	594
StyD4I	CCNGG	5 cut(s)	118, 482, 649, 866, 973
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	360
TaiI	ACGT	2 cut(s)	24, 320
TaqI	TCGA	3 cut(s)	433, 504, 537
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	1066
Tru1I	TTAA	1 cut(s)	791
Tru9I	TTAA	1 cut(s)	791
TscAI	CASTG	2 cut(s)	363, 496
TseFI	GTSAC	2 cut(s)	289, 1024
TseI	GCWGC	1 cut(s)	836
Tsp45I	GTSAC	2 cut(s)	289, 1024
TspDTI	ATGAA	8 cut(s)	16, 52, 80, 114, 531, 536, 621, 789
TspGWI	ACGGA	2 cut(s)	225, 809
TspRI	CASTG	2 cut(s)	363, 496
VpaK11BI	GGWCC	1 cut(s)	347
XagI	CCTNNNNNAGG	1 cut(s)	141
XapI	RAATTY	2 cut(s)	436, 1112
XceI	RCATGY	2 cut(s)	760, 968
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1113
XspI	CTAG	1 cut(s)	855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.