Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002224

Physical Location & Seq

Genomic Coordinates Forward (+)

5007242 .. 5010419

Gene Structure 3178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGAGAAAATTGCTTCTACTTTGATATACATATTTATCTCTCTCTCAGCTCTGTTCTTATATCACTGCATAAAGAAACAAAAGAGAACATTTCTGCATAAGGCTAAGCTTCCCCCAGGCTCAATGGGGTGGCCTTGCATAGGAGAGACCCTGCAAATGTACTCTATGGACCCAAACATATTCTTTTCCACAAAGCAGAAGAGGTATGGAGACATATTCAAAACCCACATACTTGGCTGTCCTTGTGTCATGTTGGCAAGCCCTGAGGCCACAAAGTTTGTGCTGGTTACTCATGCTCACCTATTCAAGCCCACATACCCGAAAAGCAAGGAGAAGCTGATCGGCCCTTCTGCTTTGTTCTTTCACCAGGGAGATTACCACAGTAGTCTTAGGAAGCTCATTCAGAGCTCTCTGTCTCCAAACCCCAACACTATGCAGAAACTGGTTCCTGACATTGAAGCTTTAGCCATTTCTGCCTTGGAATCATGGGCTGCAGCCGGAACTGTCATCAACACCTATCATGAAATGAAGAAGTTTGTGTTTGATGTCGGCTTTCTTGCCATTTTTGGCCGATTGGATGATACTTACAGAGAGAAGCTCAAGCAGAACTACCACATGGTAGACAAGGGTTACAATTGTTTTCCAACAAACATGCCAGGCACTGCATATCACAAAGCTCTCTTGGCGAGGAAAAGGCTTAGTCAGATTCTGAGACAGATAATTTCTGAGAGGAAGGAAAAGAAAGTACTGCAGAAAGATCTCTTGGGTGATTTGCTGAACTTTCAAAATGAAAAGGGGCAAAACTTAAGCGAGGATCAAATTTCCGATAACATCATTGGAGTGCTGTTTGCAGCCCAAGACACTACAGCTAGTGTTCTAACATGGATTCTGAAGTACCTCCATGATAACCAAAACATTCTTGAAGCTGTGAAGGCTGAGCAGAAGGCAATATGTGATGCAAATGATGGGTGTAAGAGATCATTGACATGGGCACAAATCAGAAATATGCCGCTTACACATAGAGTTATATTAGAGAGTTTGAGGATGGCCAGCATCATATCTTTCGCATTTAGGGAAGCTGTGGTTGATGTTAAATACAAAGGATATCTCATACCAAAGGGTTGGAAGGTCATGCCATTGTTTAGGAACATACATCATAATCCTGAGTTCTTCTCTGCTCCTCAAAATTTTGATCCATCTAGGTTTGAGGTTGCTCCAAAGGCTTATACTTTCATACCATTTGGCAAAGGAGTACATGCTTGTCCTGGAAATGAGCTTGCCAAACTGGAGATGTTCATTTTGATCCACCATCTCGTGACTAGTTTCCGATGGGAAGTAGTGGGATCACAAAGTGGGATTCAATATGGCCCATTTCCAGTTCCTCAGCATGGACTACCAGCCAGATTTCTGAAAGAACAAGTGAATCCCAAACAAGATTTCCCGACCACTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010295 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

485

Amino Acids

55.09

Weight (kDa)

9.39

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	38 - 447	2.2e-75	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19270 AT3G19270
fragaria_vesca	FvH4_2g06010 FvH4_2g34420
malus_domestica	MD02G1171600.v1.1 MD05G1081400.v1.1 MD08G1101400.v1.1 MD15G1082600.v1.1 MD15G1283400.v1.1
prunus_persica	Prupe.1G435300_v2.0.a1 Prupe.7G133800_v2.0.a1 Prupe.8G125800_v2.0.a1
pyrus_communis	pycom02g13830 pycom05g07510 pycom08g08190 pycom15g07740
rosa_chinensis	RchiOBHm_Chr2g0105591 RchiOBHm_Chr6g0257401 RchiOBHm_Chr6g0307951
rosa_laevigata	RLG00000010684 RLG00000014690 RLG00000017443
rosa_multiflora	Rmu_sc0000820.1_g000025 Rmu_sc0003252.1_g000022
rosa_roxburghii	Rroxscaffold_2G00138090 Rroxscaffold_7G00160740 Rroxscaffold_7G00208630
rosa_rugosa	Rorug02G0128400 Rorug02G0128500 Rorug05G0573200 Rorug06G0362000
rosa_samantha	Rh2AG180300 Rh2CG184500 Rh2DG186100 Rh6AG090500 Rh6AG471000 Rh6BG482000 Rh6CG078300 Rh6CG487400 Rh6DG074100 Rh6DG473500
rosa_wichuraiana	Rw6G007900 Rw6G041130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	621
AciI	CCGC	1 cut(s)	1010
AclWI	GGATC	4 cut(s)	822, 1187, 1297, 1351
AcoI	YGGCCR	2 cut(s)	568, 1047
AcsI	RAATTY	2 cut(s)	819, 1186
AcuI	CTGAAG	1 cut(s)	911
AdeI	CACNNNGTG	1 cut(s)	1352
AfaI	GTAC	4 cut(s)	161, 747, 896, 1254
AfiI	CCNNNNNNNGG	2 cut(s)	140, 1388
AflII	CTTAAG	1 cut(s)	805
AgsI	TTSAA	6 cut(s)	220, 307, 458, 785, 923, 1361
AhlI	ACTAGT	2 cut(s)	1319, 1448
AjnI	CCWGG	4 cut(s)	115, 366, 655, 1264
AjuI	GAANNNNNNNTTGG	4 cut(s)	746, 778, 1421, 1453
Alw21I	GWGCWC	1 cut(s)	410
Alw26I	GTCTC	4 cut(s)	140, 204, 420, 706
AlwI	GGATC	4 cut(s)	822, 1187, 1297, 1351
AlwNI	CAGNNNCTG	3 cut(s)	442, 662, 709
AoxI	GGCC	6 cut(s)	131, 267, 343, 568, 1047, 1366
ApeKI	GCWGC	3 cut(s)	491, 494, 851
ApoI	RAATTY	2 cut(s)	819, 1186
AspS9I	GGNCC	3 cut(s)	169, 344, 1367
AsuHPI	GGTGA	3 cut(s)	290, 356, 779
AvaII	GGWCC	1 cut(s)	169
AxyI	CCTNAGG	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	994
BalI	TGGCCA	1 cut(s)	1049
BanII	GRGCYC	1 cut(s)	410
BauI	CACGAG	1 cut(s)	1313
Bbv12I	GWGCWC	1 cut(s)	410
BbvCI	CCTCAGC	1 cut(s)	1383
BbvI	GCAGC	3 cut(s)	478, 506, 863
BccI	CCATC	5 cut(s)	959, 1039, 1204, 1317, 1323
BciT130I	CCWGG	4 cut(s)	117, 368, 657, 1266
BcoDI	GTCTC	4 cut(s)	140, 204, 420, 706
BcuI	ACTAGT	2 cut(s)	1319, 1448
BfaI	CTAG	4 cut(s)	870, 1200, 1320, 1449
BfmI	CTRYAG	3 cut(s)	492, 749, 864
BfrI	CTTAAG	1 cut(s)	805
BglII	AGATCT	1 cut(s)	757
BisI	GCNGC	4 cut(s)	492, 495, 852, 1010
BlpI	GCTNAGC	2 cut(s)	105, 936
BlsI	GCNGC	4 cut(s)	493, 496, 853, 1011
BmcAI	AGTACT	1 cut(s)	747
Bme1390I	CCNGG	4 cut(s)	117, 368, 657, 1266
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	3 cut(s)	169, 344, 1367
BmiI	GGNNCC	2 cut(s)	171, 447
BmrFI	CCNGG	4 cut(s)	117, 368, 657, 1266
BmsI	GCATC	2 cut(s)	946, 1062
BplI	GAGNNNNNCTC	4 cut(s)	582, 614, 1157, 1189
BpmI	CTGGAG	1 cut(s)	1307
Bpu10I	CCTNAGC	1 cut(s)	1383
Bpu1102I	GCTNAGC	2 cut(s)	105, 936
BpuEI	CTTGAG	1 cut(s)	584
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	115, 367, 477
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 1388
Bse1I	ACTGG	3 cut(s)	447, 1290, 1376
Bse21I	CCTNAGG	1 cut(s)	264
BseBI	CCWGG	4 cut(s)	117, 368, 657, 1266
BseDI	CCNNGG	3 cut(s)	115, 367, 477
BseGI	GGATG	2 cut(s)	583, 1050
BseLI	CCNNNNNNNGG	2 cut(s)	140, 1388
BseMII	CTCAG	7 cut(s)	60, 255, 701, 717, 927, 1155, 1397
BseNI	ACTGG	3 cut(s)	447, 1290, 1376
BseRI	GAGGAG	1 cut(s)	1170
BseSI	GKGCMC	1 cut(s)	994
BseXI	GCAGC	3 cut(s)	478, 506, 863
BshFI	GGCC	6 cut(s)	133, 269, 345, 570, 1049, 1368
BsiHKAI	GWGCWC	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	498
BslI	CCNNNNNNNGG	2 cut(s)	140, 1388
BsmAI	GTCTC	4 cut(s)	140, 204, 420, 706
BsnI	GGCC	6 cut(s)	133, 269, 345, 570, 1049, 1368
Bso31I	GGTCTC	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	410, 994
Bsp143I	GATC	7 cut(s)	339, 757, 814, 977, 1192, 1302, 1343
Bsp1720I	GCTNAGC	2 cut(s)	105, 936
BspACI	CCGC	1 cut(s)	1010
BspANI	GGCC	6 cut(s)	133, 269, 345, 570, 1049, 1368
BspCNI	CTCAG	7 cut(s)	59, 256, 702, 718, 928, 1156, 1396
BspHI	TCATGA	1 cut(s)	520
BspLI	GGNNCC	2 cut(s)	171, 447
BspMAI	CTGCAG	2 cut(s)	496, 753
BspPI	GGATC	4 cut(s)	822, 1187, 1297, 1351
BspTI	CTTAAG	1 cut(s)	805
BspTNI	GGTCTC	1 cut(s)	140
BsrI	ACTGG	3 cut(s)	447, 1290, 1376
BssECI	CCNNGG	3 cut(s)	115, 367, 477
BssMI	GATC	7 cut(s)	339, 757, 814, 977, 1192, 1302, 1343
BssSI	CACGAG	1 cut(s)	1313
BssT1I	CCWWGG	1 cut(s)	477
Bst2BI	CACGAG	1 cut(s)	1313
Bst2UI	CCWGG	4 cut(s)	117, 368, 657, 1266
Bst4CI	ACNGT	2 cut(s)	383, 505
Bst6I	CTCTTC	1 cut(s)	194
BstAFI	CTTAAG	1 cut(s)	805
BstC8I	GCNNGC	3 cut(s)	259, 1051, 1278
BstENI	CCTNNNNNAGG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	583, 1050
BstKTI	GATC	7 cut(s)	342, 760, 817, 980, 1195, 1305, 1346
BstMAI	GTCTC	4 cut(s)	140, 204, 420, 706
BstMBI	GATC	7 cut(s)	339, 757, 814, 977, 1192, 1302, 1343
BstMWI	GCNNNNNNNGC	4 cut(s)	473, 683, 932, 1220
BstNI	CCWGG	4 cut(s)	117, 368, 657, 1266
BstNSI	RCATGY	2 cut(s)	655, 1259
BstSCI	CCNGG	4 cut(s)	115, 366, 655, 1264
BstSFI	CTRYAG	3 cut(s)	492, 749, 864
BstSLI	GKGCMC	1 cut(s)	994
BstV1I	GCAGC	3 cut(s)	478, 506, 863
BstX2I	RGATCY	1 cut(s)	757
BstXI	CCANNNNNNTGG	2 cut(s)	233, 1122
BstYI	RGATCY	1 cut(s)	757
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	6 cut(s)	133, 269, 345, 570, 1049, 1368
BtsCI	GGATG	2 cut(s)	583, 1050
BtsI	GCAGTG	2 cut(s)	64, 660
BtsIMutI	CAGTG	2 cut(s)	64, 660
Cac8I	GCNNGC	3 cut(s)	259, 1051, 1278
CaiI	CAGNNNCTG	3 cut(s)	442, 662, 709
CciI	TCATGA	1 cut(s)	520
Cfr13I	GGNCC	3 cut(s)	169, 344, 1367
Csp6I	GTAC	4 cut(s)	160, 746, 895, 1253
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviQI	GTAC	4 cut(s)	160, 746, 895, 1253
DpnI	GATC	7 cut(s)	341, 759, 816, 979, 1194, 1304, 1345
DpnII	GATC	7 cut(s)	339, 757, 814, 977, 1192, 1302, 1343
DraIII	CACNNNGTG	1 cut(s)	1352
EaeI	YGGCCR	2 cut(s)	568, 1047
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Ecl136II	GAGCTC	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	477
Eco24I	GRGCYC	1 cut(s)	410
Eco31I	GGTCTC	1 cut(s)	140
Eco32I	GATATC	1 cut(s)	1106
Eco47I	GGWCC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	911
Eco81I	CCTNAGG	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	408
EcoNI	CCTNNNNNAGG	1 cut(s)	138
EcoRII	CCWGG	4 cut(s)	115, 366, 655, 1264
EcoRV	GATATC	1 cut(s)	1106
EcoT14I	CCWWGG	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	477
FblI	GTMKAC	1 cut(s)	621
Fnu4HI	GCNGC	4 cut(s)	492, 495, 852, 1010
FokI	GGATG	2 cut(s)	590, 1057
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	4 cut(s)	492, 495, 852, 1010
FspBI	CTAG	4 cut(s)	870, 1200, 1320, 1449
GluI	GCNGC	4 cut(s)	492, 495, 852, 1010
GsuI	CTGGAG	1 cut(s)	1307
HaeIII	GGCC	6 cut(s)	133, 269, 345, 570, 1049, 1368
HapII	CCGG	1 cut(s)	498
HindIII	AAGCTT	2 cut(s)	107, 459
HinfI	GANTC	5 cut(s)	482, 706, 886, 1357, 1423
HpaII	CCGG	1 cut(s)	498
HphI	GGTGA	3 cut(s)	290, 356, 779
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	9 cut(s)	405, 705, 711, 727, 826, 891, 1001, 1328, 1410
Hpy188III	TCNNGA	6 cut(s)	449, 521, 920, 1163, 1315, 1441
Hpy8I	GTNNAC	1 cut(s)	622
HpyAV	CCTTC	5 cut(s)	357, 727, 925, 937, 1120
HpyCH4III	ACNGT	2 cut(s)	383, 505
HpyF10VI	GCNNNNNNNGC	4 cut(s)	473, 683, 932, 1220
Kzo9I	GATC	7 cut(s)	339, 757, 814, 977, 1192, 1302, 1343
LmnI	GCTCC	2 cut(s)	1183, 1219
Lsp1109I	GCAGC	3 cut(s)	478, 506, 863
LweI	GCATC	2 cut(s)	946, 1062
MaeI	CTAG	4 cut(s)	870, 1200, 1320, 1449
MaeIII	GTNAC	3 cut(s)	286, 629, 1315
MalI	GATC	7 cut(s)	341, 759, 816, 979, 1194, 1304, 1345
MboI	GATC	7 cut(s)	339, 757, 814, 977, 1192, 1302, 1343
MboII	GAAGA	3 cut(s)	211, 541, 1162
MfeI	CAATTG	1 cut(s)	634
MflI	RGATCY	1 cut(s)	757
MhlI	GDGCHC	2 cut(s)	410, 994
MlsI	TGGCCA	1 cut(s)	1049
MluCI	AATT	5 cut(s)	9, 634, 720, 819, 1186
MluNI	TGGCCA	1 cut(s)	1049
MmeI	TCCRAC	2 cut(s)	668, 1103
Mox20I	TGGCCA	1 cut(s)	1049
MscI	TGGCCA	1 cut(s)	1049
MseI	TTAA	3 cut(s)	806, 1092, 1453
MslI	CAYNNNNRTG	2 cut(s)	839, 985
Msp20I	TGGCCA	1 cut(s)	1049
MspCI	CTTAAG	1 cut(s)	805
MspI	CCGG	1 cut(s)	498
MspR9I	CCNGG	4 cut(s)	117, 368, 657, 1266
MunI	CAATTG	1 cut(s)	634
MvaI	CCWGG	4 cut(s)	117, 368, 657, 1266
MwoI	GCNNNNNNNGC	4 cut(s)	473, 683, 932, 1220
NdeII	GATC	7 cut(s)	339, 757, 814, 977, 1192, 1302, 1343
NlaIV	GGNNCC	2 cut(s)	171, 447
NmuCI	GTSAC	1 cut(s)	1315
NspI	RCATGY	2 cut(s)	655, 1259
PagI	TCATGA	1 cut(s)	520
PfeI	GAWTC	5 cut(s)	482, 706, 886, 1357, 1423
PfoI	TCCNGGA	1 cut(s)	1264
PkrI	GCNGC	4 cut(s)	493, 496, 853, 1011
Psp124BI	GAGCTC	1 cut(s)	410
Psp6I	CCWGG	4 cut(s)	115, 366, 655, 1264
PspGI	CCWGG	4 cut(s)	115, 366, 655, 1264
PspN4I	GGNNCC	2 cut(s)	171, 447
PspPI	GGNCC	3 cut(s)	169, 344, 1367
PstI	CTGCAG	2 cut(s)	496, 753
PstNI	CAGNNNCTG	3 cut(s)	442, 662, 709
PsuI	RGATCY	1 cut(s)	757
RsaI	GTAC	4 cut(s)	161, 747, 896, 1254
RsaNI	GTAC	4 cut(s)	160, 746, 895, 1253
RseI	CAYNNNNRTG	2 cut(s)	839, 985
SacI	GAGCTC	1 cut(s)	410
SaqAI	TTAA	3 cut(s)	806, 1092, 1453
SatI	GCNGC	4 cut(s)	492, 495, 852, 1010
Sau3AI	GATC	7 cut(s)	339, 757, 814, 977, 1192, 1302, 1343
Sau96I	GGNCC	3 cut(s)	169, 344, 1367
ScaI	AGTACT	1 cut(s)	747
ScrFI	CCNGG	4 cut(s)	117, 368, 657, 1266
SduI	GDGCHC	2 cut(s)	410, 994
SfaNI	GCATC	2 cut(s)	946, 1062
SfcI	CTRYAG	3 cut(s)	492, 749, 864
SinI	GGWCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	2 cut(s)	839, 985
SmlI	CTYRAG	2 cut(s)	599, 805
SmoI	CTYRAG	2 cut(s)	599, 805
SpeI	ACTAGT	2 cut(s)	1319, 1448
Sse9I	AATT	5 cut(s)	9, 634, 720, 819, 1186
SsiI	CCGC	1 cut(s)	1010
SspMI	CTAG	4 cut(s)	870, 1200, 1320, 1449
SstI	GAGCTC	1 cut(s)	410
StyD4I	CCNGG	4 cut(s)	115, 366, 655, 1264
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	2 cut(s)	383, 505
TasI	AATT	5 cut(s)	9, 634, 720, 819, 1186
TatI	WGTACW	3 cut(s)	159, 745, 1252
TauI	GCSGC	1 cut(s)	1012
TfiI	GAWTC	5 cut(s)	482, 706, 886, 1357, 1423
Tru1I	TTAA	3 cut(s)	806, 1092, 1453
Tru9I	TTAA	3 cut(s)	806, 1092, 1453
TscAI	CASTG	2 cut(s)	71, 667
TseFI	GTSAC	1 cut(s)	1315
TseI	GCWGC	3 cut(s)	491, 494, 851
Tsp45I	GTSAC	1 cut(s)	1315
TspDTI	ATGAA	5 cut(s)	537, 542, 804, 1222, 1285
TspRI	CASTG	2 cut(s)	71, 667
Vha464I	CTTAAG	1 cut(s)	805
VpaK11BI	GGWCC	1 cut(s)	169
XagI	CCTNNNNNAGG	1 cut(s)	138
XapI	RAATTY	2 cut(s)	819, 1186
XceI	RCATGY	2 cut(s)	655, 1259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	475
XmiI	GTMKAC	1 cut(s)	621
XspI	CTAG	4 cut(s)	870, 1200, 1320, 1449
ZrmI	AGTACT	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.