Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002224

Physical Location & Seq

Genomic Coordinates Reverse (-)

25614591 .. 25618802

Gene Structure 4212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1283400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGTGACTCAGGCACACTTGTTTAAACCTACATACCCCCAAAGCAAAGAGAGATTAATTGGTCCCTCGGCATTTTTCTTCCACCAAGATGACTACCATGGACAGATTAGAAGATTAGTCCAAGGATCATTGTCCTTGGATGTTATGAGAAACTTGGTCCCAGATATTGAAGCCATTGCCATTTCTACCTTAGACTCATGGTCTGGCAATGTCGTTAACACCTTTTATGAGTTAAAGAAGAACTTTAAAATGACATGTGTATATTTCTGTGTTGATATTGTACGCGTATTTGGTCACTTAAACAATCACTACAAAGAAATGCTCAAGGAAAAGTACTACACTCTAGACAAAGGTTACAATCCTTTCCCCGCAATACTCCCCGGCTCCTTGTGCAATAAATCGGTTTTGGTAAGCATAATAATTTGCCACGATCAACAATTATGTACTTATCGTAATCTGTTCGAGAAGGCAAGGAGAAGAATAAGCTTAATTCTTGGTGAGATAATAAAAGAGAGAAAGAAAAAGAGTTTGGTGCATAAAGATCTATTGGGCAGTTTATTGGACTTCAAGGATGAGAAGGGAGAAACCCTAACACACAATCAAATCGTCGACAACATCATTGGGGTAATGTTTGCTGCTCAGGACACCACAGCCAGTCTCCTAACTTGGATGATCAAATACATTCACGATGACTCAAAGCTTCAAGAAACTATCGAGATAGAACATAAGACAATCTTTGAATCAAATGGAGGAGGAAACCATTCGCTGAGTTGGTCACAGACTAGAAATATGCCCCTTACCAGCAGGGCTATGAAGGAGAGCTTGAGGATGGCAAGCATCATCTCTTTTACCTGTAGGGAAGCTGTCGAAGCTGTCGAAGATGTTGAATACAAAGTATACTTGATCCCAAAGGGATGGAAAGTACTGCCTTTGTTTCGGAACATTCATCATAATCCAGAATATTTTGCTGATCCGCACAAATTCGATCCATCAAGATTTGAGGCAATATATGGAAGGCTTGGAGTAAAGCCCAACACGTTCATGCCATTTGGAAATGGAATTCATACCTGTCCAGGAAATGAAGTTGCCAAGCTAGAAGTGCTTATTTTTATCCACCATCTTGTTAACAAGTTCAGGTGGGAAGTGGTAAGGTCCAGTAGGGGGGTTCATTACGCCCCAATTCCAATACCTCAGCAAGGACTTCCAGCCAAGTTTTGGAAAGATTCAATCCGGTTAAGGACCACAAGGCCAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010295 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

419

Amino Acids

48.2

Weight (kDa)

9.16

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	149 - 384	1.1e-49	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19270 AT3G19270
fragaria_vesca	FvH4_2g06010 FvH4_2g34420
malus_domestica	MD02G1171600.v1.1 MD05G1081400.v1.1 MD08G1101400.v1.1 MD15G1082600.v1.1 MD15G1283400.v1.1
prunus_persica	Prupe.1G435300_v2.0.a1 Prupe.7G133800_v2.0.a1 Prupe.8G125800_v2.0.a1
pyrus_communis	pycom02g13830 pycom05g07510 pycom08g08190 pycom15g07740
rosa_chinensis	RchiOBHm_Chr2g0105591 RchiOBHm_Chr6g0257401 RchiOBHm_Chr6g0307951
rosa_laevigata	RLG00000010684 RLG00000014690 RLG00000017443
rosa_multiflora	Rmu_sc0000820.1_g000025 Rmu_sc0003252.1_g000022
rosa_roxburghii	Rroxscaffold_2G00138090 Rroxscaffold_7G00160740 Rroxscaffold_7G00208630
rosa_rugosa	Rorug02G0128400 Rorug02G0128500 Rorug05G0573200 Rorug06G0362000
rosa_samantha	Rh2AG180300 Rh2CG184500 Rh2DG186100 Rh6AG090500 Rh6AG471000 Rh6BG482000 Rh6CG078300 Rh6CG487400 Rh6DG074100 Rh6DG473500
rosa_wichuraiana	Rw6G007900 Rw6G041130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1215
AccI	GTMKAC	2 cut(s)	609, 897
AccII	CGCG	1 cut(s)	285
AciI	CCGC	2 cut(s)	369, 974
AclWI	GGATC	4 cut(s)	133, 898, 965, 980
AcsI	RAATTY	2 cut(s)	980, 1059
AfaI	GTAC	4 cut(s)	282, 335, 445, 924
AfiI	CCNNNNNNNGG	3 cut(s)	1161, 1196, 1215
AflIII	ACRYGT	3 cut(s)	254, 283, 1035
AgsI	TTSAA	6 cut(s)	170, 568, 704, 740, 887, 1227
AhdI	GACNNNNNGTC	1 cut(s)	199
AjnI	CCWGG	2 cut(s)	1072, 1249
AjuI	GAANNNNNNNTTGG	2 cut(s)	512, 544
AluBI	AGCT	6 cut(s)	486, 700, 822, 863, 872, 1093
AluI	AGCT	6 cut(s)	486, 700, 822, 863, 872, 1093
Alw26I	GTCTC	1 cut(s)	662
AlwI	GGATC	4 cut(s)	133, 898, 965, 980
AoxI	GGCC	1 cut(s)	1247
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	2 cut(s)	980, 1059
AseI	ATTAAT	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	760
AspS9I	GGNCC	4 cut(s)	62, 157, 1152, 1239
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	2 cut(s)	16, 509
AvaII	GGWCC	4 cut(s)	62, 157, 1152, 1239
BbvCI	CCTCAGC	1 cut(s)	1191
BbvI	GCAGC	1 cut(s)	622
BccI	CCATC	4 cut(s)	823, 909, 997, 1125
BciT130I	CCWGG	2 cut(s)	1074, 1251
BclI	TGATCA	1 cut(s)	672
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	1 cut(s)	662
BfaI	CTAG	4 cut(s)	344, 783, 1094, 1255
BfmI	CTRYAG	1 cut(s)	853
BglII	AGATCT	1 cut(s)	541
BisI	GCNGC	1 cut(s)	636
BlsI	GCNGC	1 cut(s)	637
BmcAI	AGTACT	2 cut(s)	335, 924
Bme1390I	CCNGG	3 cut(s)	381, 1074, 1251
Bme18I	GGWCC	4 cut(s)	62, 157, 1152, 1239
BmeRI	GACNNNNNGTC	1 cut(s)	199
BmgT120I	GGNCC	4 cut(s)	62, 157, 1152, 1239
BmiI	GGNNCC	3 cut(s)	64, 159, 385
BmrFI	CCNGG	3 cut(s)	381, 1074, 1251
BmsI	GCATC	1 cut(s)	846
Bpu10I	CCTNAGC	2 cut(s)	639, 1191
BpuEI	CTTGAG	2 cut(s)	308, 844
BpuMI	CCSGG	1 cut(s)	381
BsaJI	CCNNGG	5 cut(s)	66, 97, 121, 135, 379
BsaWI	WCCGGW	1 cut(s)	1230
Bsc4I	CCNNNNNNNGG	3 cut(s)	1161, 1196, 1215
Bse1I	ACTGG	2 cut(s)	654, 1155
Bse3DI	GCAATG	2 cut(s)	174, 214
BseBI	CCWGG	2 cut(s)	1074, 1251
BseDI	CCNNGG	5 cut(s)	66, 97, 121, 135, 379
BseGI	GGATG	5 cut(s)	145, 577, 675, 834, 920
BseLI	CCNNNNNNNGG	3 cut(s)	1161, 1196, 1215
BseMI	GCAATG	2 cut(s)	174, 214
BseMII	CTCAG	4 cut(s)	23, 653, 758, 1205
BseNI	ACTGG	2 cut(s)	654, 1155
BseRI	GAGGAG	1 cut(s)	765
BseXI	GCAGC	1 cut(s)	622
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	1249
BsiSI	CCGG	2 cut(s)	381, 1231
BslFI	GGGAC	2 cut(s)	48, 143
BslI	CCNNNNNNNGG	3 cut(s)	1161, 1196, 1215
BsmAI	GTCTC	1 cut(s)	662
BsmFI	GGGAC	2 cut(s)	48, 143
BsnI	GGCC	1 cut(s)	1249
Bsp143I	GATC	7 cut(s)	125, 430, 541, 672, 903, 970, 985
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	2 cut(s)	369, 974
BspANI	GGCC	1 cut(s)	1249
BspCNI	CTCAG	4 cut(s)	22, 652, 759, 1204
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	3 cut(s)	64, 159, 385
BspPI	GGATC	4 cut(s)	133, 898, 965, 980
BsrDI	GCAATG	2 cut(s)	174, 214
BsrI	ACTGG	2 cut(s)	654, 1155
BssECI	CCNNGG	5 cut(s)	66, 97, 121, 135, 379
BssMI	GATC	7 cut(s)	125, 430, 541, 672, 903, 970, 985
BssNAI	GTATAC	1 cut(s)	898
BssT1I	CCWWGG	3 cut(s)	97, 121, 135
Bst1107I	GTATAC	1 cut(s)	898
Bst2UI	CCWGG	2 cut(s)	1074, 1251
BstC8I	GCNNGC	1 cut(s)	835
BstDEI	CTNAG	5 cut(s)	9, 190, 639, 767, 1191
BstDSI	CCRYGG	1 cut(s)	97
BstENI	CCTNNNNNAGG	1 cut(s)	1194
BstF5I	GGATG	5 cut(s)	145, 577, 675, 834, 920
BstFNI	CGCG	1 cut(s)	285
BstKTI	GATC	7 cut(s)	128, 433, 544, 675, 906, 973, 988
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	7 cut(s)	125, 430, 541, 672, 903, 970, 985
BstMWI	GCNNNNNNNGC	3 cut(s)	390, 869, 1099
BstNI	CCWGG	2 cut(s)	1074, 1251
BstNSI	RCATGY	1 cut(s)	258
BstSCI	CCNGG	3 cut(s)	379, 1072, 1249
BstSFI	CTRYAG	1 cut(s)	853
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	622
BstX2I	RGATCY	1 cut(s)	541
BstXI	CCANNNNNNTGG	1 cut(s)	915
BstYI	RGATCY	1 cut(s)	541
BstZ17I	GTATAC	1 cut(s)	898
BsuRI	GGCC	1 cut(s)	1249
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	5 cut(s)	145, 577, 675, 834, 920
Cac8I	GCNNGC	1 cut(s)	835
Cfr13I	GGNCC	4 cut(s)	62, 157, 1152, 1239
Csp6I	GTAC	4 cut(s)	281, 334, 444, 923
CviAII	CATG	4 cut(s)	98, 198, 255, 1042
CviQI	GTAC	4 cut(s)	281, 334, 444, 923
DdeI	CTNAG	5 cut(s)	9, 190, 639, 767, 1191
DpnI	GATC	7 cut(s)	127, 432, 543, 674, 905, 972, 987
DpnII	GATC	7 cut(s)	125, 430, 541, 672, 903, 970, 985
DraI	TTTAAA	2 cut(s)	25, 247
DriI	GACNNNNNGTC	1 cut(s)	199
Eam1105I	GACNNNNNGTC	1 cut(s)	199
Eco130I	CCWWGG	3 cut(s)	97, 121, 135
Eco47I	GGWCC	4 cut(s)	62, 157, 1152, 1239
EcoNI	CCTNNNNNAGG	1 cut(s)	1194
EcoRI	GAATTC	1 cut(s)	1059
EcoRII	CCWGG	2 cut(s)	1072, 1249
EcoT14I	CCWWGG	3 cut(s)	97, 121, 135
ErhI	CCWWGG	3 cut(s)	97, 121, 135
FaeI	CATG	4 cut(s)	101, 201, 258, 1045
FalI	AAGNNNNNCTT	6 cut(s)	227, 259, 719, 751, 806, 838
FaqI	GGGAC	2 cut(s)	48, 143
FatI	CATG	4 cut(s)	97, 197, 254, 1041
FauI	CCCGC	1 cut(s)	376
FbaI	TGATCA	1 cut(s)	672
FblI	GTMKAC	2 cut(s)	609, 897
Fnu4HI	GCNGC	1 cut(s)	636
FokI	GGATG	5 cut(s)	152, 584, 682, 841, 927
Fsp4HI	GCNGC	1 cut(s)	636
FspBI	CTAG	4 cut(s)	344, 783, 1094, 1255
GluI	GCNGC	1 cut(s)	636
HaeIII	GGCC	1 cut(s)	1249
HapII	CCGG	2 cut(s)	381, 1231
Hin1II	CATG	4 cut(s)	101, 201, 258, 1045
HincII	GTYRAC	3 cut(s)	217, 610, 1126
HindII	GTYRAC	3 cut(s)	217, 610, 1126
HindIII	AAGCTT	2 cut(s)	484, 698
HinfI	GANTC	5 cut(s)	7, 194, 692, 740, 1223
HpaI	GTTAAC	2 cut(s)	217, 1126
HpaII	CCGG	2 cut(s)	381, 1231
HphI	GGTGA	2 cut(s)	16, 509
Hpy166II	GTNNAC	4 cut(s)	217, 610, 898, 1126
Hpy188I	TCNGA	1 cut(s)	939
Hpy188III	TCNNGA	8 cut(s)	344, 463, 641, 686, 704, 715, 956, 993
Hpy8I	GTNNAC	4 cut(s)	217, 610, 898, 1126
Hpy99I	CGWCG	1 cut(s)	611
HpyAV	CCTTC	4 cut(s)	460, 571, 808, 1008
HpyCH4IV	ACGT	1 cut(s)	1037
HpyCH4V	TGCA	2 cut(s)	393, 535
HpyF10VI	GCNNNNNNNGC	3 cut(s)	390, 869, 1099
HpyF3I	CTNAG	5 cut(s)	9, 190, 639, 767, 1191
HpySE526I	ACGT	1 cut(s)	1037
Hsp92II	CATG	4 cut(s)	101, 201, 258, 1045
Ksp22I	TGATCA	1 cut(s)	672
KspAI	GTTAAC	2 cut(s)	217, 1126
Kzo9I	GATC	7 cut(s)	125, 430, 541, 672, 903, 970, 985
LmnI	GCTCC	1 cut(s)	389
Lsp1109I	GCAGC	1 cut(s)	622
LweI	GCATC	1 cut(s)	846
MaeI	CTAG	4 cut(s)	344, 783, 1094, 1255
MaeII	ACGT	1 cut(s)	1037
MaeIII	GTNAC	4 cut(s)	4, 293, 353, 774
MalI	GATC	7 cut(s)	127, 432, 543, 674, 905, 972, 987
MboI	GATC	7 cut(s)	125, 430, 541, 672, 903, 970, 985
MboII	GAAGA	5 cut(s)	70, 123, 250, 489, 890
MflI	RGATCY	1 cut(s)	541
MluCI	AATT	7 cut(s)	57, 420, 437, 489, 980, 1059, 1179
MluI	ACGCGT	1 cut(s)	283
MlyI	GAGTC	2 cut(s)	188, 686
MnlI	CCTC	6 cut(s)	76, 743, 746, 819, 994, 1200
MroXI	GAANNNNTTC	1 cut(s)	760
MseI	TTAA	9 cut(s)	24, 56, 216, 233, 246, 299, 488, 1125, 1235
MslI	CAYNNNNRTG	2 cut(s)	87, 1040
MspI	CCGG	2 cut(s)	381, 1231
MspR9I	CCNGG	3 cut(s)	381, 1074, 1251
MssI	GTTTAAAC	1 cut(s)	25
MvaI	CCWGG	2 cut(s)	1074, 1251
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	3 cut(s)	390, 869, 1099
NciI	CCSGG	1 cut(s)	381
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	7 cut(s)	125, 430, 541, 672, 903, 970, 985
NlaIII	CATG	4 cut(s)	101, 201, 258, 1045
NlaIV	GGNNCC	3 cut(s)	64, 159, 385
NmeAIII	GCCGAG	1 cut(s)	47
NmuCI	GTSAC	3 cut(s)	4, 293, 774
NspI	RCATGY	1 cut(s)	258
PciI	ACATGT	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	873
PdmI	GAANNNNTTC	1 cut(s)	760
PfeI	GAWTC	2 cut(s)	740, 1223
PflMI	CCANNNNNTGG	1 cut(s)	1215
PfoI	TCCNGGA	1 cut(s)	1072
PkrI	GCNGC	1 cut(s)	637
PleI	GAGTC	2 cut(s)	188, 686
PmeI	GTTTAAAC	1 cut(s)	25
PpsI	GAGTC	2 cut(s)	188, 686
PscI	ACATGT	1 cut(s)	254
PshBI	ATTAAT	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	1072, 1249
PspGI	CCWGG	2 cut(s)	1072, 1249
PspN4I	GGNNCC	3 cut(s)	64, 159, 385
PspPI	GGNCC	4 cut(s)	62, 157, 1152, 1239
PsuI	RGATCY	1 cut(s)	541
RsaI	GTAC	4 cut(s)	282, 335, 445, 924
RsaNI	GTAC	4 cut(s)	281, 334, 444, 923
RseI	CAYNNNNRTG	2 cut(s)	87, 1040
SalI	GTCGAC	1 cut(s)	608
SaqAI	TTAA	9 cut(s)	24, 56, 216, 233, 246, 299, 488, 1125, 1235
SatI	GCNGC	1 cut(s)	636
Sau3AI	GATC	7 cut(s)	125, 430, 541, 672, 903, 970, 985
Sau96I	GGNCC	4 cut(s)	62, 157, 1152, 1239
ScaI	AGTACT	2 cut(s)	335, 924
SchI	GAGTC	2 cut(s)	188, 686
ScrFI	CCNGG	3 cut(s)	381, 1074, 1251
SfaNI	GCATC	1 cut(s)	846
SfcI	CTRYAG	1 cut(s)	853
SinI	GGWCC	4 cut(s)	62, 157, 1152, 1239
SmiMI	CAYNNNNRTG	2 cut(s)	87, 1040
SmlI	CTYRAG	2 cut(s)	323, 823
SmoI	CTYRAG	2 cut(s)	323, 823
Sse9I	AATT	7 cut(s)	57, 420, 437, 489, 980, 1059, 1179
SsiI	CCGC	2 cut(s)	369, 974
SspI	AATATT	1 cut(s)	962
SspMI	CTAG	4 cut(s)	344, 783, 1094, 1255
StyD4I	CCNGG	3 cut(s)	379, 1072, 1249
StyI	CCWWGG	3 cut(s)	97, 121, 135
TaiI	ACGT	1 cut(s)	1040
TaqI	TCGA	6 cut(s)	462, 609, 714, 867, 876, 984
TasI	AATT	7 cut(s)	57, 420, 437, 489, 980, 1059, 1179
TatI	WGTACW	3 cut(s)	333, 443, 922
TfiI	GAWTC	2 cut(s)	740, 1223
Tru1I	TTAA	9 cut(s)	24, 56, 216, 233, 246, 299, 488, 1125, 1235
Tru9I	TTAA	9 cut(s)	24, 56, 216, 233, 246, 299, 488, 1125, 1235
TseFI	GTSAC	3 cut(s)	4, 293, 774
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	3 cut(s)	4, 293, 774
TspDTI	ATGAA	6 cut(s)	827, 935, 1030, 1052, 1095, 1157
Van91I	CCANNNNNTGG	1 cut(s)	1215
VpaK11BI	GGWCC	4 cut(s)	62, 157, 1152, 1239
VspI	ATTAAT	1 cut(s)	56
XagI	CCTNNNNNAGG	1 cut(s)	1194
XapI	RAATTY	2 cut(s)	980, 1059
XbaI	TCTAGA	1 cut(s)	343
XceI	RCATGY	1 cut(s)	258
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1212
XmiI	GTMKAC	2 cut(s)	609, 897
XmnI	GAANNNNTTC	1 cut(s)	760
XspI	CTAG	4 cut(s)	344, 783, 1094, 1255
ZrmI	AGTACT	2 cut(s)	335, 924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.