Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002224

Physical Location & Seq

Genomic Coordinates Reverse (-)

65375105 .. 65378601

Gene Structure 3497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG471000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGTCGCAATTTTCACATACGCTTTCGTTTCTCTCTTAACCATAATCTTCTCGTACATTTTCATGAAGAAGAACAAGGGAGGAGAAGAAGAGCTCCATGCTCATGGTAATGAAAATAGAGCTCAGCTCCCTCCAGGCTCACTGGGTTGGCCTTATATCGGAGAGACTCTCCAGCTCTATTCTCAGGACCCAAACATTTTCTTCTCTGCCAGACAGAGAAGGTATGGGAAAATTTTCAAGACCCATATACTTGGGTGTCCATGTGTGATGCTGGCCAGCCCGGAGGCTGCAAAGTTTGTGTTGGTCACTCAAGCTCACTTGTTCAAGCCCACCTATCCCAAAAGCAAAGAGGGTCTGATTGGTCCCTCCGCACTATTTTTCCACCAAGGAGATTACCATAACAGACTGAGGAAGCTTGTTCAGGGATCTCTCAACCTTGATGCTATTCGGAATTTGGTGCCCCATATCGATGCCACGGCTGCCTTTATGACCTCGGAGTCATGGGGCACCGGGAAGGTCATTAACACCTTCCATGAGATGCAGAAGTTTTCTTTCGAAGTTGGAACACTAGCAATTTTTGGCCATTTGGAGACCCGCTACAAAGAAGAACTCAAAAAGAACTATATGGTAGTGGACAAGGGCTACAATTCATTCCCCATAAATATTCCTGGATCACCATATAAAAAGGCTTTGTTGGCGAGGGAGAGGCTGAGACATATTTTGGGTGACATTATCCACGAGAGAAAGGAGAAGAGATTACCTGAAAAGGATCTCTTGGGTTGTTTGCTGAGCTCAATAAACGGAGGGGAAGTTTTGAGTGATGACCAAATCGCAGACAACATAATAGGTGTGCTCTTTGCTGCTCAAGACACCACAGCCAGTGTCATGACCTGGATTATCAAGTACCTCCACGACGAGCCCAAACTTCTAGAAGCTGTCAAGGCCGAACAAAATGCAATTCGCATATCAAATGAACAAGGCAATCAACCATTGAGTTGGGCACAGACTAAAATCATGCCAATTAGTTATAAGGTACATACTTACACATGCACTTTCGACCATATACATTTACCTATACGAAGGCTTTTTCTGCAGTGTGTGTTGACTTGTTGTTATTATTATTCTCAGGTTGTGTTGGAGAGTTTGCGAATGGCAAGCATTATATCATTCCTCTTTAGGGAGGCTGTGGTTGATGTGAAATACAAAGGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010295 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

404

Amino Acids

45.96

Weight (kDa)

8.95

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	44 - 340	7.5e-29	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19270 AT3G19270
fragaria_vesca	FvH4_2g06010 FvH4_2g34420
malus_domestica	MD02G1171600.v1.1 MD05G1081400.v1.1 MD08G1101400.v1.1 MD15G1082600.v1.1 MD15G1283400.v1.1
prunus_persica	Prupe.1G435300_v2.0.a1 Prupe.7G133800_v2.0.a1 Prupe.8G125800_v2.0.a1
pyrus_communis	pycom02g13830 pycom05g07510 pycom08g08190 pycom15g07740
rosa_chinensis	RchiOBHm_Chr2g0105591 RchiOBHm_Chr6g0257401 RchiOBHm_Chr6g0307951
rosa_laevigata	RLG00000010684 RLG00000014690 RLG00000017443
rosa_multiflora	Rmu_sc0000820.1_g000025 Rmu_sc0003252.1_g000022
rosa_roxburghii	Rroxscaffold_2G00138090 Rroxscaffold_7G00160740 Rroxscaffold_7G00208630
rosa_rugosa	Rorug02G0128400 Rorug02G0128500 Rorug05G0573200 Rorug06G0362000
rosa_samantha	Rh2AG180300 Rh2CG184500 Rh2DG186100 Rh6AG090500 Rh6AG471000 Rh6BG482000 Rh6CG078300 Rh6CG487400 Rh6DG074100 Rh6DG473500
rosa_wichuraiana	Rw6G007900 Rw6G041130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1029
AasI	GACNNNNNNGTC	1 cut(s)	496
AccB1I	GGYRCC	2 cut(s)	457, 506
AciI	CCGC	2 cut(s)	369, 595
AclWI	GGATC	3 cut(s)	433, 679, 777
AcoI	YGGCCR	2 cut(s)	273, 580
AcsI	RAATTY	2 cut(s)	231, 451
AfaI	GTAC	3 cut(s)	56, 905, 1035
AfiI	CCNNNNNNNGG	2 cut(s)	158, 1177
AgsI	TTSAA	2 cut(s)	238, 325
AjnI	CCWGG	3 cut(s)	133, 667, 890
AluBI	AGCT	8 cut(s)	94, 122, 127, 175, 314, 415, 792, 935
AluI	AGCT	8 cut(s)	94, 122, 127, 175, 314, 415, 792, 935
Alw21I	GWGCWC	4 cut(s)	96, 124, 794, 855
Alw26I	GTCTC	3 cut(s)	158, 584, 706
AlwI	GGATC	3 cut(s)	433, 679, 777
AoxI	GGCC	4 cut(s)	149, 273, 580, 942
ApeKI	GCWGC	3 cut(s)	287, 479, 860
ApoI	RAATTY	2 cut(s)	231, 451
Asp700I	GAANNNNTTC	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	187, 362
AsuC2I	CCSGG	2 cut(s)	281, 511
AsuHPI	GGTGA	2 cut(s)	666, 737
AsuII	TTCGAA	1 cut(s)	555
AvaII	GGWCC	2 cut(s)	187, 362
BaeGI	GKGCMC	3 cut(s)	462, 509, 1003
BalI	TGGCCA	2 cut(s)	275, 582
BanI	GGYRCC	2 cut(s)	457, 506
BanII	GRGCYC	4 cut(s)	96, 124, 794, 921
BauI	CACGAG	1 cut(s)	737
Bbv12I	GWGCWC	4 cut(s)	96, 124, 794, 855
BbvI	GCAGC	3 cut(s)	274, 466, 847
BceAI	ACGGC	1 cut(s)	492
BcgI	CGANNNNNNTGC	2 cut(s)	935, 969
BciT130I	CCWGG	3 cut(s)	135, 669, 892
BcnI	CCSGG	2 cut(s)	281, 511
BcoDI	GTCTC	3 cut(s)	158, 584, 706
BfaI	CTAG	2 cut(s)	569, 929
BfmI	CTRYAG	1 cut(s)	1091
BisI	GCNGC	3 cut(s)	288, 480, 861
BlpI	GCTNAGC	2 cut(s)	123, 788
BlsI	GCNGC	3 cut(s)	289, 481, 862
Bme1390I	CCNGG	5 cut(s)	135, 281, 511, 669, 892
Bme18I	GGWCC	2 cut(s)	187, 362
BmgT120I	GGNCC	2 cut(s)	187, 362
BmiI	GGNNCC	4 cut(s)	189, 364, 459, 508
BmrFI	CCNGG	5 cut(s)	135, 281, 511, 669, 892
BmrI	ACTGGG	1 cut(s)	152
BmsI	GCATC	4 cut(s)	258, 430, 460, 528
BmuI	ACTGGG	1 cut(s)	152
BplI	GAGNNNNNCTC	4 cut(s)	111, 143, 153, 185
BpmI	CTGGAG	2 cut(s)	117, 155
Bpu1102I	GCTNAGC	2 cut(s)	123, 788
Bpu14I	TTCGAA	1 cut(s)	555
BpuEI	CTTGAG	2 cut(s)	294, 849
BpuMI	CCSGG	2 cut(s)	281, 511
Bsa29I	ATCGAT	1 cut(s)	468
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	3 cut(s)	385, 474, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	795, 825
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 1177
Bse1I	ACTGG	2 cut(s)	147, 879
BseBI	CCWGG	3 cut(s)	135, 669, 892
BseCI	ATCGAT	1 cut(s)	468
BseDI	CCNNGG	3 cut(s)	385, 474, 492
BseLI	CCNNNNNNNGG	2 cut(s)	158, 1177
BseMII	CTCAG	6 cut(s)	137, 197, 398, 701, 779, 1139
BseNI	ACTGG	2 cut(s)	147, 879
BseRI	GAGGAG	1 cut(s)	96
BseSI	GKGCMC	3 cut(s)	462, 509, 1003
BseXI	GCAGC	3 cut(s)	274, 466, 847
BshFI	GGCC	4 cut(s)	151, 275, 582, 944
BshNI	GGYRCC	2 cut(s)	457, 506
BshVI	ATCGAT	1 cut(s)	468
BsiHKAI	GWGCWC	4 cut(s)	96, 124, 794, 855
BsiSI	CCGG	2 cut(s)	281, 510
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	158, 1177
BsmAI	GTCTC	3 cut(s)	158, 584, 706
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	4 cut(s)	151, 275, 582, 944
Bso31I	GGTCTC	1 cut(s)	584
Bsp119I	TTCGAA	1 cut(s)	555
Bsp1286I	GDGCHC	8 cut(s)	96, 124, 462, 509, 794, 855, 921, 1003
Bsp143I	GATC	3 cut(s)	425, 671, 769
Bsp1720I	GCTNAGC	2 cut(s)	123, 788
BspACI	CCGC	2 cut(s)	369, 595
BspANI	GGCC	4 cut(s)	151, 275, 582, 944
BspCNI	CTCAG	6 cut(s)	136, 196, 399, 702, 780, 1138
BspDI	ATCGAT	1 cut(s)	468
BspHI	TCATGA	2 cut(s)	63, 885
BspLI	GGNNCC	4 cut(s)	189, 364, 459, 508
BspMAI	CTGCAG	1 cut(s)	1095
BspPI	GGATC	3 cut(s)	433, 679, 777
BspQI	GCTCTTC	1 cut(s)	84
BspT104I	TTCGAA	1 cut(s)	555
BspT107I	GGYRCC	2 cut(s)	457, 506
BspTNI	GGTCTC	1 cut(s)	584
BsrI	ACTGG	2 cut(s)	147, 879
BssECI	CCNNGG	3 cut(s)	385, 474, 492
BssMI	GATC	3 cut(s)	425, 671, 769
BssSI	CACGAG	1 cut(s)	737
BssT1I	CCWWGG	1 cut(s)	385
Bst2BI	CACGAG	1 cut(s)	737
Bst2UI	CCWGG	3 cut(s)	135, 669, 892
Bst6I	CTCTTC	2 cut(s)	84, 746
BstBI	TTCGAA	1 cut(s)	555
BstC8I	GCNNGC	3 cut(s)	273, 277, 1156
BstDEI	CTNAG	6 cut(s)	123, 183, 407, 710, 788, 1125
BstDSI	CCRYGG	1 cut(s)	474
BstKTI	GATC	3 cut(s)	428, 674, 772
BstMAI	GTCTC	3 cut(s)	158, 584, 706
BstMBI	GATC	3 cut(s)	425, 671, 769
BstMWI	GCNNNNNNNGC	4 cut(s)	479, 695, 941, 1090
BstNI	CCWGG	3 cut(s)	135, 669, 892
BstNSI	RCATGY	1 cut(s)	1050
BstSCI	CCNGG	5 cut(s)	133, 279, 509, 667, 890
BstSFI	CTRYAG	1 cut(s)	1091
BstSLI	GKGCMC	3 cut(s)	462, 509, 1003
BstV1I	GCAGC	3 cut(s)	274, 466, 847
BstX2I	RGATCY	2 cut(s)	425, 769
BstXI	CCANNNNNNTGG	3 cut(s)	104, 251, 996
BstYI	RGATCY	2 cut(s)	425, 769
Bsu15I	ATCGAT	1 cut(s)	468
BsuRI	GGCC	4 cut(s)	151, 275, 582, 944
BsuTUI	ATCGAT	1 cut(s)	468
BtgI	CCRYGG	1 cut(s)	474
BtsI	GCAGTG	1 cut(s)	1100
BtsIMutI	CAGTG	3 cut(s)	140, 886, 1100
Cac8I	GCNNGC	3 cut(s)	273, 277, 1156
CciI	TCATGA	2 cut(s)	63, 885
Cfr13I	GGNCC	2 cut(s)	187, 362
ClaI	ATCGAT	1 cut(s)	468
Csp6I	GTAC	3 cut(s)	55, 904, 1034
CviAII	CATG	9 cut(s)	64, 98, 104, 261, 501, 533, 886, 1015, 1047
CviQI	GTAC	3 cut(s)	55, 904, 1034
DdeI	CTNAG	6 cut(s)	123, 183, 407, 710, 788, 1125
DpnI	GATC	3 cut(s)	427, 673, 771
DpnII	GATC	3 cut(s)	425, 671, 769
DrdI	GACNNNNNNGTC	1 cut(s)	496
DseDI	GACNNNNNNGTC	1 cut(s)	496
EaeI	YGGCCR	2 cut(s)	273, 580
Eam1104I	CTCTTC	2 cut(s)	84, 746
EarI	CTCTTC	2 cut(s)	84, 746
Ecl136II	GAGCTC	3 cut(s)	94, 122, 792
Eco130I	CCWWGG	1 cut(s)	385
Eco24I	GRGCYC	4 cut(s)	96, 124, 794, 921
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	2 cut(s)	187, 362
Eco53kI	GAGCTC	3 cut(s)	94, 122, 792
EcoICRI	GAGCTC	3 cut(s)	94, 122, 792
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRII	CCWGG	3 cut(s)	133, 667, 890
EcoT14I	CCWWGG	1 cut(s)	385
EcoT38I	GRGCYC	4 cut(s)	96, 124, 794, 921
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	9 cut(s)	67, 101, 107, 264, 504, 536, 889, 1018, 1050
FalI	AAGNNNNNCTT	2 cut(s)	758, 790
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	9 cut(s)	63, 97, 103, 260, 500, 532, 885, 1014, 1046
FauI	CCCGC	1 cut(s)	602
Fnu4HI	GCNGC	3 cut(s)	288, 480, 861
FriOI	GRGCYC	4 cut(s)	96, 124, 794, 921
Fsp4HI	GCNGC	3 cut(s)	288, 480, 861
FspBI	CTAG	2 cut(s)	569, 929
GluI	GCNGC	3 cut(s)	288, 480, 861
GsuI	CTGGAG	2 cut(s)	117, 155
HaeIII	GGCC	4 cut(s)	151, 275, 582, 944
HapII	CCGG	2 cut(s)	281, 510
Hin1II	CATG	9 cut(s)	67, 101, 107, 264, 504, 536, 889, 1018, 1050
HincII	GTYRAC	1 cut(s)	1104
HindII	GTYRAC	1 cut(s)	1104
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	2 cut(s)	166, 497
HpaII	CCGG	2 cut(s)	281, 510
HphI	GGTGA	2 cut(s)	666, 737
Hpy166II	GTNNAC	2 cut(s)	634, 1104
Hpy188I	TCNGA	4 cut(s)	161, 357, 450, 496
Hpy188III	TCNNGA	6 cut(s)	64, 185, 238, 866, 886, 929
Hpy8I	GTNNAC	2 cut(s)	634, 1104
Hpy99I	CGWCG	1 cut(s)	917
HpyAV	CCTTC	4 cut(s)	213, 508, 538, 1074
HpyCH4V	TGCA	5 cut(s)	290, 541, 956, 1050, 1093
HpyF10VI	GCNNNNNNNGC	4 cut(s)	479, 695, 941, 1090
HpyF3I	CTNAG	6 cut(s)	123, 183, 407, 710, 788, 1125
Hsp92II	CATG	9 cut(s)	67, 101, 107, 264, 504, 536, 889, 1018, 1050
Kzo9I	GATC	3 cut(s)	425, 671, 769
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	2 cut(s)	99, 132
Lsp1109I	GCAGC	3 cut(s)	274, 466, 847
LweI	GCATC	4 cut(s)	258, 430, 460, 528
MaeI	CTAG	2 cut(s)	569, 929
MaeIII	GTNAC	2 cut(s)	304, 725
MalI	GATC	3 cut(s)	427, 673, 771
MboI	GATC	3 cut(s)	425, 671, 769
MboII	GAAGA	8 cut(s)	40, 79, 82, 98, 101, 193, 617, 763
MflI	RGATCY	2 cut(s)	425, 769
MhlI	GDGCHC	8 cut(s)	96, 124, 462, 509, 794, 855, 921, 1003
MlsI	TGGCCA	2 cut(s)	275, 582
MluCI	AATT	8 cut(s)	9, 231, 451, 573, 646, 957, 1020, 1210
MluNI	TGGCCA	2 cut(s)	275, 582
MlyI	GAGTC	2 cut(s)	160, 506
MmeI	TCCRAC	2 cut(s)	541, 1116
Mox20I	TGGCCA	2 cut(s)	275, 582
MroXI	GAANNNNTTC	1 cut(s)	233
MscI	TGGCCA	2 cut(s)	275, 582
MseI	TTAA	2 cut(s)	38, 522
MslI	CAYNNNNRTG	4 cut(s)	62, 102, 108, 468
Msp20I	TGGCCA	2 cut(s)	275, 582
MspI	CCGG	2 cut(s)	281, 510
MspR9I	CCNGG	5 cut(s)	135, 281, 511, 669, 892
MvaI	CCWGG	3 cut(s)	135, 669, 892
MwoI	GCNNNNNNNGC	4 cut(s)	479, 695, 941, 1090
NciI	CCSGG	2 cut(s)	281, 511
NdeII	GATC	3 cut(s)	425, 671, 769
NlaIII	CATG	9 cut(s)	67, 101, 107, 264, 504, 536, 889, 1018, 1050
NlaIV	GGNNCC	4 cut(s)	189, 364, 459, 508
NmuCI	GTSAC	2 cut(s)	304, 725
NspI	RCATGY	1 cut(s)	1050
NspV	TTCGAA	1 cut(s)	555
PagI	TCATGA	2 cut(s)	63, 885
PciSI	GCTCTTC	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	233
PfoI	TCCNGGA	1 cut(s)	667
PkrI	GCNGC	3 cut(s)	289, 481, 862
PleI	GAGTC	2 cut(s)	160, 505
PpsI	GAGTC	2 cut(s)	160, 505
PpuMI	RGGWCCY	1 cut(s)	187
PsiI	TTATAA	1 cut(s)	1029
Psp124BI	GAGCTC	3 cut(s)	96, 124, 794
Psp5II	RGGWCCY	1 cut(s)	187
Psp6I	CCWGG	3 cut(s)	133, 667, 890
PspGI	CCWGG	3 cut(s)	133, 667, 890
PspN4I	GGNNCC	4 cut(s)	189, 364, 459, 508
PspPI	GGNCC	2 cut(s)	187, 362
PspPPI	RGGWCCY	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	1095
PsuI	RGATCY	2 cut(s)	425, 769
RsaI	GTAC	3 cut(s)	56, 905, 1035
RsaNI	GTAC	3 cut(s)	55, 904, 1034
RseI	CAYNNNNRTG	4 cut(s)	62, 102, 108, 468
SacI	GAGCTC	3 cut(s)	96, 124, 794
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	38, 522
SatI	GCNGC	3 cut(s)	288, 480, 861
Sau3AI	GATC	3 cut(s)	425, 671, 769
Sau96I	GGNCC	2 cut(s)	187, 362
SchI	GAGTC	2 cut(s)	160, 506
ScrFI	CCNGG	5 cut(s)	135, 281, 511, 669, 892
SduI	GDGCHC	8 cut(s)	96, 124, 462, 509, 794, 855, 921, 1003
SfaNI	GCATC	4 cut(s)	258, 430, 460, 528
SfcI	CTRYAG	1 cut(s)	1091
SfuI	TTCGAA	1 cut(s)	555
SinI	GGWCC	2 cut(s)	187, 362
SmiMI	CAYNNNNRTG	4 cut(s)	62, 102, 108, 468
SmlI	CTYRAG	2 cut(s)	309, 864
SmoI	CTYRAG	2 cut(s)	309, 864
Sse9I	AATT	8 cut(s)	9, 231, 451, 573, 646, 957, 1020, 1210
SsiI	CCGC	2 cut(s)	369, 595
SspI	AATATT	1 cut(s)	664
SspMI	CTAG	2 cut(s)	569, 929
SstI	GAGCTC	3 cut(s)	96, 124, 794
StyD4I	CCNGG	5 cut(s)	133, 279, 509, 667, 890
StyI	CCWWGG	1 cut(s)	385
TaqI	TCGA	3 cut(s)	468, 555, 1056
TasI	AATT	8 cut(s)	9, 231, 451, 573, 646, 957, 1020, 1210
Tru1I	TTAA	2 cut(s)	38, 522
Tru9I	TTAA	2 cut(s)	38, 522
TscAI	CASTG	3 cut(s)	147, 886, 1100
TseFI	GTSAC	2 cut(s)	304, 725
TseI	GCWGC	3 cut(s)	287, 479, 860
Tsp45I	GTSAC	2 cut(s)	304, 725
TspDTI	ATGAA	5 cut(s)	52, 80, 126, 639, 987
TspGWI	ACGGA	1 cut(s)	816
TspRI	CASTG	3 cut(s)	147, 886, 1100
VpaK11BI	GGWCC	2 cut(s)	187, 362
XapI	RAATTY	2 cut(s)	231, 451
XbaI	TCTAGA	1 cut(s)	928
XceI	RCATGY	1 cut(s)	1050
XmnI	GAANNNNTTC	1 cut(s)	233
XspI	CTAG	2 cut(s)	569, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.