Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002224

Physical Location & Seq

Genomic Coordinates Reverse (-)

16597572 .. 16601890

Gene Structure 4319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG186100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAGAAGATTAGTCCAAGAATCACTGTCCTTGGATGCTATCAAGAACTTAGTCCCGGATATTGAAGCCATTGCCATTTCTACCTTGGACTCATGGTCTGGTGGGCAAATTGTCAACACCTTTTATGAATTGAAGAAGTTCACTTTTGATGTTGCTGCATTGTTTATCTTCGGTCGCTTGAACACTCACTACAAAGAACAGCTAAAGAAAAACTATTTCACTCTAGACAAAGGTTACAATTGTTTCCCTATAAACCTACCAGGCTCTTCATACAATAAGTCGGTCTTGGCAAGGAGAAGGCTAAGCTTAATTCTCGGTGAGATAATAAAGGAGAGAAAGGAAAATAAATTGGTCGAGAAAGATCTATTGGGAAGCTTATTGAAGTTCAAGGATGAACAGGGTCAAACCTTAACACACAACCAGATCCTTGATAACATTATTGGGGTATTGTTTGCTGCTCAGGACACCACAGCTACTCTCCTGACTTGGATTCTCAAATACATGCACGATTACTCTGAACTTCTAGAAGCTATTCAGGTAGAACAGAGGGCAATTTTTGCAGCAAATGAGGGTGGAAACCAGTCGCTCAGTTGGGCTCAAACTAGAAATATGCCCCTTACCAGTAGGGCTGTAAAGGAGAGTTTGAGGATGGCAAGCATAATTTCTTTCACCTTCAGAGAAGCCGTTGAAGACGTTGAATATAAAGGATACTTGATCCGAAAGGGATGGAAGGTACTGCCTTTGTTCCGGAACATTCATCACAATCCTGATTTTTTCAATGAACCCCATAATTTCAATCCATCAAGATTTGAGCTTGGAATAAGACCCAATACGTTCGTGCCATTTGGCAATGGAGTTCATACTTGTCCTGGAAATGAAGTTGCCAAGACTGAGATACTTATTTTCATCTACCACCTCGTTAACAAGTTCAGGTGGGAAGCAGCGGCGTCCGATGGTGGGATTCATTATGACCCATTTCCAGTACCTCAGCAAGGACTTCCGGCCAAATTTTGGAAAGAGTATTCCGGCAGCCAAGGAGCGCTGTATGATAAAAGAGCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010295 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

354

Amino Acids

40.5

Weight (kDa)

8.81

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	3 - 315	2.8e-52	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19270 AT3G19270
fragaria_vesca	FvH4_2g06010 FvH4_2g34420
malus_domestica	MD02G1171600.v1.1 MD05G1081400.v1.1 MD08G1101400.v1.1 MD15G1082600.v1.1 MD15G1283400.v1.1
prunus_persica	Prupe.1G435300_v2.0.a1 Prupe.7G133800_v2.0.a1 Prupe.8G125800_v2.0.a1
pyrus_communis	pycom02g13830 pycom05g07510 pycom08g08190 pycom15g07740
rosa_chinensis	RchiOBHm_Chr2g0105591 RchiOBHm_Chr6g0257401 RchiOBHm_Chr6g0307951
rosa_laevigata	RLG00000010684 RLG00000014690 RLG00000017443
rosa_multiflora	Rmu_sc0000820.1_g000025 Rmu_sc0003252.1_g000022
rosa_roxburghii	Rroxscaffold_2G00138090 Rroxscaffold_7G00160740 Rroxscaffold_7G00208630
rosa_rugosa	Rorug02G0128400 Rorug02G0128500 Rorug05G0573200 Rorug06G0362000
rosa_samantha	Rh2AG180300 Rh2CG184500 Rh2DG186100 Rh6AG090500 Rh6AG471000 Rh6BG482000 Rh6CG078300 Rh6CG487400 Rh6DG074100 Rh6DG473500
rosa_wichuraiana	Rw6G007900 Rw6G041130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1011
AccIII	TCCGGA	1 cut(s)	747
AciI	CCGC	1 cut(s)	944
AclWI	GGATC	2 cut(s)	418, 709
AcoI	YGGCCR	1 cut(s)	1002
AcsI	RAATTY	1 cut(s)	1007
AcuI	CTGAAG	1 cut(s)	658
AcyI	GRCGYC	1 cut(s)	947
AfaI	GTAC	2 cut(s)	735, 984
AfeI	AGCGCT	1 cut(s)	1041
AfiI	CCNNNNNNNGG	3 cut(s)	957, 992, 1011
AgsI	TTSAA	9 cut(s)	65, 133, 181, 382, 388, 689, 698, 778, 796
AhdI	GACNNNNNGTC	1 cut(s)	94
AjnI	CCWGG	2 cut(s)	259, 868
AjuI	GAANNNNNNNTTGG	2 cut(s)	350, 382
AluBI	AGCT	6 cut(s)	202, 306, 375, 473, 530, 814
AluI	AGCT	6 cut(s)	202, 306, 375, 473, 530, 814
AlwI	GGATC	2 cut(s)	418, 709
Aor13HI	TCCGGA	1 cut(s)	747
Aor51HI	AGCGCT	1 cut(s)	1041
AoxI	GGCC	1 cut(s)	1002
ApeKI	GCWGC	5 cut(s)	155, 455, 560, 941, 1029
ApoI	RAATTY	1 cut(s)	1007
Asp700I	GAANNNNTTC	2 cut(s)	137, 531
AspLEI	GCGC	1 cut(s)	1042
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	329, 661
BanII	GRGCYC	1 cut(s)	598
BbsI	GAAGAC	1 cut(s)	696
BbvCI	CCTCAGC	1 cut(s)	987
BbvI	GCAGC	5 cut(s)	142, 442, 572, 953, 1041
BccI	CCATC	4 cut(s)	643, 720, 808, 947
BceAI	ACGGC	1 cut(s)	668
BciT130I	CCWGG	2 cut(s)	261, 870
BciVI	GTATCC	1 cut(s)	701
BcnI	CCSGG	1 cut(s)	56
BfaI	CTAG	4 cut(s)	224, 524, 603, 1063
BfoI	RGCGCY	1 cut(s)	1043
BfuI	GTATCC	1 cut(s)	701
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	6 cut(s)	156, 456, 561, 942, 945, 1030
BlpI	GCTNAGC	1 cut(s)	302
BlsI	GCNGC	6 cut(s)	157, 457, 562, 943, 946, 1031
Bme1390I	CCNGG	3 cut(s)	56, 261, 870
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmrFI	CCNGG	3 cut(s)	56, 261, 870
BmsI	GCATC	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	696
Bpu10I	CCTNAGC	2 cut(s)	459, 987
Bpu1102I	GCTNAGC	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	56
BsaHI	GRCGYC	1 cut(s)	947
BsaJI	CCNNGG	3 cut(s)	30, 84, 1033
BsaWI	WCCGGW	1 cut(s)	747
Bsc4I	CCNNNNNNNGG	3 cut(s)	957, 992, 1011
Bse1I	ACTGG	3 cut(s)	580, 621, 980
Bse3DI	GCAATG	2 cut(s)	69, 856
BseAI	TCCGGA	1 cut(s)	747
BseBI	CCWGG	2 cut(s)	261, 870
BseDI	CCNNGG	3 cut(s)	30, 84, 1033
BseGI	GGATG	4 cut(s)	40, 397, 654, 731
BseLI	CCNNNNNNNGG	3 cut(s)	957, 992, 1011
BseMI	GCAATG	2 cut(s)	69, 856
BseMII	CTCAG	4 cut(s)	473, 601, 882, 1001
BseNI	ACTGG	3 cut(s)	580, 621, 980
BseXI	GCAGC	5 cut(s)	142, 442, 572, 953, 1041
Bsh1285I	CGRYCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	1004
BsiEI	CGRYCG	1 cut(s)	175
BsiSI	CCGG	4 cut(s)	56, 748, 1001, 1026
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	3 cut(s)	957, 992, 1011
BsmFI	GGGAC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	1004
Bsp1286I	GDGCHC	1 cut(s)	598
Bsp13I	TCCGGA	1 cut(s)	747
Bsp143I	GATC	3 cut(s)	361, 423, 714
Bsp1720I	GCTNAGC	1 cut(s)	302
BspACI	CCGC	1 cut(s)	944
BspANI	GGCC	1 cut(s)	1004
BspCNI	CTCAG	4 cut(s)	472, 600, 883, 1000
BspEI	TCCGGA	1 cut(s)	747
BspPI	GGATC	2 cut(s)	418, 709
BspQI	GCTCTTC	1 cut(s)	271
BsrDI	GCAATG	2 cut(s)	69, 856
BsrI	ACTGG	3 cut(s)	580, 621, 980
BssECI	CCNNGG	3 cut(s)	30, 84, 1033
BssMI	GATC	3 cut(s)	361, 423, 714
BssNI	GRCGYC	1 cut(s)	947
BssT1I	CCWWGG	3 cut(s)	30, 84, 1033
Bst2UI	CCWGG	2 cut(s)	261, 870
Bst4CI	ACNGT	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	271
BstACI	GRCGYC	1 cut(s)	947
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstC8I	GCNNGC	1 cut(s)	655
BstDEI	CTNAG	6 cut(s)	49, 302, 459, 587, 891, 987
BstENI	CCTNNNNNAGG	1 cut(s)	990
BstF5I	GGATG	4 cut(s)	40, 397, 654, 731
BstH2I	RGCGCY	1 cut(s)	1043
BstHHI	GCGC	1 cut(s)	1042
BstKTI	GATC	3 cut(s)	364, 426, 717
BstMBI	GATC	3 cut(s)	361, 423, 714
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	557
BstNI	CCWGG	2 cut(s)	261, 870
BstNSI	RCATGY	1 cut(s)	505
BstSCI	CCNGG	3 cut(s)	54, 259, 868
BstV1I	GCAGC	5 cut(s)	142, 442, 572, 953, 1041
BstV2I	GAAGAC	1 cut(s)	696
BstX2I	RGATCY	2 cut(s)	361, 423
BstYI	RGATCY	2 cut(s)	361, 423
BsuI	GTATCC	1 cut(s)	701
BsuRI	GGCC	1 cut(s)	1004
BtsCI	GGATG	4 cut(s)	40, 397, 654, 731
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	655
CfoI	GCGC	1 cut(s)	1042
CseI	GACGC	1 cut(s)	936
Csp6I	GTAC	2 cut(s)	734, 983
CviAII	CATG	2 cut(s)	93, 502
CviQI	GTAC	2 cut(s)	734, 983
DdeI	CTNAG	6 cut(s)	49, 302, 459, 587, 891, 987
DpnI	GATC	3 cut(s)	363, 425, 716
DpnII	GATC	3 cut(s)	361, 423, 714
DriI	GACNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	1002
Eam1104I	CTCTTC	1 cut(s)	271
Eam1105I	GACNNNNNGTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	271
Eco130I	CCWWGG	3 cut(s)	30, 84, 1033
Eco24I	GRGCYC	1 cut(s)	598
Eco47III	AGCGCT	1 cut(s)	1041
Eco57I	CTGAAG	1 cut(s)	658
EcoNI	CCTNNNNNAGG	1 cut(s)	990
EcoRII	CCWGG	2 cut(s)	259, 868
EcoT14I	CCWWGG	3 cut(s)	30, 84, 1033
EcoT38I	GRGCYC	1 cut(s)	598
ErhI	CCWWGG	3 cut(s)	30, 84, 1033
FaeI	CATG	2 cut(s)	96, 505
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	2 cut(s)	92, 501
Fnu4HI	GCNGC	6 cut(s)	156, 456, 561, 942, 945, 1030
FokI	GGATG	4 cut(s)	47, 404, 661, 738
FriOI	GRGCYC	1 cut(s)	598
Fsp4HI	GCNGC	6 cut(s)	156, 456, 561, 942, 945, 1030
FspBI	CTAG	4 cut(s)	224, 524, 603, 1063
GlaI	GCGC	1 cut(s)	1041
GluI	GCNGC	6 cut(s)	156, 456, 561, 942, 945, 1030
HaeII	RGCGCY	1 cut(s)	1043
HaeIII	GGCC	1 cut(s)	1004
HapII	CCGG	4 cut(s)	56, 748, 1001, 1026
HgaI	GACGC	1 cut(s)	936
HhaI	GCGC	1 cut(s)	1042
Hin1I	GRCGYC	1 cut(s)	947
Hin1II	CATG	2 cut(s)	96, 505
Hin6I	GCGC	1 cut(s)	1040
HinP1I	GCGC	1 cut(s)	1040
HincII	GTYRAC	2 cut(s)	115, 922
HindII	GTYRAC	2 cut(s)	115, 922
HindIII	AAGCTT	2 cut(s)	304, 373
HinfI	GANTC	4 cut(s)	20, 89, 490, 961
HpaI	GTTAAC	1 cut(s)	922
HpaII	CCGG	4 cut(s)	56, 748, 1001, 1026
HphI	GGTGA	2 cut(s)	329, 661
Hpy166II	GTNNAC	3 cut(s)	115, 141, 922
Hpy188I	TCNGA	4 cut(s)	517, 677, 719, 952
Hpy188III	TCNNGA	9 cut(s)	43, 224, 355, 461, 481, 524, 748, 767, 804
Hpy8I	GTNNAC	3 cut(s)	115, 141, 922
HpyAV	CCTTC	3 cut(s)	291, 682, 724
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4IV	ACGT	2 cut(s)	693, 833
HpyCH4V	TGCA	3 cut(s)	158, 505, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	557
HpyF3I	CTNAG	6 cut(s)	49, 302, 459, 587, 891, 987
HpySE526I	ACGT	2 cut(s)	693, 833
Hsp92I	GRCGYC	1 cut(s)	947
Hsp92II	CATG	2 cut(s)	96, 505
HspAI	GCGC	1 cut(s)	1040
Kpn2I	TCCGGA	1 cut(s)	747
KspAI	GTTAAC	1 cut(s)	922
Kzo9I	GATC	3 cut(s)	361, 423, 714
LguI	GCTCTTC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	1037
Lsp1109I	GCAGC	5 cut(s)	142, 442, 572, 953, 1041
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	4 cut(s)	224, 524, 603, 1063
MaeII	ACGT	2 cut(s)	693, 833
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	3 cut(s)	363, 425, 716
MboI	GATC	3 cut(s)	361, 423, 714
MboII	GAAGA	5 cut(s)	18, 145, 160, 258, 701
MfeI	CAATTG	1 cut(s)	238
MflI	RGATCY	2 cut(s)	361, 423
MhlI	GDGCHC	1 cut(s)	598
MluCI	AATT	9 cut(s)	108, 128, 238, 309, 347, 552, 660, 790, 1007
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	5 cut(s)	540, 562, 639, 926, 996
MroI	TCCGGA	1 cut(s)	747
MroXI	GAANNNNTTC	2 cut(s)	137, 531
MseI	TTAA	3 cut(s)	308, 410, 921
MspA1I	CMGCKG	1 cut(s)	944
MspI	CCGG	4 cut(s)	56, 748, 1001, 1026
MspR9I	CCNGG	3 cut(s)	56, 261, 870
MunI	CAATTG	1 cut(s)	238
MvaI	CCWGG	2 cut(s)	261, 870
MwoI	GCNNNNNNNGC	1 cut(s)	557
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	3 cut(s)	361, 423, 714
NlaIII	CATG	2 cut(s)	96, 505
NspI	RCATGY	1 cut(s)	505
PciSI	GCTCTTC	1 cut(s)	271
PdmI	GAANNNNTTC	2 cut(s)	137, 531
PfeI	GAWTC	3 cut(s)	20, 490, 961
PflMI	CCANNNNNTGG	1 cut(s)	1011
PfoI	TCCNGGA	2 cut(s)	54, 868
PkrI	GCNGC	6 cut(s)	157, 457, 562, 943, 946, 1031
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp6I	CCWGG	2 cut(s)	259, 868
PspGI	CCWGG	2 cut(s)	259, 868
PsrI	GAACNNNNNNTAC	2 cut(s)	173, 205
PsuI	RGATCY	2 cut(s)	361, 423
RsaI	GTAC	2 cut(s)	735, 984
RsaNI	GTAC	2 cut(s)	734, 983
SapI	GCTCTTC	1 cut(s)	271
SaqAI	TTAA	3 cut(s)	308, 410, 921
SatI	GCNGC	6 cut(s)	156, 456, 561, 942, 945, 1030
Sau3AI	GATC	3 cut(s)	361, 423, 714
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	3 cut(s)	56, 261, 870
SduI	GDGCHC	1 cut(s)	598
SfaNI	GCATC	1 cut(s)	25
Sse9I	AATT	9 cut(s)	108, 128, 238, 309, 347, 552, 660, 790, 1007
SsiI	CCGC	1 cut(s)	944
SspMI	CTAG	4 cut(s)	224, 524, 603, 1063
StyD4I	CCNGG	3 cut(s)	54, 259, 868
StyI	CCWWGG	3 cut(s)	30, 84, 1033
TaaI	ACNGT	1 cut(s)	27
TaiI	ACGT	2 cut(s)	696, 836
TaqI	TCGA	1 cut(s)	354
TaqII	GACCGA	2 cut(s)	161, 271
TasI	AATT	9 cut(s)	108, 128, 238, 309, 347, 552, 660, 790, 1007
TauI	GCSGC	1 cut(s)	947
TfiI	GAWTC	3 cut(s)	20, 490, 961
Tru1I	TTAA	3 cut(s)	308, 410, 921
Tru9I	TTAA	3 cut(s)	308, 410, 921
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	5 cut(s)	155, 455, 560, 941, 1029
TspDTI	ATGAA	9 cut(s)	141, 258, 408, 746, 795, 848, 891, 895, 953
TspRI	CASTG	1 cut(s)	30
Van91I	CCANNNNNTGG	1 cut(s)	1011
XagI	CCTNNNNNAGG	1 cut(s)	990
XapI	RAATTY	1 cut(s)	1007
XbaI	TCTAGA	2 cut(s)	223, 523
XceI	RCATGY	1 cut(s)	505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XmnI	GAANNNNTTC	2 cut(s)	137, 531
XspI	CTAG	4 cut(s)	224, 524, 603, 1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.