Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002224

Physical Location & Seq

Genomic Coordinates Reverse (-)

10459230 .. 10462369

Gene Structure 3140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g07510.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGGAGATTGCTTCTGTTTTAATATGCATATTCCTCTTCCTCTCAACTCTTTTCTCATACCACTTGATAAAGAAACAAAAGAGAAATTGTATGCACAAAGCTAAACTCCCCCCAGGCTCAATGGGGTGGCCTTACATAGGAGAGACTCTCCAAATGTACTCTATGGACCCAAACGTATTCTTTGCTACAAAGCAAAAAAGGTATGGAGATGTATTCAAAACCCACATACTTGGATGCCCTTGTGTCATGCTGGCAAGCCCTGAGGCCACAAAGTTTGTGCTGGTGACTCATGCCCACTTGTTCAAACCCACATACCCGAAGAGCAAGGAGAAGTTGATTGGTCCTTCTGCTCTCTTCTTTCACCAAGGAGATTACCATAGTAGCCTTAGGAAACTCATTCAGAACTCTCTGTCCCCCAATCCCAACACTATTCAGAAACTAGTTCCTGACATTGAAGCATTGGTCATTTCTGCCTTGGACTCATGGGCTGAAGGACGCAAAGTCATCAACACGTATCATGAGATGAAAAAGTTCTCCTTTGATGTTGGCTTTCTGGCTATCTTTGGTCAGTTGGATGAGACTTACAGAGATAAGCTCAAGGAGAATTACTGCATAGTTGATAAGGGTTACAATTCCTTCCCAACAAAAATACCTGGAACTGCATATCAGAAAGCTCTCTTGGCAAGGAAGAGGCTTGGTGAGATTTTGAGTCAGATAATTTGTGAGAGGAAGGAAAAGAAAACCATGCAGAATGATTTATTGGGTCATCTGCTGAATTTCCAAGATGAAAATGGGCAAACTTTAACTGAGGATCAAATTTCTGATAACATCATTGGAGTTCTGTTTGCAGCCCAAGACACTACAGCTAGTGCTCTAACATGGGTTCTCAAGTACCTCCACGATAACCCGAAAATTCTTGAAGCTGTGGAGGCTGAGCAGAAGGCCATATATGAAGCTAATGAAGTATGTAAGAAGACCTTGAGTTGGGCACTGATTAAGAACATGCCACTCACATATAGGGTTATATTGGAGAGCTTGAGGATGGCAAGTATAATATCTTTCACATTTAGGGAAGCTGTGGTTGATGTAGAATTCAAAGGATATCTTATACCAAAGGGTTGGAAGGTGATGCCATTGTTTAGGAACATACATCATAGTCCAGAATTCTTCTCAGATCCTCAAAATTTTGATCCATCTAGGTTTGAGGTTGGTCCAAGGCCTAGCACTTTCATGCCATTTGGGAAAGGAGTGCATGCTTGTCCAGGAAATGAGCTTGCCAAGTTGGAGATGCTCAGTTTGGTCCACCACCTTGTGACCAAATTCAGGTGGGAAGTGGTGGGATCACAAAGTGGGATTCAGTATGGTCCATTTCCAATTCCTCAGCATGGACTACCAGCCAGATTTTGGAAAGAATCCAACCAATCTCAAACAAAACTTGGGGGCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010295 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

483

Amino Acids

54.87

Weight (kDa)

9.05

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19270 AT3G19270
fragaria_vesca	FvH4_2g06010 FvH4_2g34420
malus_domestica	MD02G1171600.v1.1 MD05G1081400.v1.1 MD08G1101400.v1.1 MD15G1082600.v1.1 MD15G1283400.v1.1
prunus_persica	Prupe.1G435300_v2.0.a1 Prupe.7G133800_v2.0.a1 Prupe.8G125800_v2.0.a1
pyrus_communis	pycom02g13830 pycom05g07510 pycom08g08190 pycom15g07740
rosa_chinensis	RchiOBHm_Chr2g0105591 RchiOBHm_Chr6g0257401 RchiOBHm_Chr6g0307951
rosa_laevigata	RLG00000010684 RLG00000014690 RLG00000017443
rosa_multiflora	Rmu_sc0000820.1_g000025 Rmu_sc0003252.1_g000022
rosa_roxburghii	Rroxscaffold_2G00138090 Rroxscaffold_7G00160740 Rroxscaffold_7G00208630
rosa_rugosa	Rorug02G0128400 Rorug02G0128500 Rorug05G0573200 Rorug06G0362000
rosa_samantha	Rh2AG180300 Rh2CG184500 Rh2DG186100 Rh6AG090500 Rh6AG471000 Rh6BG482000 Rh6CG078300 Rh6CG487400 Rh6DG074100 Rh6DG473500
rosa_wichuraiana	Rw6G007900 Rw6G041130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1404
AclWI	GGATC	4 cut(s)	819, 1169, 1184, 1348
AcsI	RAATTY	7 cut(s)	775, 816, 912, 1091, 1163, 1183, 1319
AcuI	CTGAAG	1 cut(s)	510
AdeI	CACNNNGTG	2 cut(s)	1312, 1349
AfaI	GTAC	2 cut(s)	158, 893
AfiI	CCNNNNNNNGG	5 cut(s)	137, 984, 1323, 1385, 1404
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	5 cut(s)	217, 304, 455, 920, 1096
AhdI	GACNNNNNGTC	1 cut(s)	500
AhlI	ACTAGT	1 cut(s)	439
AjnI	CCWGG	3 cut(s)	112, 652, 1261
AjuI	GAANNNNNNNTTGG	4 cut(s)	662, 694, 743, 775
AloI	GAACNNNNNNTCC	2 cut(s)	395, 427
AluBI	AGCT	9 cut(s)	101, 595, 674, 866, 923, 956, 1035, 1076, 1273
AluI	AGCT	9 cut(s)	101, 595, 674, 866, 923, 956, 1035, 1076, 1273
Alw21I	GWGCWC	1 cut(s)	874
Alw26I	GTCTC	2 cut(s)	137, 572
AlwI	GGATC	4 cut(s)	819, 1169, 1184, 1348
AoxI	GGCC	5 cut(s)	128, 264, 942, 1217, 1441
ApeKI	GCWGC	1 cut(s)	848
ApoI	RAATTY	7 cut(s)	775, 816, 912, 1091, 1163, 1183, 1319
Asp700I	GAANNNNTTC	1 cut(s)	530
AspS9I	GGNCC	6 cut(s)	166, 341, 1211, 1300, 1364, 1441
AsuHPI	GGTGA	4 cut(s)	295, 353, 710, 1138
AvaII	GGWCC	5 cut(s)	166, 341, 1211, 1300, 1364
AxyI	CCTNAGG	2 cut(s)	261, 386
BaeGI	GKGCMC	1 cut(s)	991
BbsI	GAAGAC	1 cut(s)	980
Bbv12I	GWGCWC	1 cut(s)	874
BbvCI	CCTCAGC	1 cut(s)	1380
BbvI	GCAGC	1 cut(s)	860
BccI	CCATC	2 cut(s)	1036, 1201
BciT130I	CCWGG	3 cut(s)	114, 654, 1263
BcoDI	GTCTC	2 cut(s)	137, 572
BcuI	ACTAGT	1 cut(s)	439
BfaI	CTAG	4 cut(s)	440, 867, 1197, 1221
BfmI	CTRYAG	1 cut(s)	861
BisI	GCNGC	1 cut(s)	849
BlpI	GCTNAGC	1 cut(s)	933
BlsI	GCNGC	1 cut(s)	850
Bme1390I	CCNGG	3 cut(s)	114, 654, 1263
Bme18I	GGWCC	5 cut(s)	166, 341, 1211, 1300, 1364
BmeRI	GACNNNNNGTC	1 cut(s)	500
BmgT120I	GGNCC	6 cut(s)	166, 341, 1211, 1300, 1364, 1441
BmiI	GGNNCC	2 cut(s)	168, 1442
BmrFI	CCNGG	3 cut(s)	114, 654, 1263
BmsI	GCATC	3 cut(s)	224, 1119, 1278
BpiI	GAAGAC	1 cut(s)	980
BplI	GAGNNNNNCTC	4 cut(s)	132, 164, 579, 611
Bpu10I	CCTNAGC	1 cut(s)	1380
Bpu1102I	GCTNAGC	1 cut(s)	933
BpuEI	CTTGAG	4 cut(s)	581, 872, 1000, 1057
BsaAI	YACGTR	1 cut(s)	513
BsaJI	CCNNGG	4 cut(s)	112, 364, 474, 1214
Bsc4I	CCNNNNNNNGG	5 cut(s)	137, 984, 1323, 1385, 1404
Bse21I	CCTNAGG	2 cut(s)	261, 386
BseBI	CCWGG	3 cut(s)	114, 654, 1263
BseDI	CCNNGG	4 cut(s)	112, 364, 474, 1214
BseGI	GGATG	3 cut(s)	239, 580, 1047
BseLI	CCNNNNNNNGG	5 cut(s)	137, 984, 1323, 1385, 1404
BseMII	CTCAG	6 cut(s)	252, 798, 924, 1185, 1306, 1394
BseSI	GKGCMC	1 cut(s)	991
BseXI	GCAGC	1 cut(s)	860
BshFI	GGCC	5 cut(s)	130, 266, 944, 1219, 1443
BsiHKAI	GWGCWC	1 cut(s)	874
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	5 cut(s)	137, 984, 1323, 1385, 1404
BsmAI	GTCTC	2 cut(s)	137, 572
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	5 cut(s)	130, 266, 944, 1219, 1443
Bsp1286I	GDGCHC	2 cut(s)	874, 991
Bsp143I	GATC	4 cut(s)	811, 1174, 1189, 1340
Bsp1720I	GCTNAGC	1 cut(s)	933
BspANI	GGCC	5 cut(s)	130, 266, 944, 1219, 1443
BspCNI	CTCAG	6 cut(s)	253, 799, 925, 1184, 1305, 1393
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	168, 1442
BspPI	GGATC	4 cut(s)	819, 1169, 1184, 1348
BspQI	GCTCTTC	1 cut(s)	314
BssECI	CCNNGG	4 cut(s)	112, 364, 474, 1214
BssMI	GATC	4 cut(s)	811, 1174, 1189, 1340
BssT1I	CCWWGG	3 cut(s)	364, 474, 1214
Bst2UI	CCWGG	3 cut(s)	114, 654, 1263
Bst6I	CTCTTC	4 cut(s)	41, 314, 359, 683
BstBAI	YACGTR	1 cut(s)	513
BstC8I	GCNNGC	4 cut(s)	252, 256, 1254, 1275
BstDEI	CTNAG	7 cut(s)	261, 386, 807, 933, 1171, 1292, 1380
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	3 cut(s)	239, 580, 1047
BstKTI	GATC	4 cut(s)	814, 1177, 1192, 1343
BstMAI	GTCTC	2 cut(s)	137, 572
BstMBI	GATC	4 cut(s)	811, 1174, 1189, 1340
BstMWI	GCNNNNNNNGC	2 cut(s)	680, 929
BstNI	CCWGG	3 cut(s)	114, 654, 1263
BstNSI	RCATGY	2 cut(s)	1006, 1256
BstSCI	CCNGG	3 cut(s)	112, 652, 1261
BstSFI	CTRYAG	1 cut(s)	861
BstSLI	GKGCMC	1 cut(s)	991
BstV1I	GCAGC	1 cut(s)	860
BstV2I	GAAGAC	1 cut(s)	980
BstX2I	RGATCY	1 cut(s)	1174
BstXI	CCANNNNNNTGG	2 cut(s)	230, 1119
BstYI	RGATCY	1 cut(s)	1174
Bsu36I	CCTNAGG	2 cut(s)	261, 386
BsuRI	GGCC	5 cut(s)	130, 266, 944, 1219, 1443
BtsCI	GGATG	3 cut(s)	239, 580, 1047
BtsIMutI	CAGTG	1 cut(s)	989
Cac8I	GCNNGC	4 cut(s)	252, 256, 1254, 1275
CciI	TCATGA	1 cut(s)	517
Cfr13I	GGNCC	6 cut(s)	166, 341, 1211, 1300, 1364, 1441
CseI	GACGC	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	157, 892
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviQI	GTAC	2 cut(s)	157, 892
DdeI	CTNAG	7 cut(s)	261, 386, 807, 933, 1171, 1292, 1380
DpnI	GATC	4 cut(s)	813, 1176, 1191, 1342
DpnII	GATC	4 cut(s)	811, 1174, 1189, 1340
DraIII	CACNNNGTG	2 cut(s)	1312, 1349
DriI	GACNNNNNGTC	1 cut(s)	500
Eam1104I	CTCTTC	4 cut(s)	41, 314, 359, 683
Eam1105I	GACNNNNNGTC	1 cut(s)	500
EarI	CTCTTC	4 cut(s)	41, 314, 359, 683
Eco130I	CCWWGG	3 cut(s)	364, 474, 1214
Eco147I	AGGCCT	1 cut(s)	1219
Eco32I	GATATC	1 cut(s)	1103
Eco47I	GGWCC	5 cut(s)	166, 341, 1211, 1300, 1364
Eco57I	CTGAAG	1 cut(s)	510
Eco81I	CCTNAGG	2 cut(s)	261, 386
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoRI	GAATTC	2 cut(s)	1091, 1163
EcoRII	CCWGG	3 cut(s)	112, 652, 1261
EcoRV	GATATC	1 cut(s)	1103
EcoT14I	CCWWGG	3 cut(s)	364, 474, 1214
EcoT22I	ATGCAT	1 cut(s)	29
ErhI	CCWWGG	3 cut(s)	364, 474, 1214
FalI	AAGNNNNNCTT	6 cut(s)	521, 553, 962, 994, 1089, 1121
FaqI	GGGAC	1 cut(s)	397
Fnu4HI	GCNGC	1 cut(s)	849
FokI	GGATG	3 cut(s)	246, 587, 1054
Fsp4HI	GCNGC	1 cut(s)	849
FspBI	CTAG	4 cut(s)	440, 867, 1197, 1221
GluI	GCNGC	1 cut(s)	849
HaeIII	GGCC	5 cut(s)	130, 266, 944, 1219, 1443
HgaI	GACGC	1 cut(s)	504
HinfI	GANTC	6 cut(s)	145, 286, 479, 709, 1354, 1412
HphI	GGTGA	4 cut(s)	295, 353, 710, 1138
Hpy166II	GTNNAC	1 cut(s)	1303
Hpy188I	TCNGA	6 cut(s)	402, 435, 669, 714, 823, 1174
Hpy188III	TCNNGA	4 cut(s)	446, 518, 917, 1160
Hpy8I	GTNNAC	1 cut(s)	1303
HpyAV	CCTTC	6 cut(s)	354, 485, 646, 724, 934, 1117
HpyCH4IV	ACGT	2 cut(s)	174, 512
HpyCH4V	TGCA	7 cut(s)	27, 94, 612, 662, 748, 848, 1252
HpyF10VI	GCNNNNNNNGC	2 cut(s)	680, 929
HpyF3I	CTNAG	7 cut(s)	261, 386, 807, 933, 1171, 1292, 1380
HpySE526I	ACGT	2 cut(s)	174, 512
Kzo9I	GATC	4 cut(s)	811, 1174, 1189, 1340
LguI	GCTCTTC	1 cut(s)	314
Lsp1109I	GCAGC	1 cut(s)	860
LweI	GCATC	3 cut(s)	224, 1119, 1278
MaeI	CTAG	4 cut(s)	440, 867, 1197, 1221
MaeII	ACGT	2 cut(s)	174, 512
MaeIII	GTNAC	3 cut(s)	283, 626, 1312
MalI	GATC	4 cut(s)	813, 1176, 1191, 1342
MboI	GATC	4 cut(s)	811, 1174, 1189, 1340
MboII	GAAGA	6 cut(s)	28, 331, 346, 700, 985, 1159
MflI	RGATCY	1 cut(s)	1174
MhlI	GDGCHC	2 cut(s)	874, 991
MlyI	GAGTC	4 cut(s)	139, 280, 473, 718
MmeI	TCCRAC	4 cut(s)	552, 1100, 1263, 1440
Mph1103I	ATGCAT	1 cut(s)	29
MroXI	GAANNNNTTC	1 cut(s)	530
MseI	TTAA	3 cut(s)	20, 803, 996
MslI	CAYNNNNRTG	1 cut(s)	1229
MspR9I	CCNGG	3 cut(s)	114, 654, 1263
MvaI	CCWGG	3 cut(s)	114, 654, 1263
MwoI	GCNNNNNNNGC	2 cut(s)	680, 929
NdeII	GATC	4 cut(s)	811, 1174, 1189, 1340
NlaIV	GGNNCC	2 cut(s)	168, 1442
NmuCI	GTSAC	2 cut(s)	283, 1312
NsiI	ATGCAT	1 cut(s)	29
NspI	RCATGY	2 cut(s)	1006, 1256
PaeI	GCATGC	1 cut(s)	1256
PagI	TCATGA	1 cut(s)	517
PceI	AGGCCT	1 cut(s)	1219
PciSI	GCTCTTC	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	530
PfeI	GAWTC	2 cut(s)	1354, 1412
PflMI	CCANNNNNTGG	1 cut(s)	1404
PfoI	TCCNGGA	1 cut(s)	1261
PkrI	GCNGC	1 cut(s)	850
PleI	GAGTC	4 cut(s)	139, 280, 473, 717
PpsI	GAGTC	4 cut(s)	139, 280, 473, 717
Ppu21I	YACGTR	1 cut(s)	513
Psp6I	CCWGG	3 cut(s)	112, 652, 1261
PspGI	CCWGG	3 cut(s)	112, 652, 1261
PspN4I	GGNNCC	2 cut(s)	168, 1442
PspPI	GGNCC	6 cut(s)	166, 341, 1211, 1300, 1364, 1441
PsuI	RGATCY	1 cut(s)	1174
RsaI	GTAC	2 cut(s)	158, 893
RsaNI	GTAC	2 cut(s)	157, 892
RseI	CAYNNNNRTG	1 cut(s)	1229
SapI	GCTCTTC	1 cut(s)	314
SaqAI	TTAA	3 cut(s)	20, 803, 996
SatI	GCNGC	1 cut(s)	849
Sau3AI	GATC	4 cut(s)	811, 1174, 1189, 1340
Sau96I	GGNCC	6 cut(s)	166, 341, 1211, 1300, 1364, 1441
SchI	GAGTC	4 cut(s)	139, 280, 473, 718
ScrFI	CCNGG	3 cut(s)	114, 654, 1263
SduI	GDGCHC	2 cut(s)	874, 991
SfaNI	GCATC	3 cut(s)	224, 1119, 1278
SfcI	CTRYAG	1 cut(s)	861
SinI	GGWCC	5 cut(s)	166, 341, 1211, 1300, 1364
SmiMI	CAYNNNNRTG	1 cut(s)	1229
SmlI	CTYRAG	4 cut(s)	596, 887, 979, 1036
SmoI	CTYRAG	4 cut(s)	596, 887, 979, 1036
SpeI	ACTAGT	1 cut(s)	439
SphI	GCATGC	1 cut(s)	1256
SseBI	AGGCCT	1 cut(s)	1219
SspMI	CTAG	4 cut(s)	440, 867, 1197, 1221
StuI	AGGCCT	1 cut(s)	1219
StyD4I	CCNGG	3 cut(s)	112, 652, 1261
StyI	CCWWGG	3 cut(s)	364, 474, 1214
TaiI	ACGT	2 cut(s)	177, 515
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	2 cut(s)	1354, 1412
Tru1I	TTAA	3 cut(s)	20, 803, 996
Tru9I	TTAA	3 cut(s)	20, 803, 996
TscAI	CASTG	1 cut(s)	996
TseFI	GTSAC	2 cut(s)	283, 1312
TseI	GCWGC	1 cut(s)	848
Tsp45I	GTSAC	2 cut(s)	283, 1312
TspDTI	ATGAA	5 cut(s)	539, 801, 966, 975, 1219
TspRI	CASTG	1 cut(s)	996
Van91I	CCANNNNNTGG	1 cut(s)	1404
VpaK11BI	GGWCC	5 cut(s)	166, 341, 1211, 1300, 1364
XagI	CCTNNNNNAGG	1 cut(s)	135
XapI	RAATTY	7 cut(s)	775, 816, 912, 1091, 1163, 1183, 1319
XceI	RCATGY	2 cut(s)	1006, 1256
XcmI	CCANNNNNNNNNTGG	2 cut(s)	788, 1401
XmnI	GAANNNNTTC	1 cut(s)	530
XspI	CTAG	4 cut(s)	440, 867, 1197, 1221
Zsp2I	ATGCAT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.