Rh6DG074100

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002224
Physical Location & Seq
Forward (+)
8259399 .. 8263843
4445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG074100.1

Sequence Viewer

Length: 1194 bp
ATGGAGAAAAGTGCTTCTACTCTGATTTTCATATGTATATTTCTCTCAACTCTGTTCTTATACCGCTGCATAAAGAAACAAAAGAGAAAATCTATGCATAAAGCTAAGCTTCCGCCAGGATCAATGGGATGGCCTTGCATAGGAGAGACTCTACAAATGTACTCTATGGATCCAAACAAATTCTTTGCCACAAAGCAGAAAAGGTATGGAGAGATATTCAAAACCCACATACTTGGCTGTCCTTGTGTCATGCTGGCAAGCCCTGAGGCCACAAAGTTTGTGTTGGTGACTCATGCTCACCTCTTCAAGCCCACATACCCGAAAAGCAAGGAGAAGCTGATTGGCCCTTCTGCTTTGTTCTTTCACCAGGGAGATTACCACAGCAGCCTTAAGAAACTCATTCAGAGCTCTCTGTCTCCGAACCCCAATACTATGCAGAAACTGGTTCCTGACATTGAAGCCTTAGCCATTTCTGCCTTGGAATCATGGGCTGCAGCCGGAACTGTCATCAACACCTATCATGAAATGAAGAAGTTCGTGTTTGATGTCGGTTTTCTTGCCATTTTTGGCCGGCTGGATGATAGTTATAGAGAGAAGCTCAAGGAGAGCTACCACATCGTAGACGCGGGTTACAATTCGTTTCCAACAAATATACCAGGCACTGCATATCAGAAAGCTCTCTTAGCGAGGAAAAGGCTTAGTCAGATTCTGAGGCAGATAATTTGTGAGAGGAAGGAAAAGAAAATACTGCAGAAAGATCTCTTGGGTGATCTGCTGAATTTTCAAAATGAAAAGGGGCAAAACTTAACTGAGGATCAAATTTCCGATAACATCATTGGAGTACTGTTTGCTGCCCAAGACACTACAGCCAGTGTTTTAACATGGATTCTCAAGTACCTCCATGACAACCAAAACATTCTTGAAGCTGTGAAGGCCGAGCAGAAGGCAATATATGATGCAAATGATGGGTATAAGAGGCCATTGACTTGGGCACAAATCAGAAATATGCCACTTACACATAGAGTTATATTAGAGAGCTTGAGGATGGCAAGTATTATTTCTTTTGCATTTAGGGAAGCTGTGGTTGATGTAGAATACAAAGGTGAGTGCTCAAACTCAATTTATGTGTCTTCTAGGGAGCATTCAAAAGAGTTTATTCCAATATGTTTAATCAATATTTATCCAAAAAAATAA

Protein Analysis

397

Amino Acids

45.25

Weight (kDa)

9.28

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 38 - 368 2.4e-41 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 621
AccII CGCG 1 cut(s) 626
AciI CCGC 3 cut(s) 64, 113, 626
AclWI GGATC 4 cut(s) 127, 164, 177, 822
AcoI YGGCCR 1 cut(s) 568
AcsI RAATTY 3 cut(s) 179, 778, 819
AfaI GTAC 3 cut(s) 161, 843, 896
AfiI CCNNNNNNNGG 1 cut(s) 140
AflII CTTAAG 1 cut(s) 389
AgsI TTSAA 6 cut(s) 220, 307, 458, 785, 923, 1146
AjnI CCWGG 3 cut(s) 115, 366, 655
AjuI GAANNNNNNNTTGG 2 cut(s) 746, 778
Alw21I GWGCWC 2 cut(s) 410, 1112
Alw26I GTCTC 2 cut(s) 140, 420
AlwI GGATC 4 cut(s) 127, 164, 177, 822
AlwNI CAGNNNCTG 3 cut(s) 442, 662, 709
AoxI GGCC 6 cut(s) 131, 267, 343, 568, 933, 977
ApeKI GCWGC 5 cut(s) 66, 384, 491, 494, 851
ApoI RAATTY 3 cut(s) 179, 778, 819
Asp700I GAANNNNTTC 1 cut(s) 533
AspS9I GGNCC 1 cut(s) 344
AsuHPI GGTGA 5 cut(s) 290, 298, 356, 779, 1115
AxyI CCTNAGG 1 cut(s) 264
BaeGI GKGCMC 1 cut(s) 994
BamHI GGATCC 1 cut(s) 169
BanII GRGCYC 1 cut(s) 410
BbsI GAAGAC 1 cut(s) 1122
Bbv12I GWGCWC 2 cut(s) 410, 1112
BbvI GCAGC 5 cut(s) 53, 396, 478, 506, 838
BccI CCATC 3 cut(s) 123, 959, 1039
BciT130I CCWGG 3 cut(s) 117, 368, 657
BcoDI GTCTC 2 cut(s) 140, 420
BfaI CTAG 1 cut(s) 1134
BfmI CTRYAG 3 cut(s) 492, 749, 864
BfrI CTTAAG 1 cut(s) 389
BglII AGATCT 1 cut(s) 757
BisI GCNGC 5 cut(s) 67, 385, 492, 495, 852
BlpI GCTNAGC 1 cut(s) 105
BlsI GCNGC 5 cut(s) 68, 386, 493, 496, 853
BmcAI AGTACT 1 cut(s) 843
Bme1390I CCNGG 3 cut(s) 117, 368, 657
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 2 cut(s) 171, 447
BmrFI CCNGG 3 cut(s) 117, 368, 657
BmsI GCATC 1 cut(s) 946
BpiI GAAGAC 1 cut(s) 1122
BplI GAGNNNNNCTC 2 cut(s) 582, 614
Bpu10I CCTNAGC 1 cut(s) 463
Bpu1102I GCTNAGC 1 cut(s) 105
BpuEI CTTGAG 3 cut(s) 584, 875, 1060
BsaJI CCNNGG 2 cut(s) 367, 477
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse118I RCCGGY 1 cut(s) 570
Bse1I ACTGG 2 cut(s) 447, 870
Bse21I CCTNAGG 1 cut(s) 264
BseBI CCWGG 3 cut(s) 117, 368, 657
BseDI CCNNGG 2 cut(s) 367, 477
BseGI GGATG 3 cut(s) 134, 583, 1050
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMII CTCAG 3 cut(s) 255, 701, 801
BseNI ACTGG 2 cut(s) 447, 870
BseSI GKGCMC 1 cut(s) 994
BseXI GCAGC 5 cut(s) 53, 396, 478, 506, 838
Bsh1236I CGCG 1 cut(s) 626
BshFI GGCC 6 cut(s) 133, 269, 345, 570, 935, 979
BsiHKAI GWGCWC 2 cut(s) 410, 1112
BsiSI CCGG 2 cut(s) 498, 571
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 2 cut(s) 140, 420
BsmI GAATGC 1 cut(s) 1141
BsnI GGCC 6 cut(s) 133, 269, 345, 570, 935, 979
Bsp1286I GDGCHC 3 cut(s) 410, 994, 1112
Bsp143I GATC 5 cut(s) 119, 169, 757, 769, 814
Bsp1720I GCTNAGC 1 cut(s) 105
BspACI CCGC 3 cut(s) 64, 113, 626
BspANI GGCC 6 cut(s) 133, 269, 345, 570, 935, 979
BspCNI CTCAG 3 cut(s) 256, 702, 802
BspFNI CGCG 1 cut(s) 626
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 2 cut(s) 171, 447
BspMAI CTGCAG 2 cut(s) 496, 753
BspPI GGATC 4 cut(s) 127, 164, 177, 822
BspTI CTTAAG 1 cut(s) 389
BsrFI RCCGGY 1 cut(s) 570
BsrI ACTGG 2 cut(s) 447, 870
BssAI RCCGGY 1 cut(s) 570
BssECI CCNNGG 2 cut(s) 367, 477
BssMI GATC 5 cut(s) 119, 169, 757, 769, 814
BssT1I CCWWGG 1 cut(s) 477
Bst2UI CCWGG 3 cut(s) 117, 368, 657
Bst4CI ACNGT 2 cut(s) 505, 846
Bst6I CTCTTC 1 cut(s) 308
BstAFI CTTAAG 1 cut(s) 389
BstC8I GCNNGC 3 cut(s) 255, 259, 572
BstDEI CTNAG 7 cut(s) 105, 264, 463, 682, 698, 710, 810
BstENI CCTNNNNNAGG 1 cut(s) 138
BstF5I GGATG 3 cut(s) 134, 583, 1050
BstFNI CGCG 1 cut(s) 626
BstKTI GATC 5 cut(s) 122, 172, 760, 772, 817
BstMAI GTCTC 2 cut(s) 140, 420
BstMBI GATC 5 cut(s) 119, 169, 757, 769, 814
BstMWI GCNNNNNNNGC 3 cut(s) 473, 683, 932
BstNI CCWGG 3 cut(s) 117, 368, 657
BstSCI CCNGG 3 cut(s) 115, 366, 655
BstSFI CTRYAG 3 cut(s) 492, 749, 864
BstSLI GKGCMC 1 cut(s) 994
BstUI CGCG 1 cut(s) 626
BstV1I GCAGC 5 cut(s) 53, 396, 478, 506, 838
BstV2I GAAGAC 1 cut(s) 1122
BstX2I RGATCY 2 cut(s) 169, 757
BstXI CCANNNNNNTGG 2 cut(s) 233, 987
BstYI RGATCY 2 cut(s) 169, 757
Bsu36I CCTNAGG 1 cut(s) 264
BsuRI GGCC 6 cut(s) 133, 269, 345, 570, 935, 979
BtsCI GGATG 3 cut(s) 134, 583, 1050
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 2 cut(s) 660, 877
Cac8I GCNNGC 3 cut(s) 255, 259, 572
CaiI CAGNNNCTG 3 cut(s) 442, 662, 709
CciI TCATGA 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 570
Cfr13I GGNCC 1 cut(s) 344
CseI GACGC 1 cut(s) 632
Csp6I GTAC 3 cut(s) 160, 842, 895
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviAII CATG 6 cut(s) 250, 293, 486, 521, 882, 902
CviQI GTAC 3 cut(s) 160, 842, 895
DdeI CTNAG 7 cut(s) 105, 264, 463, 682, 698, 710, 810
DpnI GATC 5 cut(s) 121, 171, 759, 771, 816
DpnII GATC 5 cut(s) 119, 169, 757, 769, 814
EaeI YGGCCR 1 cut(s) 568
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
EciI GGCGGA 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 410
Eco53kI GAGCTC 1 cut(s) 408
Eco81I CCTNAGG 1 cut(s) 264
EcoICRI GAGCTC 1 cut(s) 408
EcoNI CCTNNNNNAGG 1 cut(s) 138
EcoRII CCWGG 3 cut(s) 115, 366, 655
EcoT14I CCWWGG 1 cut(s) 477
EcoT22I ATGCAT 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 410
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 6 cut(s) 253, 296, 489, 524, 885, 905
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FatI CATG 6 cut(s) 249, 292, 485, 520, 881, 901
FauI CCCGC 1 cut(s) 619
FauNDI CATATG 1 cut(s) 32
FblI GTMKAC 1 cut(s) 621
Fnu4HI GCNGC 5 cut(s) 67, 385, 492, 495, 852
FokI GGATG 3 cut(s) 141, 590, 1057
FriOI GRGCYC 1 cut(s) 410
Fsp4HI GCNGC 5 cut(s) 67, 385, 492, 495, 852
FspBI CTAG 1 cut(s) 1134
GluI GCNGC 5 cut(s) 67, 385, 492, 495, 852
HaeIII GGCC 6 cut(s) 133, 269, 345, 570, 935, 979
HapII CCGG 2 cut(s) 498, 571
HgaI GACGC 1 cut(s) 632
Hin1II CATG 6 cut(s) 253, 296, 489, 524, 885, 905
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 5 cut(s) 148, 289, 482, 706, 886
HpaII CCGG 2 cut(s) 498, 571
HphI GGTGA 5 cut(s) 290, 298, 356, 779, 1115
Hpy166II GTNNAC 1 cut(s) 622
Hpy188I TCNGA 8 cut(s) 24, 405, 420, 672, 705, 711, 826, 1001
Hpy188III TCNNGA 3 cut(s) 449, 521, 920
Hpy8I GTNNAC 1 cut(s) 622
HpyAV CCTTC 4 cut(s) 357, 727, 925, 937
HpyCH4III ACNGT 2 cut(s) 505, 846
HpyCH4V TGCA 9 cut(s) 69, 97, 138, 436, 494, 665, 751, 959, 1067
HpyF10VI GCNNNNNNNGC 3 cut(s) 473, 683, 932
HpyF3I CTNAG 7 cut(s) 105, 264, 463, 682, 698, 710, 810
Hsp92II CATG 6 cut(s) 253, 296, 489, 524, 885, 905
KroI GCCGGC 1 cut(s) 570
KroNI GCCGGC 1 cut(s) 572
Kzo9I GATC 5 cut(s) 119, 169, 757, 769, 814
LmnI GCTCC 1 cut(s) 1138
Lsp1109I GCAGC 5 cut(s) 53, 396, 478, 506, 838
LweI GCATC 1 cut(s) 946
MaeI CTAG 1 cut(s) 1134
MaeIII GTNAC 2 cut(s) 286, 629
MalI GATC 5 cut(s) 121, 171, 759, 771, 816
MboI GATC 5 cut(s) 119, 169, 757, 769, 814
MboII GAAGA 3 cut(s) 295, 541, 1122
MflI RGATCY 2 cut(s) 169, 757
MhlI GDGCHC 3 cut(s) 410, 994, 1112
MluCI AATT 6 cut(s) 179, 634, 720, 778, 819, 1119
MlyI GAGTC 2 cut(s) 142, 283
MmeI TCCRAC 1 cut(s) 668
MnlI CCTC 9 cut(s) 259, 311, 681, 705, 723, 805, 908, 969, 1035
Mph1103I ATGCAT 1 cut(s) 99
MroNI GCCGGC 1 cut(s) 570
MroXI GAANNNNTTC 1 cut(s) 533
MseI TTAA 4 cut(s) 390, 806, 878, 1169
MspA1I CMGCKG 1 cut(s) 66
MspCI CTTAAG 1 cut(s) 389
MspI CCGG 2 cut(s) 498, 571
MspR9I CCNGG 3 cut(s) 117, 368, 657
Mva1269I GAATGC 1 cut(s) 1141
MvaI CCWGG 3 cut(s) 117, 368, 657
MvnI CGCG 1 cut(s) 626
MwoI GCNNNNNNNGC 3 cut(s) 473, 683, 932
NaeI GCCGGC 1 cut(s) 572
NdeI CATATG 1 cut(s) 32
NdeII GATC 5 cut(s) 119, 169, 757, 769, 814
NgoMIV GCCGGC 1 cut(s) 570
NlaIII CATG 6 cut(s) 253, 296, 489, 524, 885, 905
NlaIV GGNNCC 2 cut(s) 171, 447
NmeAIII GCCGAG 1 cut(s) 961
NmuCI GTSAC 1 cut(s) 286
NsiI ATGCAT 1 cut(s) 99
PagI TCATGA 1 cut(s) 520
PctI GAATGC 1 cut(s) 1141
PdiI GCCGGC 1 cut(s) 572
PdmI GAANNNNTTC 1 cut(s) 533
PfeI GAWTC 3 cut(s) 482, 706, 886
PkrI GCNGC 5 cut(s) 68, 386, 493, 496, 853
PleI GAGTC 2 cut(s) 142, 283
PpsI GAGTC 2 cut(s) 142, 283
Psp124BI GAGCTC 1 cut(s) 410
Psp6I CCWGG 3 cut(s) 115, 366, 655
PspGI CCWGG 3 cut(s) 115, 366, 655
PspN4I GGNNCC 2 cut(s) 171, 447
PspPI GGNCC 1 cut(s) 344
PstI CTGCAG 2 cut(s) 496, 753
PstNI CAGNNNCTG 3 cut(s) 442, 662, 709
PsuI RGATCY 2 cut(s) 169, 757
RsaI GTAC 3 cut(s) 161, 843, 896
RsaNI GTAC 3 cut(s) 160, 842, 895
SacI GAGCTC 1 cut(s) 410
SaqAI TTAA 4 cut(s) 390, 806, 878, 1169
SatI GCNGC 5 cut(s) 67, 385, 492, 495, 852
Sau3AI GATC 5 cut(s) 119, 169, 757, 769, 814
Sau96I GGNCC 1 cut(s) 344
ScaI AGTACT 1 cut(s) 843
SchI GAGTC 2 cut(s) 142, 283
ScrFI CCNGG 3 cut(s) 117, 368, 657
SduI GDGCHC 3 cut(s) 410, 994, 1112
SfaNI GCATC 1 cut(s) 946
SfcI CTRYAG 3 cut(s) 492, 749, 864
SmlI CTYRAG 4 cut(s) 389, 599, 890, 1039
SmoI CTYRAG 4 cut(s) 389, 599, 890, 1039
Sse9I AATT 6 cut(s) 179, 634, 720, 778, 819, 1119
SsiI CCGC 3 cut(s) 64, 113, 626
SspI AATATT 1 cut(s) 1177
SspMI CTAG 1 cut(s) 1134
SstI GAGCTC 1 cut(s) 410
StyD4I CCNGG 3 cut(s) 115, 366, 655
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 2 cut(s) 505, 846
TasI AATT 6 cut(s) 179, 634, 720, 778, 819, 1119
TatI WGTACW 2 cut(s) 159, 841
TfiI GAWTC 3 cut(s) 482, 706, 886
Tru1I TTAA 4 cut(s) 390, 806, 878, 1169
Tru9I TTAA 4 cut(s) 390, 806, 878, 1169
TscAI CASTG 2 cut(s) 667, 877
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 5 cut(s) 66, 384, 491, 494, 851
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 4 cut(s) 19, 537, 542, 804
TspRI CASTG 2 cut(s) 667, 877
Vha464I CTTAAG 1 cut(s) 389
XagI CCTNNNNNAGG 1 cut(s) 138
XapI RAATTY 3 cut(s) 179, 778, 819
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XmiI GTMKAC 1 cut(s) 621
XmnI GAANNNNTTC 1 cut(s) 533
XspI CTAG 1 cut(s) 1134
ZrmI AGTACT 1 cut(s) 843
Zsp2I ATGCAT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.