Rroxscaffold_7G00160740

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
3680950 .. 3684070
3121 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00160740.1

Sequence Viewer

Length: 1281 bp
ATGGTCGCAATTTTCACATACGCTTTCGTTTCTCTCTTAACCATAATCTTCTCGTACATTTTCATGAAGAAGAACAAGGGAGGAGAAGAAGAGCTCCATGATCATGGTAATGAAAATAGGGCTCAGCTCCCTCCAGGCTCACTGGGTTGGCCTTATATCGGAGAGACTCTCCAGCTCTATTCTCAGGACCCAAACATTTTCTTCTCTGCCAGACAGAGAAGGTATGGGAAAATTTTCAAGACCCATATACTTGGGTGTCCATGTGTGATGCTGGCCAGCCCGGAGGCTGCAAAGTTTGTGTTGGTCACTCAAGCTCACTTGTTCAAGCCCACCTATCCCAAAAGCAAAGAGGGTCTGATTGGTCCCTTCGCACTATTTTTCCACCAAGGAGATTACCATATCAGACTGAGGAAGCTTGTTCAGGGATCTCTCAACCTTGATGCTATTCGGAATTTGGTGCCCCATATCGATGCCACGGCTGCCTCTCTGACCTCGGAGTCATGGGGCACCGGGAAGGTCATTAACACCTTCCATGAGATGCAGAAGGCGAGAGAGAGGCTGAGACATATTTTGGGTGACATTATCCACGAGAGAAGGGAGAAGAGATTACCTGAAAAGGATCTCTTGGGTTGTTTGCTGAGCTCAATAAACGGAGGGGAAGTTTTGAGTGATGATCAAATCGCAGACAACATAATAGGTGTGCTCTTTGCTGCTCAAGACACCACAGCCAGTGTCATGACCTGGATTATCAAGTACCTCCACGACGAGCCCAAACTTCTAGAAGCTGTCAAGGCCGAACAAAATGCAATTCGCATATCAAATGAACAAGGCAATCAACCATTGAGTTGGGCACAGACTAAAATCATGCCAATTAGTTATAAGGTTGTGTTGGAGAGTCTGCGAATGGCAAGCATAATATCATTCCTCTTTAGGGAGGCTGTGGTTGATGTGAAATACAAAGGTTACTTGATTCCAAAAGGTTGGAAGGTGATGCCTTTGTTCAGGAACATTCATCATAATCCTGAATTCTTCACCGACCCTCAGAAATTCGATCTTTCTAGATTCCAGGTTGCACCAAAGCCAAATACATTTATGCCATTCGGCATTGGAGTCCATGCTTGTCCAGGAAATGAGCTTGCTAAGCTGGAATTACTGATCATGATCCACCATTTAGTCACCAAGTTCACGTGGGAAATTGAGGGATCCCAAAGCGGGATTGAGTATAGTCCATTTCCGGTGCCTCTGAAGGGACTTCCAGTCAAATTTTGGAGATTAGAATAG

Protein Analysis

426

Amino Acids

48.41

Weight (kDa)

8.93

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 44 - 164 1.3e-09 Cytochrome P450
p450 PF00067 175 - 403 5e-51 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 879
AasI GACNNNNNNGTC 1 cut(s) 496
AccB1I GGYRCC 3 cut(s) 457, 506, 1237
AciI CCGC 1 cut(s) 1212
AclWI GGATC 5 cut(s) 433, 627, 1156, 1197, 1210
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 5 cut(s) 231, 451, 1025, 1046, 1262
AcuI CTGAAG 1 cut(s) 1265
AcvI CACGTG 1 cut(s) 1188
AfaI GTAC 2 cut(s) 56, 755
AfiI CCNNNNNNNGG 4 cut(s) 158, 931, 1212, 1247
AgsI TTSAA 2 cut(s) 238, 325
AhdI GACNNNNNGTC 1 cut(s) 1256
AjnI CCWGG 4 cut(s) 133, 740, 1065, 1123
AluBI AGCT 9 cut(s) 94, 127, 175, 314, 415, 642, 785, 1135, 1144
AluI AGCT 9 cut(s) 94, 127, 175, 314, 415, 642, 785, 1135, 1144
Alw21I GWGCWC 3 cut(s) 96, 644, 705
Alw26I GTCTC 2 cut(s) 158, 556
AlwI GGATC 5 cut(s) 433, 627, 1156, 1197, 1210
AoxI GGCC 3 cut(s) 149, 273, 792
ApeKI GCWGC 3 cut(s) 287, 479, 710
ApoI RAATTY 5 cut(s) 231, 451, 1025, 1046, 1262
Asp700I GAANNNNTTC 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 187, 362
AsuC2I CCSGG 2 cut(s) 281, 511
AsuHPI GGTGA 4 cut(s) 587, 1000, 1024, 1168
AvaII GGWCC 2 cut(s) 187, 362
BaeGI GKGCMC 3 cut(s) 462, 509, 853
BalI TGGCCA 1 cut(s) 275
BamHI GGATCC 1 cut(s) 1202
BanI GGYRCC 3 cut(s) 457, 506, 1237
BanII GRGCYC 4 cut(s) 96, 124, 644, 771
BauI CACGAG 1 cut(s) 587
BbrPI CACGTG 1 cut(s) 1188
Bbv12I GWGCWC 3 cut(s) 96, 644, 705
BbvI GCAGC 3 cut(s) 274, 466, 697
BceAI ACGGC 1 cut(s) 492
BcgI CGANNNNNNTGC 2 cut(s) 785, 819
BciT130I CCWGG 4 cut(s) 135, 742, 1067, 1125
BclI TGATCA 3 cut(s) 100, 673, 1155
BcnI CCSGG 2 cut(s) 281, 511
BcoDI GTCTC 2 cut(s) 158, 556
BfaI CTAG 2 cut(s) 779, 1059
BisI GCNGC 3 cut(s) 288, 480, 711
BlpI GCTNAGC 3 cut(s) 123, 638, 1140
BlsI GCNGC 3 cut(s) 289, 481, 712
Bme1390I CCNGG 6 cut(s) 135, 281, 511, 742, 1067, 1125
Bme18I GGWCC 2 cut(s) 187, 362
BmeRI GACNNNNNGTC 1 cut(s) 1256
BmgT120I GGNCC 2 cut(s) 187, 362
BmiI GGNNCC 6 cut(s) 189, 364, 459, 508, 1204, 1239
BmrFI CCNGG 6 cut(s) 135, 281, 511, 742, 1067, 1125
BmrI ACTGGG 1 cut(s) 152
BmsI GCATC 5 cut(s) 258, 430, 460, 528, 981
BmuI ACTGGG 1 cut(s) 152
BplI GAGNNNNNCTC 2 cut(s) 153, 185
BpmI CTGGAG 2 cut(s) 117, 155
Bpu1102I GCTNAGC 3 cut(s) 123, 638, 1140
BpuEI CTTGAG 2 cut(s) 294, 699
BpuMI CCSGG 2 cut(s) 281, 511
Bsa29I ATCGAT 1 cut(s) 468
BsaAI YACGTR 1 cut(s) 1188
BsaBI GATNNNNATC 1 cut(s) 1160
BsaJI CCNNGG 3 cut(s) 385, 474, 492
BsaWI WCCGGW 1 cut(s) 1234
BsaXI ACNNNNNCTCC 2 cut(s) 645, 675
Bsc4I CCNNNNNNNGG 4 cut(s) 158, 931, 1212, 1247
Bse1I ACTGG 3 cut(s) 147, 729, 1256
Bse8I GATNNNNATC 1 cut(s) 1160
BseBI CCWGG 4 cut(s) 135, 742, 1067, 1125
BseCI ATCGAT 1 cut(s) 468
BseDI CCNNGG 3 cut(s) 385, 474, 492
BseJI GATNNNNATC 1 cut(s) 1160
BseLI CCNNNNNNNGG 4 cut(s) 158, 931, 1212, 1247
BseMII CTCAG 6 cut(s) 137, 197, 398, 551, 629, 1055
BseNI ACTGG 3 cut(s) 147, 729, 1256
BseRI GAGGAG 1 cut(s) 96
BseSI GKGCMC 3 cut(s) 462, 509, 853
BseXI GCAGC 3 cut(s) 274, 466, 697
BshFI GGCC 3 cut(s) 151, 275, 794
BshNI GGYRCC 3 cut(s) 457, 506, 1237
BshVI ATCGAT 1 cut(s) 468
BsiHKAI GWGCWC 3 cut(s) 96, 644, 705
BsiSI CCGG 3 cut(s) 281, 510, 1235
BslFI GGGAC 2 cut(s) 348, 1263
BslI CCNNNNNNNGG 4 cut(s) 158, 931, 1212, 1247
BsmAI GTCTC 2 cut(s) 158, 556
BsmFI GGGAC 2 cut(s) 348, 1263
BsnI GGCC 3 cut(s) 151, 275, 794
Bsp1286I GDGCHC 8 cut(s) 96, 124, 462, 509, 644, 705, 771, 853
Bsp143I GATC 8 cut(s) 100, 425, 619, 673, 1051, 1155, 1161, 1202
Bsp1720I GCTNAGC 3 cut(s) 123, 638, 1140
BspACI CCGC 1 cut(s) 1212
BspANI GGCC 3 cut(s) 151, 275, 794
BspCNI CTCAG 6 cut(s) 136, 196, 399, 552, 630, 1054
BspDI ATCGAT 1 cut(s) 468
BspHI TCATGA 3 cut(s) 63, 735, 1158
BspLI GGNNCC 6 cut(s) 189, 364, 459, 508, 1204, 1239
BspPI GGATC 5 cut(s) 433, 627, 1156, 1197, 1210
BspQI GCTCTTC 1 cut(s) 84
BspT107I GGYRCC 3 cut(s) 457, 506, 1237
BsrI ACTGG 3 cut(s) 147, 729, 1256
BssECI CCNNGG 3 cut(s) 385, 474, 492
BssMI GATC 8 cut(s) 100, 425, 619, 673, 1051, 1155, 1161, 1202
BssSI CACGAG 1 cut(s) 587
BssT1I CCWWGG 1 cut(s) 385
Bst2BI CACGAG 1 cut(s) 587
Bst2UI CCWGG 4 cut(s) 135, 742, 1067, 1125
Bst6I CTCTTC 2 cut(s) 84, 596
BstBAI YACGTR 1 cut(s) 1188
BstC8I GCNNGC 4 cut(s) 273, 277, 910, 1137
BstDEI CTNAG 7 cut(s) 123, 183, 407, 560, 638, 1041, 1140
BstDSI CCRYGG 1 cut(s) 474
BstKTI GATC 8 cut(s) 103, 428, 622, 676, 1054, 1158, 1164, 1205
BstMAI GTCTC 2 cut(s) 158, 556
BstMBI GATC 8 cut(s) 100, 425, 619, 673, 1051, 1155, 1161, 1202
BstMWI GCNNNNNNNGC 3 cut(s) 479, 791, 1141
BstNI CCWGG 4 cut(s) 135, 742, 1067, 1125
BstSCI CCNGG 6 cut(s) 133, 279, 509, 740, 1065, 1123
BstSLI GKGCMC 3 cut(s) 462, 509, 853
BstV1I GCAGC 3 cut(s) 274, 466, 697
BstX2I RGATCY 3 cut(s) 425, 619, 1202
BstXI CCANNNNNNTGG 4 cut(s) 104, 251, 846, 981
BstYI RGATCY 3 cut(s) 425, 619, 1202
Bsu15I ATCGAT 1 cut(s) 468
BsuRI GGCC 3 cut(s) 151, 275, 794
BsuTUI ATCGAT 1 cut(s) 468
BtgI CCRYGG 1 cut(s) 474
BtsIMutI CAGTG 2 cut(s) 140, 736
Cac8I GCNNGC 4 cut(s) 273, 277, 910, 1137
CciI TCATGA 3 cut(s) 63, 735, 1158
Cfr13I GGNCC 2 cut(s) 187, 362
ClaI ATCGAT 1 cut(s) 468
Csp6I GTAC 2 cut(s) 55, 754
CviQI GTAC 2 cut(s) 55, 754
DdeI CTNAG 7 cut(s) 123, 183, 407, 560, 638, 1041, 1140
DpnI GATC 8 cut(s) 102, 427, 621, 675, 1053, 1157, 1163, 1204
DpnII GATC 8 cut(s) 100, 425, 619, 673, 1051, 1155, 1161, 1202
DrdI GACNNNNNNGTC 1 cut(s) 496
DriI GACNNNNNGTC 1 cut(s) 1256
DseDI GACNNNNNNGTC 1 cut(s) 496
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 2 cut(s) 84, 596
Eam1105I GACNNNNNGTC 1 cut(s) 1256
EarI CTCTTC 2 cut(s) 84, 596
Ecl136II GAGCTC 2 cut(s) 94, 642
Eco130I CCWWGG 1 cut(s) 385
Eco24I GRGCYC 4 cut(s) 96, 124, 644, 771
Eco47I GGWCC 2 cut(s) 187, 362
Eco53kI GAGCTC 2 cut(s) 94, 642
Eco57I CTGAAG 1 cut(s) 1265
Eco72I CACGTG 1 cut(s) 1188
EcoICRI GAGCTC 2 cut(s) 94, 642
EcoO109I RGGNCCY 1 cut(s) 187
EcoRI GAATTC 1 cut(s) 1025
EcoRII CCWGG 4 cut(s) 133, 740, 1065, 1123
EcoT14I CCWWGG 1 cut(s) 385
EcoT38I GRGCYC 4 cut(s) 96, 124, 644, 771
ErhI CCWWGG 1 cut(s) 385
FalI AAGNNNNNCTT 2 cut(s) 608, 640
FaqI GGGAC 2 cut(s) 348, 1263
FauI CCCGC 1 cut(s) 1205
FbaI TGATCA 3 cut(s) 100, 673, 1155
Fnu4HI GCNGC 3 cut(s) 288, 480, 711
FriOI GRGCYC 4 cut(s) 96, 124, 644, 771
Fsp4HI GCNGC 3 cut(s) 288, 480, 711
FspBI CTAG 2 cut(s) 779, 1059
GluI GCNGC 3 cut(s) 288, 480, 711
GsuI CTGGAG 2 cut(s) 117, 155
HaeIII GGCC 3 cut(s) 151, 275, 794
HapII CCGG 3 cut(s) 281, 510, 1235
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 6 cut(s) 166, 497, 895, 970, 1062, 1110
HpaII CCGG 3 cut(s) 281, 510, 1235
HphI GGTGA 4 cut(s) 587, 1000, 1024, 1168
Hpy166II GTNNAC 1 cut(s) 1185
Hpy188I TCNGA 8 cut(s) 161, 357, 404, 450, 489, 496, 1044, 1245
Hpy8I GTNNAC 1 cut(s) 1185
Hpy99I CGWCG 1 cut(s) 767
HpyAV CCTTC 8 cut(s) 213, 376, 508, 538, 538, 588, 979, 1240
HpyCH4IV ACGT 1 cut(s) 1187
HpyCH4V TGCA 4 cut(s) 290, 541, 806, 1073
HpyF10VI GCNNNNNNNGC 3 cut(s) 479, 791, 1141
HpyF3I CTNAG 7 cut(s) 123, 183, 407, 560, 638, 1041, 1140
HpySE526I ACGT 1 cut(s) 1187
Ksp22I TGATCA 3 cut(s) 100, 673, 1155
Kzo9I GATC 8 cut(s) 100, 425, 619, 673, 1051, 1155, 1161, 1202
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 2 cut(s) 99, 132
Lsp1109I GCAGC 3 cut(s) 274, 466, 697
LweI GCATC 5 cut(s) 258, 430, 460, 528, 981
MaeI CTAG 2 cut(s) 779, 1059
MaeII ACGT 1 cut(s) 1187
MaeIII GTNAC 4 cut(s) 304, 575, 962, 1174
MalI GATC 8 cut(s) 102, 427, 621, 675, 1053, 1157, 1163, 1204
MboI GATC 8 cut(s) 100, 425, 619, 673, 1051, 1155, 1161, 1202
MboII GAAGA 8 cut(s) 40, 79, 82, 98, 101, 193, 613, 1021
MflI RGATCY 3 cut(s) 425, 619, 1202
MhlI GDGCHC 8 cut(s) 96, 124, 462, 509, 644, 705, 771, 853
MlsI TGGCCA 1 cut(s) 275
MluNI TGGCCA 1 cut(s) 275
MlyI GAGTC 4 cut(s) 160, 506, 904, 1119
MmeI TCCRAC 2 cut(s) 870, 962
Mox20I TGGCCA 1 cut(s) 275
MroXI GAANNNNTTC 1 cut(s) 233
MscI TGGCCA 1 cut(s) 275
MseI TTAA 2 cut(s) 38, 522
MslI CAYNNNNRTG 4 cut(s) 62, 102, 108, 468
Msp20I TGGCCA 1 cut(s) 275
MspI CCGG 3 cut(s) 281, 510, 1235
MspR9I CCNGG 6 cut(s) 135, 281, 511, 742, 1067, 1125
MvaI CCWGG 4 cut(s) 135, 742, 1067, 1125
MwoI GCNNNNNNNGC 3 cut(s) 479, 791, 1141
NciI CCSGG 2 cut(s) 281, 511
NdeII GATC 8 cut(s) 100, 425, 619, 673, 1051, 1155, 1161, 1202
NlaIV GGNNCC 6 cut(s) 189, 364, 459, 508, 1204, 1239
NmuCI GTSAC 3 cut(s) 304, 575, 1174
PagI TCATGA 3 cut(s) 63, 735, 1158
PciSI GCTCTTC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 2 cut(s) 970, 1062
PfoI TCCNGGA 1 cut(s) 1123
PkrI GCNGC 3 cut(s) 289, 481, 712
PleI GAGTC 4 cut(s) 160, 505, 903, 1118
PmaCI CACGTG 1 cut(s) 1188
PmlI CACGTG 1 cut(s) 1188
PpsI GAGTC 4 cut(s) 160, 505, 903, 1118
Ppu21I YACGTR 1 cut(s) 1188
PpuMI RGGWCCY 1 cut(s) 187
PsiI TTATAA 1 cut(s) 879
Psp124BI GAGCTC 2 cut(s) 96, 644
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 4 cut(s) 133, 740, 1065, 1123
PspCI CACGTG 1 cut(s) 1188
PspGI CCWGG 4 cut(s) 133, 740, 1065, 1123
PspN4I GGNNCC 6 cut(s) 189, 364, 459, 508, 1204, 1239
PspPI GGNCC 2 cut(s) 187, 362
PspPPI RGGWCCY 1 cut(s) 187
PsuI RGATCY 3 cut(s) 425, 619, 1202
RsaI GTAC 2 cut(s) 56, 755
RsaNI GTAC 2 cut(s) 55, 754
RseI CAYNNNNRTG 4 cut(s) 62, 102, 108, 468
SacI GAGCTC 2 cut(s) 96, 644
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 38, 522
SatI GCNGC 3 cut(s) 288, 480, 711
Sau3AI GATC 8 cut(s) 100, 425, 619, 673, 1051, 1155, 1161, 1202
Sau96I GGNCC 2 cut(s) 187, 362
SchI GAGTC 4 cut(s) 160, 506, 904, 1119
ScrFI CCNGG 6 cut(s) 135, 281, 511, 742, 1067, 1125
SduI GDGCHC 8 cut(s) 96, 124, 462, 509, 644, 705, 771, 853
SfaNI GCATC 5 cut(s) 258, 430, 460, 528, 981
SinI GGWCC 2 cut(s) 187, 362
SmiMI CAYNNNNRTG 4 cut(s) 62, 102, 108, 468
SmlI CTYRAG 2 cut(s) 309, 714
SmoI CTYRAG 2 cut(s) 309, 714
SsiI CCGC 1 cut(s) 1212
SspMI CTAG 2 cut(s) 779, 1059
SstI GAGCTC 2 cut(s) 96, 644
StyD4I CCNGG 6 cut(s) 133, 279, 509, 740, 1065, 1123
StyI CCWWGG 1 cut(s) 385
TaiI ACGT 1 cut(s) 1190
TaqI TCGA 2 cut(s) 468, 1050
TfiI GAWTC 2 cut(s) 970, 1062
Tru1I TTAA 2 cut(s) 38, 522
Tru9I TTAA 2 cut(s) 38, 522
TscAI CASTG 2 cut(s) 147, 736
TseFI GTSAC 3 cut(s) 304, 575, 1174
TseI GCWGC 3 cut(s) 287, 479, 710
Tsp45I GTSAC 3 cut(s) 304, 575, 1174
TspDTI ATGAA 5 cut(s) 52, 80, 126, 837, 1001
TspGWI ACGGA 1 cut(s) 666
TspRI CASTG 2 cut(s) 147, 736
VpaK11BI GGWCC 2 cut(s) 187, 362
XapI RAATTY 5 cut(s) 231, 451, 1025, 1046, 1262
XbaI TCTAGA 2 cut(s) 778, 1058
XcmI CCANNNNNNNNNTGG 1 cut(s) 1263
XmnI GAANNNNTTC 1 cut(s) 233
XspI CTAG 2 cut(s) 779, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.