Rh2AG180300

Cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002224
Physical Location & Seq
Reverse (-)
17281996 .. 17286330
4335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG180300.1

Sequence Viewer

Length: 855 bp
ATGAGAAGATTAGTCCAAGAATCACTGTCCTTGGATGCTATCAAGAACTTAGTCCCGGATATTGAAGCCATTGCCATTTCTACCTTGGACTCATGGTCTGGTGGGCAAATTGTCAACACCTTTTATGAATTGAAGAAGTTCACTTTTGATGTTGCTGCATTGTTTATCTTCGGTCGCTTGAACACTCACTACAAAGAACAGCTAAAGAAAAACTATTTCACTCTAGACAAAGGTTACAATTGTTTCCCTATAAACCTACCAGGCTCTTCATACAATAAGTCGGTCTTGGCAAGGAGAAGGCTAAGCTTAATTCTCGGTGAGATAATAAAGGAGAGAAAGGAAAATAAATTGGTCGAGAAAGATCTATTGGGAAGCTTATTGAAGTTCAAGGATGAACAGGGTCAAACCTTAACACACAACCAGATCCTTGATAACATTATTGGGGTATTGTTTGCTGCTCAGGACACCACAGCTACTCTCCTGACTTGGATTCTCAAATACATGCACGATTACTCTGAACTTCTAGAAGCTATTCAGGTAGAACAGAGGGCAATTTTTGCAGCAAATGAGGGTGGAAACCAGTCGCTCAGTTGGGCTCAAACTAGAAATATGCCCCTTACCAGTAGGGCTGTAAAGGAGAGTTTGAGGATGGCAAGCATAATTTCTTTCACCTTCAGAGAAGCCGTTGAAGACGTTGAATATAAAGGTGGGAAGCAGCGGCGTCCGATGGTGGGATTCATTATGACCCATTTCCAGTACCTCAGCAAGGACTTCCGGCCAAATTTTGGAAAGAGTATTCCGGCAGCCAAGGAGCGCTGTATGATAAAAGAGCAAACTAGTGAATGCACAAATTAA

Protein Analysis

284

Amino Acids

32.5

Weight (kDa)

9.08

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 236 1.1e-23 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 785
AciI CCGC 1 cut(s) 718
AclWI GGATC 1 cut(s) 418
AcoI YGGCCR 1 cut(s) 776
AcsI RAATTY 1 cut(s) 781
AcuI CTGAAG 1 cut(s) 658
AcyI GRCGYC 1 cut(s) 721
AfaI GTAC 1 cut(s) 758
AfeI AGCGCT 1 cut(s) 815
AfiI CCNNNNNNNGG 3 cut(s) 731, 766, 785
AgsI TTSAA 7 cut(s) 65, 133, 181, 382, 388, 689, 698
AhdI GACNNNNNGTC 1 cut(s) 94
AhlI ACTAGT 1 cut(s) 836
AjnI CCWGG 1 cut(s) 259
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AluBI AGCT 5 cut(s) 202, 306, 375, 473, 530
AluI AGCT 5 cut(s) 202, 306, 375, 473, 530
AlwI GGATC 1 cut(s) 418
Aor51HI AGCGCT 1 cut(s) 815
AoxI GGCC 1 cut(s) 776
ApeKI GCWGC 5 cut(s) 155, 455, 560, 715, 803
ApoI RAATTY 1 cut(s) 781
Asp700I GAANNNNTTC 2 cut(s) 137, 531
AspLEI GCGC 1 cut(s) 816
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 329, 661
BanII GRGCYC 1 cut(s) 598
BbsI GAAGAC 1 cut(s) 696
BbvCI CCTCAGC 1 cut(s) 761
BbvI GCAGC 5 cut(s) 142, 442, 572, 727, 815
BccI CCATC 2 cut(s) 643, 721
BceAI ACGGC 1 cut(s) 668
BciT130I CCWGG 1 cut(s) 261
BcnI CCSGG 1 cut(s) 56
BcuI ACTAGT 1 cut(s) 836
BfaI CTAG 4 cut(s) 224, 524, 603, 837
BfoI RGCGCY 1 cut(s) 817
BglII AGATCT 1 cut(s) 361
BisI GCNGC 6 cut(s) 156, 456, 561, 716, 719, 804
BlpI GCTNAGC 1 cut(s) 302
BlsI GCNGC 6 cut(s) 157, 457, 562, 717, 720, 805
Bme1390I CCNGG 2 cut(s) 56, 261
BmeRI GACNNNNNGTC 1 cut(s) 94
BmrFI CCNGG 2 cut(s) 56, 261
BmsI GCATC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 696
Bpu10I CCTNAGC 2 cut(s) 459, 761
Bpu1102I GCTNAGC 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 721
BsaJI CCNNGG 3 cut(s) 30, 84, 807
Bsc4I CCNNNNNNNGG 3 cut(s) 731, 766, 785
Bse1I ACTGG 3 cut(s) 580, 621, 754
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 3 cut(s) 30, 84, 807
BseGI GGATG 3 cut(s) 40, 397, 654
BseLI CCNNNNNNNGG 3 cut(s) 731, 766, 785
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 3 cut(s) 473, 601, 775
BseNI ACTGG 3 cut(s) 580, 621, 754
BseXI GCAGC 5 cut(s) 142, 442, 572, 727, 815
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 1 cut(s) 778
BsiEI CGRYCG 1 cut(s) 175
BsiSI CCGG 3 cut(s) 56, 775, 800
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 3 cut(s) 731, 766, 785
BsmFI GGGAC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 848
BsnI GGCC 1 cut(s) 778
Bsp1286I GDGCHC 1 cut(s) 598
Bsp143I GATC 2 cut(s) 361, 423
Bsp1720I GCTNAGC 1 cut(s) 302
BspACI CCGC 1 cut(s) 718
BspANI GGCC 1 cut(s) 778
BspCNI CTCAG 3 cut(s) 472, 600, 774
BspPI GGATC 1 cut(s) 418
BspQI GCTCTTC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 69
BsrI ACTGG 3 cut(s) 580, 621, 754
BssECI CCNNGG 3 cut(s) 30, 84, 807
BssMI GATC 2 cut(s) 361, 423
BssNI GRCGYC 1 cut(s) 721
BssT1I CCWWGG 3 cut(s) 30, 84, 807
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 271
BstACI GRCGYC 1 cut(s) 721
BstAPI GCANNNNNTGC 1 cut(s) 557
BstC8I GCNNGC 1 cut(s) 655
BstDEI CTNAG 5 cut(s) 49, 302, 459, 587, 761
BstENI CCTNNNNNAGG 1 cut(s) 764
BstF5I GGATG 3 cut(s) 40, 397, 654
BstH2I RGCGCY 1 cut(s) 817
BstHHI GCGC 1 cut(s) 816
BstKTI GATC 2 cut(s) 364, 426
BstMBI GATC 2 cut(s) 361, 423
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 1 cut(s) 557
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 505
BstSCI CCNGG 2 cut(s) 54, 259
BstV1I GCAGC 5 cut(s) 142, 442, 572, 727, 815
BstV2I GAAGAC 1 cut(s) 696
BstX2I RGATCY 2 cut(s) 361, 423
BstYI RGATCY 2 cut(s) 361, 423
BsuRI GGCC 1 cut(s) 778
BtsCI GGATG 3 cut(s) 40, 397, 654
BtsIMutI CAGTG 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 655
CfoI GCGC 1 cut(s) 816
CseI GACGC 1 cut(s) 710
Csp6I GTAC 1 cut(s) 757
CviAII CATG 2 cut(s) 93, 502
CviQI GTAC 1 cut(s) 757
DdeI CTNAG 5 cut(s) 49, 302, 459, 587, 761
DpnI GATC 2 cut(s) 363, 425
DpnII GATC 2 cut(s) 361, 423
DriI GACNNNNNGTC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 776
Eam1104I CTCTTC 1 cut(s) 271
Eam1105I GACNNNNNGTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 271
Eco130I CCWWGG 3 cut(s) 30, 84, 807
Eco24I GRGCYC 1 cut(s) 598
Eco47III AGCGCT 1 cut(s) 815
Eco57I CTGAAG 1 cut(s) 658
EcoNI CCTNNNNNAGG 1 cut(s) 764
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 3 cut(s) 30, 84, 807
EcoT38I GRGCYC 1 cut(s) 598
ErhI CCWWGG 3 cut(s) 30, 84, 807
FaeI CATG 2 cut(s) 96, 505
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 1 cut(s) 38
FatI CATG 2 cut(s) 92, 501
Fnu4HI GCNGC 6 cut(s) 156, 456, 561, 716, 719, 804
FokI GGATG 3 cut(s) 47, 404, 661
FriOI GRGCYC 1 cut(s) 598
Fsp4HI GCNGC 6 cut(s) 156, 456, 561, 716, 719, 804
FspBI CTAG 4 cut(s) 224, 524, 603, 837
GlaI GCGC 1 cut(s) 815
GluI GCNGC 6 cut(s) 156, 456, 561, 716, 719, 804
HaeII RGCGCY 1 cut(s) 817
HaeIII GGCC 1 cut(s) 778
HapII CCGG 3 cut(s) 56, 775, 800
HgaI GACGC 1 cut(s) 710
HhaI GCGC 1 cut(s) 816
Hin1I GRCGYC 1 cut(s) 721
Hin1II CATG 2 cut(s) 96, 505
Hin6I GCGC 1 cut(s) 814
HinP1I GCGC 1 cut(s) 814
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HindIII AAGCTT 2 cut(s) 304, 373
HinfI GANTC 4 cut(s) 20, 89, 490, 735
HpaII CCGG 3 cut(s) 56, 775, 800
HphI GGTGA 2 cut(s) 329, 661
Hpy166II GTNNAC 2 cut(s) 115, 141
Hpy188I TCNGA 3 cut(s) 517, 677, 726
Hpy188III TCNNGA 6 cut(s) 43, 224, 355, 461, 481, 524
Hpy8I GTNNAC 2 cut(s) 115, 141
HpyAV CCTTC 2 cut(s) 291, 682
HpyCH4III ACNGT 1 cut(s) 27
HpyCH4IV ACGT 1 cut(s) 693
HpyCH4V TGCA 4 cut(s) 158, 505, 560, 846
HpyF10VI GCNNNNNNNGC 1 cut(s) 557
HpyF3I CTNAG 5 cut(s) 49, 302, 459, 587, 761
HpySE526I ACGT 1 cut(s) 693
Hsp92I GRCGYC 1 cut(s) 721
Hsp92II CATG 2 cut(s) 96, 505
HspAI GCGC 1 cut(s) 814
Kzo9I GATC 2 cut(s) 361, 423
LguI GCTCTTC 1 cut(s) 271
LmnI GCTCC 1 cut(s) 811
Lsp1109I GCAGC 5 cut(s) 142, 442, 572, 727, 815
LweI GCATC 1 cut(s) 25
MaeI CTAG 4 cut(s) 224, 524, 603, 837
MaeII ACGT 1 cut(s) 693
MaeIII GTNAC 1 cut(s) 233
MalI GATC 2 cut(s) 363, 425
MboI GATC 2 cut(s) 361, 423
MboII GAAGA 5 cut(s) 18, 145, 160, 258, 701
MfeI CAATTG 1 cut(s) 238
MflI RGATCY 2 cut(s) 361, 423
MhlI GDGCHC 1 cut(s) 598
MluCI AATT 9 cut(s) 108, 128, 238, 309, 347, 552, 660, 781, 850
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 4 cut(s) 540, 562, 639, 770
MroXI GAANNNNTTC 2 cut(s) 137, 531
MseI TTAA 3 cut(s) 308, 410, 853
MspA1I CMGCKG 1 cut(s) 718
MspI CCGG 3 cut(s) 56, 775, 800
MspR9I CCNGG 2 cut(s) 56, 261
MunI CAATTG 1 cut(s) 238
Mva1269I GAATGC 1 cut(s) 848
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 557
NciI CCSGG 1 cut(s) 56
NdeII GATC 2 cut(s) 361, 423
NlaIII CATG 2 cut(s) 96, 505
NspI RCATGY 1 cut(s) 505
PciSI GCTCTTC 1 cut(s) 271
PctI GAATGC 1 cut(s) 848
PdmI GAANNNNTTC 2 cut(s) 137, 531
PfeI GAWTC 3 cut(s) 20, 490, 735
PflMI CCANNNNNTGG 1 cut(s) 785
PfoI TCCNGGA 1 cut(s) 54
PkrI GCNGC 6 cut(s) 157, 457, 562, 717, 720, 805
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PsrI GAACNNNNNNTAC 2 cut(s) 173, 205
PsuI RGATCY 2 cut(s) 361, 423
RsaI GTAC 1 cut(s) 758
RsaNI GTAC 1 cut(s) 757
SapI GCTCTTC 1 cut(s) 271
SaqAI TTAA 3 cut(s) 308, 410, 853
SatI GCNGC 6 cut(s) 156, 456, 561, 716, 719, 804
Sau3AI GATC 2 cut(s) 361, 423
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 2 cut(s) 56, 261
SduI GDGCHC 1 cut(s) 598
SfaNI GCATC 1 cut(s) 25
SpeI ACTAGT 1 cut(s) 836
Sse9I AATT 9 cut(s) 108, 128, 238, 309, 347, 552, 660, 781, 850
SsiI CCGC 1 cut(s) 718
SspMI CTAG 4 cut(s) 224, 524, 603, 837
StyD4I CCNGG 2 cut(s) 54, 259
StyI CCWWGG 3 cut(s) 30, 84, 807
TaaI ACNGT 1 cut(s) 27
TaiI ACGT 1 cut(s) 696
TaqI TCGA 1 cut(s) 354
TaqII GACCGA 2 cut(s) 161, 271
TasI AATT 9 cut(s) 108, 128, 238, 309, 347, 552, 660, 781, 850
TauI GCSGC 1 cut(s) 721
TfiI GAWTC 3 cut(s) 20, 490, 735
Tru1I TTAA 3 cut(s) 308, 410, 853
Tru9I TTAA 3 cut(s) 308, 410, 853
TscAI CASTG 1 cut(s) 30
TseI GCWGC 5 cut(s) 155, 455, 560, 715, 803
TspDTI ATGAA 4 cut(s) 141, 258, 408, 727
TspRI CASTG 1 cut(s) 30
Van91I CCANNNNNTGG 1 cut(s) 785
XagI CCTNNNNNAGG 1 cut(s) 764
XapI RAATTY 1 cut(s) 781
XbaI TCTAGA 2 cut(s) 223, 523
XceI RCATGY 1 cut(s) 505
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XmnI GAANNNNTTC 2 cut(s) 137, 531
XspI CTAG 4 cut(s) 224, 524, 603, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.