Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002224

Physical Location & Seq

Genomic Coordinates Forward (+)

76787377 .. 76788479

Gene Structure 1103 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0573200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGACAACTTGTATACCAGCTGGAACTGGTAAATTGCATTTCAGAGTAAAGGACTTCAACGCACAAGGCTGTAGAAAGGCTTCTTGGGTCACATTTAGTGAGCTTTCATGGTCGCGTGGGGTTTCAAAGTTCTTGCAAATTCAGAGATGTAACTCCTCCCAATCTCCAATTAATGAGAGCTCAAAGCCCTTAAGAACCATCACTTCATCAAGTTTGCGAGATGGTTCCACTAAATTCTTCGATTTTACTGTTATTGGTAGTGGAGTTGCTGGCCTCCGCTATGCCCTGGAAGTGGCAAAACATGGATCTGTTGCTGTCATTACCAAGGCTGAGCCTCATGAAAGTAATACAAATTATGCTCAAGGTGGTGTTGGTGCTGTACTGTGCCCTTCGGATTCTGTGGAGAGTCATGTCCAGGACACCATTGTAGCAGGAGCTTATCTATGTGATGAGGAGACTGTTAGAGTATGTTATAGAACCAATTGTAAACAGGATTGGTGGATCTGGTATGGATCTCAGAAGCAAAGCAAGGGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010295 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

179

Amino Acids

19.65

Weight (kDa)

8.99

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_2	PF00890	82 - 159	4.9e-17	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19270 AT3G19270
fragaria_vesca	FvH4_2g06010 FvH4_2g34420
malus_domestica	MD02G1171600.v1.1 MD05G1081400.v1.1 MD08G1101400.v1.1 MD15G1082600.v1.1 MD15G1283400.v1.1
prunus_persica	Prupe.1G435300_v2.0.a1 Prupe.7G133800_v2.0.a1 Prupe.8G125800_v2.0.a1
pyrus_communis	pycom02g13830 pycom05g07510 pycom08g08190 pycom15g07740
rosa_chinensis	RchiOBHm_Chr2g0105591 RchiOBHm_Chr6g0257401 RchiOBHm_Chr6g0307951
rosa_laevigata	RLG00000010684 RLG00000014690 RLG00000017443
rosa_multiflora	Rmu_sc0000820.1_g000025 Rmu_sc0003252.1_g000022
rosa_roxburghii	Rroxscaffold_2G00138090 Rroxscaffold_7G00160740 Rroxscaffold_7G00208630
rosa_rugosa	Rorug02G0128400 Rorug02G0128500 Rorug05G0573200 Rorug06G0362000
rosa_samantha	Rh2AG180300 Rh2CG184500 Rh2DG186100 Rh6AG090500 Rh6AG471000 Rh6BG482000 Rh6CG078300 Rh6CG487400 Rh6DG074100 Rh6DG473500
rosa_wichuraiana	Rw6G007900 Rw6G041130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	13
AccII	CGCG	1 cut(s)	115
AciI	CCGC	1 cut(s)	277
AclWI	GGATC	3 cut(s)	313, 509, 520
AcsI	RAATTY	2 cut(s)	138, 233
AfaI	GTAC	1 cut(s)	381
AfiI	CCNNNNNNNGG	1 cut(s)	292
AflII	CTTAAG	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	58, 126
AjnI	CCWGG	2 cut(s)	285, 414
AjuI	GAANNNNNNNTTGG	2 cut(s)	67, 99
AluBI	AGCT	4 cut(s)	20, 103, 180, 437
AluI	AGCT	4 cut(s)	20, 103, 180, 437
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	449
AlwI	GGATC	3 cut(s)	313, 509, 520
AoxI	GGCC	1 cut(s)	271
ApoI	RAATTY	2 cut(s)	138, 233
AseI	ATTAAT	1 cut(s)	171
Asp700I	GAANNNNTTC	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	182
BarI	GAAGNNNNNNTAC	2 cut(s)	64, 96
Bbv12I	GWGCWC	1 cut(s)	182
BccI	CCATC	2 cut(s)	206, 215
BciT130I	CCWGG	2 cut(s)	287, 416
BcoDI	GTCTC	1 cut(s)	449
BfmI	CTRYAG	1 cut(s)	70
BfrI	CTTAAG	1 cut(s)	190
BlpI	GCTNAGC	1 cut(s)	330
Bme1390I	CCNGG	2 cut(s)	287, 416
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	2 cut(s)	287, 416
Bpu1102I	GCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	285, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	2 cut(s)	287, 416
BseDI	CCNNGG	2 cut(s)	285, 324
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMII	CTCAG	2 cut(s)	321, 530
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	2 cut(s)	145, 467
BseSI	GKGCMC	1 cut(s)	389
Bsh1236I	CGCG	1 cut(s)	115
BshFI	GGCC	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	1 cut(s)	449
BsnI	GGCC	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	182, 389
Bsp143I	GATC	3 cut(s)	305, 501, 512
Bsp1720I	GCTNAGC	1 cut(s)	330
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	2 cut(s)	322, 529
BspFNI	CGCG	1 cut(s)	115
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	3 cut(s)	313, 509, 520
BspTI	CTTAAG	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	285, 324
BssMI	GATC	3 cut(s)	305, 501, 512
BssNAI	GTATAC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	324
Bst1107I	GTATAC	1 cut(s)	14
Bst2UI	CCWGG	2 cut(s)	287, 416
Bst4CI	ACNGT	3 cut(s)	250, 384, 460
BstAFI	CTTAAG	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	2 cut(s)	330, 516
BstFNI	CGCG	1 cut(s)	115
BstKTI	GATC	3 cut(s)	308, 504, 515
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	3 cut(s)	305, 501, 512
BstNI	CCWGG	2 cut(s)	287, 416
BstSCI	CCNGG	2 cut(s)	285, 414
BstSFI	CTRYAG	1 cut(s)	70
BstSLI	GKGCMC	1 cut(s)	389
BstUI	CGCG	1 cut(s)	115
BstX2I	RGATCY	3 cut(s)	305, 501, 512
BstYI	RGATCY	3 cut(s)	305, 501, 512
BstZ17I	GTATAC	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	271
CciI	TCATGA	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	380
CviAII	CATG	4 cut(s)	108, 302, 338, 410
CviQI	GTAC	1 cut(s)	380
DdeI	CTNAG	2 cut(s)	330, 516
DpnI	GATC	3 cut(s)	307, 503, 514
DpnII	GATC	3 cut(s)	305, 501, 512
Ecl136II	GAGCTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	180
EcoICRI	GAGCTC	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	285, 414
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	4 cut(s)	111, 305, 341, 413
FatI	CATG	4 cut(s)	107, 301, 337, 409
FblI	GTMKAC	1 cut(s)	13
FriOI	GRGCYC	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	273
Hin1II	CATG	4 cut(s)	111, 305, 341, 413
HinfI	GANTC	2 cut(s)	395, 406
Hpy166II	GTNNAC	2 cut(s)	14, 488
Hpy188I	TCNGA	4 cut(s)	44, 144, 394, 519
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	2 cut(s)	14, 488
HpyAV	CCTTC	1 cut(s)	399
HpyCH4III	ACNGT	3 cut(s)	250, 384, 460
HpyCH4V	TGCA	2 cut(s)	37, 136
HpyF3I	CTNAG	2 cut(s)	330, 516
Hsp92II	CATG	4 cut(s)	111, 305, 341, 413
Kzo9I	GATC	3 cut(s)	305, 501, 512
LmnI	GCTCC	1 cut(s)	434
MaeIII	GTNAC	2 cut(s)	88, 149
MalI	GATC	3 cut(s)	307, 503, 514
MboI	GATC	3 cut(s)	305, 501, 512
MboII	GAAGA	1 cut(s)	229
MfeI	CAATTG	1 cut(s)	481
MflI	RGATCY	3 cut(s)	305, 501, 512
MhlI	GDGCHC	2 cut(s)	182, 389
MluCI	AATT	6 cut(s)	32, 138, 168, 233, 352, 481
MlyI	GAGTC	1 cut(s)	415
MnlI	CCTC	4 cut(s)	166, 284, 345, 445
MroXI	GAANNNNTTC	1 cut(s)	79
MseI	TTAA	2 cut(s)	171, 191
MspA1I	CMGCKG	1 cut(s)	20
MspCI	CTTAAG	1 cut(s)	190
MspR9I	CCNGG	2 cut(s)	287, 416
MunI	CAATTG	1 cut(s)	481
MvaI	CCWGG	2 cut(s)	287, 416
MvnI	CGCG	1 cut(s)	115
NdeII	GATC	3 cut(s)	305, 501, 512
NlaIII	CATG	4 cut(s)	111, 305, 341, 413
NlaIV	GGNNCC	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	88
PagI	TCATGA	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	395
PfoI	TCCNGGA	1 cut(s)	414
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
PshBI	ATTAAT	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	285, 414
PspGI	CCWGG	2 cut(s)	285, 414
PspN4I	GGNNCC	1 cut(s)	226
PsuI	RGATCY	3 cut(s)	305, 501, 512
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	381
RsaNI	GTAC	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	171, 191
Sau3AI	GATC	3 cut(s)	305, 501, 512
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	2 cut(s)	287, 416
SduI	GDGCHC	2 cut(s)	182, 389
SetI	ASST	5 cut(s)	22, 105, 182, 367, 439
SfcI	CTRYAG	1 cut(s)	70
SmlI	CTYRAG	2 cut(s)	190, 360
SmoI	CTYRAG	2 cut(s)	190, 360
Sse9I	AATT	6 cut(s)	32, 138, 168, 233, 352, 481
SsiI	CCGC	1 cut(s)	277
SstI	GAGCTC	1 cut(s)	182
StyD4I	CCNGG	2 cut(s)	285, 414
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	3 cut(s)	250, 384, 460
TaqI	TCGA	1 cut(s)	240
TasI	AATT	6 cut(s)	32, 138, 168, 233, 352, 481
TatI	WGTACW	1 cut(s)	379
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	2 cut(s)	171, 191
Tru9I	TTAA	2 cut(s)	171, 191
TseFI	GTSAC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	3 cut(s)	96, 195, 354
Vha464I	CTTAAG	1 cut(s)	190
VspI	ATTAAT	1 cut(s)	171
XapI	RAATTY	2 cut(s)	138, 233
XmiI	GTMKAC	1 cut(s)	13
XmnI	GAANNNNTTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.