Rh6CG078300

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002224
Physical Location & Seq
Forward (+)
8339832 .. 8343441
3610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG078300.1

Sequence Viewer

Length: 1164 bp
ATGGCCTTGCATAGGAGAGACTCTACAAATGTACTCTATGGATCCAAACAAATTCTTTGCCACAAAGCAGAAAAGGTTTCTAATCAATTAGCAACCTCTGAATCCAAAATTCATGTTTCTATCGCATATTGCATGGATTTGATCCAACTTGTTCTGGTTTACTTGTTCATCAGGTATGGAGAGATATTCAAAACCCACATACTTGGCTGTCCTTGTGTCATGCTGGCAAGCCCTGAGGCCACAAAGTTTGTGTTGGTGACTCATGCTCACCTCTTCAAGCCCACATACCCGAAAAGCAAGGAGAAGCTGATTGGCCCTTCTGCTTTGTTCTTTCACCAGGGAGATTACCACAGCAGCCTTAAGAAACTCATTCAGAGCTCTCTGTCTCCGAACCCCAATACTATGCAGAAACTGGTTCCTGACATTGAAGCCTTAGCCATTTCTGCCTTGGAATCATGGGCTGCAGCCGGAACTGTCATCAACACCTATCATGAAATGAAGAAGTTCGTGTTTGATGTCGGTTTTCTTGCCATTTTTGGCCGGCTGGATGATAGTTATAGAGAGAAGCTCAAGGAGAGCTACCACATCGTAGACGCGGGTTACAATTCGTTTCCAACAAATATACCAGGCACTGCATATCAGAAAGCTCTCTTAGCGAGGAAAAGGCTTAGTCAGATTCTGAGGCAGATAATTTGTGAGAGGAAGGAAAAGAAAATACTGCAGAAAGATCTCTTGGGTGATCTGCTGAATTTTCAAAATGAAAAGGGGCAAAACTTAACTGAGGATCAAATTTCCGATAACATCATTGGAGTACTGTTTGCTGCCCAAGACACTACAGCCAGTGTTTTAACATGGATTCTCAAGTACCTCCATGACAACCAAAACATTCTTGAAGCTGTGAAGGCCGAGCAGAAGGCAATATATGATGCAAATGATGGGTATAAGAGGCCATTGACTTGGGCACAAATCAGAAATATGCCACTTACACATAGAGTTATATTAGAGAGCTTGAGGATGGCAAGTATTATTTCTTTTGCATTTAGGGAAGCTGTGGTTGATGTAGAATACAAAGGTGAGTGCTCAAACTCAATTTATGTGTCTTCTAGGGAGCATTCAAAAGAGTTTATTCCAATATGTTTAATCAATATTTATCCAAAAAAATAA

Protein Analysis

387

Amino Acids

43.96

Weight (kDa)

8.93

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 47 - 358 1.2e-36 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 591
AccII CGCG 1 cut(s) 596
AciI CCGC 1 cut(s) 596
AclWI GGATC 4 cut(s) 36, 49, 136, 792
AcoI YGGCCR 1 cut(s) 538
AcsI RAATTY 4 cut(s) 51, 108, 748, 789
AfaI GTAC 3 cut(s) 33, 813, 866
AfiI CCNNNNNNNGG 1 cut(s) 12
AflII CTTAAG 1 cut(s) 359
AgsI TTSAA 6 cut(s) 190, 277, 428, 755, 893, 1116
AjnI CCWGG 2 cut(s) 336, 625
AjuI GAANNNNNNNTTGG 2 cut(s) 716, 748
AluBI AGCT 8 cut(s) 307, 378, 568, 579, 647, 896, 1008, 1049
AluI AGCT 8 cut(s) 307, 378, 568, 579, 647, 896, 1008, 1049
Alw21I GWGCWC 2 cut(s) 380, 1082
Alw26I GTCTC 2 cut(s) 12, 390
AlwI GGATC 4 cut(s) 36, 49, 136, 792
AlwNI CAGNNNCTG 3 cut(s) 412, 632, 679
AoxI GGCC 6 cut(s) 3, 237, 313, 538, 903, 947
ApeKI GCWGC 4 cut(s) 354, 461, 464, 821
ApoI RAATTY 4 cut(s) 51, 108, 748, 789
Asp700I GAANNNNTTC 1 cut(s) 503
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 5 cut(s) 260, 268, 326, 749, 1085
AxyI CCTNAGG 1 cut(s) 234
BaeGI GKGCMC 1 cut(s) 964
BamHI GGATCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 1092
Bbv12I GWGCWC 2 cut(s) 380, 1082
BbvI GCAGC 4 cut(s) 366, 448, 476, 808
BccI CCATC 2 cut(s) 929, 1009
BciT130I CCWGG 2 cut(s) 338, 627
BcoDI GTCTC 2 cut(s) 12, 390
BfaI CTAG 1 cut(s) 1104
BfmI CTRYAG 3 cut(s) 462, 719, 834
BfrI CTTAAG 1 cut(s) 359
BglII AGATCT 1 cut(s) 727
BisI GCNGC 4 cut(s) 355, 462, 465, 822
BlsI GCNGC 4 cut(s) 356, 463, 466, 823
BmcAI AGTACT 1 cut(s) 813
Bme1390I CCNGG 2 cut(s) 338, 627
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 2 cut(s) 43, 417
BmrFI CCNGG 2 cut(s) 338, 627
BmsI GCATC 1 cut(s) 916
BpiI GAAGAC 1 cut(s) 1092
BplI GAGNNNNNCTC 2 cut(s) 552, 584
Bpu10I CCTNAGC 1 cut(s) 433
BpuEI CTTGAG 3 cut(s) 554, 845, 1030
BsaJI CCNNGG 2 cut(s) 337, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse118I RCCGGY 1 cut(s) 540
Bse1I ACTGG 2 cut(s) 417, 840
Bse21I CCTNAGG 1 cut(s) 234
BseBI CCWGG 2 cut(s) 338, 627
BseDI CCNNGG 2 cut(s) 337, 447
BseGI GGATG 2 cut(s) 553, 1020
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 3 cut(s) 225, 671, 771
BseNI ACTGG 2 cut(s) 417, 840
BseSI GKGCMC 1 cut(s) 964
BseXI GCAGC 4 cut(s) 366, 448, 476, 808
Bsh1236I CGCG 1 cut(s) 596
BshFI GGCC 6 cut(s) 5, 239, 315, 540, 905, 949
BsiHKAI GWGCWC 2 cut(s) 380, 1082
BsiSI CCGG 2 cut(s) 468, 541
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 2 cut(s) 12, 390
BsmI GAATGC 1 cut(s) 1111
BsnI GGCC 6 cut(s) 5, 239, 315, 540, 905, 949
Bsp1286I GDGCHC 3 cut(s) 380, 964, 1082
Bsp143I GATC 5 cut(s) 41, 141, 727, 739, 784
BspACI CCGC 1 cut(s) 596
BspANI GGCC 6 cut(s) 5, 239, 315, 540, 905, 949
BspCNI CTCAG 3 cut(s) 226, 672, 772
BspFNI CGCG 1 cut(s) 596
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 2 cut(s) 43, 417
BspMAI CTGCAG 2 cut(s) 466, 723
BspPI GGATC 4 cut(s) 36, 49, 136, 792
BspTI CTTAAG 1 cut(s) 359
BsrFI RCCGGY 1 cut(s) 540
BsrI ACTGG 2 cut(s) 417, 840
BssAI RCCGGY 1 cut(s) 540
BssECI CCNNGG 2 cut(s) 337, 447
BssMI GATC 5 cut(s) 41, 141, 727, 739, 784
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 2 cut(s) 338, 627
Bst4CI ACNGT 2 cut(s) 475, 816
Bst6I CTCTTC 1 cut(s) 278
BstAFI CTTAAG 1 cut(s) 359
BstC8I GCNNGC 3 cut(s) 225, 229, 542
BstDEI CTNAG 6 cut(s) 234, 433, 652, 668, 680, 780
BstENI CCTNNNNNAGG 1 cut(s) 10
BstF5I GGATG 2 cut(s) 553, 1020
BstFNI CGCG 1 cut(s) 596
BstKTI GATC 5 cut(s) 44, 144, 730, 742, 787
BstMAI GTCTC 2 cut(s) 12, 390
BstMBI GATC 5 cut(s) 41, 141, 727, 739, 784
BstMWI GCNNNNNNNGC 3 cut(s) 443, 653, 902
BstNI CCWGG 2 cut(s) 338, 627
BstSCI CCNGG 2 cut(s) 336, 625
BstSFI CTRYAG 3 cut(s) 462, 719, 834
BstSLI GKGCMC 1 cut(s) 964
BstUI CGCG 1 cut(s) 596
BstV1I GCAGC 4 cut(s) 366, 448, 476, 808
BstV2I GAAGAC 1 cut(s) 1092
BstX2I RGATCY 2 cut(s) 41, 727
BstXI CCANNNNNNTGG 2 cut(s) 203, 957
BstYI RGATCY 2 cut(s) 41, 727
Bsu36I CCTNAGG 1 cut(s) 234
BsuRI GGCC 6 cut(s) 5, 239, 315, 540, 905, 949
BtsCI GGATG 2 cut(s) 553, 1020
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 2 cut(s) 630, 847
Cac8I GCNNGC 3 cut(s) 225, 229, 542
CaiI CAGNNNCTG 3 cut(s) 412, 632, 679
CciI TCATGA 1 cut(s) 490
Cfr10I RCCGGY 1 cut(s) 540
Cfr13I GGNCC 1 cut(s) 314
CseI GACGC 1 cut(s) 602
Csp6I GTAC 3 cut(s) 32, 812, 865
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviAII CATG 8 cut(s) 113, 133, 220, 263, 456, 491, 852, 872
CviQI GTAC 3 cut(s) 32, 812, 865
DdeI CTNAG 6 cut(s) 234, 433, 652, 668, 680, 780
DpnI GATC 5 cut(s) 43, 143, 729, 741, 786
DpnII GATC 5 cut(s) 41, 141, 727, 739, 784
EaeI YGGCCR 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Ecl136II GAGCTC 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 380
Eco53kI GAGCTC 1 cut(s) 378
Eco81I CCTNAGG 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 378
EcoNI CCTNNNNNAGG 1 cut(s) 10
EcoRII CCWGG 2 cut(s) 336, 625
EcoT14I CCWWGG 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 8 cut(s) 116, 136, 223, 266, 459, 494, 855, 875
FatI CATG 8 cut(s) 112, 132, 219, 262, 455, 490, 851, 871
FauI CCCGC 1 cut(s) 589
FblI GTMKAC 1 cut(s) 591
Fnu4HI GCNGC 4 cut(s) 355, 462, 465, 822
FokI GGATG 2 cut(s) 560, 1027
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 4 cut(s) 355, 462, 465, 822
FspBI CTAG 1 cut(s) 1104
GluI GCNGC 4 cut(s) 355, 462, 465, 822
HaeIII GGCC 6 cut(s) 5, 239, 315, 540, 905, 949
HapII CCGG 2 cut(s) 468, 541
HgaI GACGC 1 cut(s) 602
Hin1II CATG 8 cut(s) 116, 136, 223, 266, 459, 494, 855, 875
HinfI GANTC 6 cut(s) 20, 101, 259, 452, 676, 856
HpaII CCGG 2 cut(s) 468, 541
HphI GGTGA 5 cut(s) 260, 268, 326, 749, 1085
Hpy166II GTNNAC 2 cut(s) 160, 592
Hpy188I TCNGA 8 cut(s) 100, 375, 390, 642, 675, 681, 796, 971
Hpy188III TCNNGA 3 cut(s) 419, 491, 890
Hpy8I GTNNAC 2 cut(s) 160, 592
HpyAV CCTTC 4 cut(s) 327, 697, 895, 907
HpyCH4III ACNGT 2 cut(s) 475, 816
HpyCH4V TGCA 8 cut(s) 10, 132, 406, 464, 635, 721, 929, 1037
HpyF10VI GCNNNNNNNGC 3 cut(s) 443, 653, 902
HpyF3I CTNAG 6 cut(s) 234, 433, 652, 668, 680, 780
Hsp92II CATG 8 cut(s) 116, 136, 223, 266, 459, 494, 855, 875
KroI GCCGGC 1 cut(s) 540
KroNI GCCGGC 1 cut(s) 542
Kzo9I GATC 5 cut(s) 41, 141, 727, 739, 784
LmnI GCTCC 1 cut(s) 1108
Lsp1109I GCAGC 4 cut(s) 366, 448, 476, 808
LweI GCATC 1 cut(s) 916
MaeI CTAG 1 cut(s) 1104
MaeIII GTNAC 2 cut(s) 256, 599
MalI GATC 5 cut(s) 43, 143, 729, 741, 786
MboI GATC 5 cut(s) 41, 141, 727, 739, 784
MboII GAAGA 3 cut(s) 265, 511, 1092
MflI RGATCY 2 cut(s) 41, 727
MhlI GDGCHC 3 cut(s) 380, 964, 1082
MluCI AATT 8 cut(s) 51, 86, 108, 604, 690, 748, 789, 1089
MlyI GAGTC 2 cut(s) 14, 253
MmeI TCCRAC 2 cut(s) 169, 638
MroNI GCCGGC 1 cut(s) 540
MroXI GAANNNNTTC 1 cut(s) 503
MseI TTAA 4 cut(s) 360, 776, 848, 1139
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 2 cut(s) 468, 541
MspR9I CCNGG 2 cut(s) 338, 627
Mva1269I GAATGC 1 cut(s) 1111
MvaI CCWGG 2 cut(s) 338, 627
MvnI CGCG 1 cut(s) 596
MwoI GCNNNNNNNGC 3 cut(s) 443, 653, 902
NaeI GCCGGC 1 cut(s) 542
NdeII GATC 5 cut(s) 41, 141, 727, 739, 784
NgoMIV GCCGGC 1 cut(s) 540
NlaIII CATG 8 cut(s) 116, 136, 223, 266, 459, 494, 855, 875
NlaIV GGNNCC 2 cut(s) 43, 417
NmeAIII GCCGAG 1 cut(s) 931
NmuCI GTSAC 1 cut(s) 256
PagI TCATGA 1 cut(s) 490
PctI GAATGC 1 cut(s) 1111
PdiI GCCGGC 1 cut(s) 542
PdmI GAANNNNTTC 1 cut(s) 503
PfeI GAWTC 4 cut(s) 101, 452, 676, 856
PkrI GCNGC 4 cut(s) 356, 463, 466, 823
PleI GAGTC 2 cut(s) 14, 253
PpsI GAGTC 2 cut(s) 14, 253
Psp124BI GAGCTC 1 cut(s) 380
Psp6I CCWGG 2 cut(s) 336, 625
PspGI CCWGG 2 cut(s) 336, 625
PspN4I GGNNCC 2 cut(s) 43, 417
PspPI GGNCC 1 cut(s) 314
PstI CTGCAG 2 cut(s) 466, 723
PstNI CAGNNNCTG 3 cut(s) 412, 632, 679
PsuI RGATCY 2 cut(s) 41, 727
RsaI GTAC 3 cut(s) 33, 813, 866
RsaNI GTAC 3 cut(s) 32, 812, 865
SacI GAGCTC 1 cut(s) 380
SaqAI TTAA 4 cut(s) 360, 776, 848, 1139
SatI GCNGC 4 cut(s) 355, 462, 465, 822
Sau3AI GATC 5 cut(s) 41, 141, 727, 739, 784
Sau96I GGNCC 1 cut(s) 314
ScaI AGTACT 1 cut(s) 813
SchI GAGTC 2 cut(s) 14, 253
ScrFI CCNGG 2 cut(s) 338, 627
SduI GDGCHC 3 cut(s) 380, 964, 1082
SfaNI GCATC 1 cut(s) 916
SfcI CTRYAG 3 cut(s) 462, 719, 834
SmlI CTYRAG 4 cut(s) 359, 569, 860, 1009
SmoI CTYRAG 4 cut(s) 359, 569, 860, 1009
Sse9I AATT 8 cut(s) 51, 86, 108, 604, 690, 748, 789, 1089
SsiI CCGC 1 cut(s) 596
SspI AATATT 1 cut(s) 1147
SspMI CTAG 1 cut(s) 1104
SstI GAGCTC 1 cut(s) 380
StyD4I CCNGG 2 cut(s) 336, 625
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 2 cut(s) 475, 816
TasI AATT 8 cut(s) 51, 86, 108, 604, 690, 748, 789, 1089
TatI WGTACW 2 cut(s) 31, 811
TfiI GAWTC 4 cut(s) 101, 452, 676, 856
Tru1I TTAA 4 cut(s) 360, 776, 848, 1139
Tru9I TTAA 4 cut(s) 360, 776, 848, 1139
TscAI CASTG 2 cut(s) 637, 847
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 4 cut(s) 354, 461, 464, 821
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 5 cut(s) 101, 157, 507, 512, 774
TspRI CASTG 2 cut(s) 637, 847
Vha464I CTTAAG 1 cut(s) 359
XagI CCTNNNNNAGG 1 cut(s) 10
XapI RAATTY 4 cut(s) 51, 108, 748, 789
XcmI CCANNNNNNNNNTGG 1 cut(s) 445
XmiI GTMKAC 1 cut(s) 591
XmnI GAANNNNTTC 1 cut(s) 503
XspI CTAG 1 cut(s) 1104
ZrmI AGTACT 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.