Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000820.1

Orthogroup ID

OG0002224

Physical Location & Seq

Genomic Coordinates Reverse (-)

103942 .. 105966

Gene Structure 2025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000820.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atgttggcaagccctgaggccacaaagtttgtgctggtgactcatgctcacctcttcaagcccacatacccgaagagcaaggagaagctgattggcccttctgctttgttctttcaccagggagattaccacagcagccttaagaaactcattcagagctctctgtctccaaaccccaatactatgcagaaactggtacctgacattcaagccttagccatttctgccttggaatcatgggctgcagccggaactgtcatcaacacctatcatgaaatgaagaagttcgtgtttgatgtcggttttcttgccatttttggccggctggatgatagttatagagagaagctcaaggagaactaccacatcgtagacgcgggttacaattcttttccaacaaatataccaggcactgcatatcagagagctctcttggcgaggaaaaggcttagtcagattctgaggcagataatttgtgagaggaaggaaaagaaaatactgcagaaagatctcttgggtgatctgctgaattttcaaaatgaaaaggggcaaaacttaactgaggatcaaatttccgataacatcattggagtactgtttgctgcccaagacactacagccagtgttttaacatggattctcaagtacgtccatgacaaccaaaacattcttgaagctgtgaaggccgagcagaaggcaatatatgatgcaaatgatgggtataagaggccattgacttgggcacaaatcagaaatatgccacttacacatagagttatattagagagcttgaggatggcaagtattatttctttcgcatttagggaagctgtggttgatgtagaatacaaaggatatctcataccaaagggttggaaggtgatgccgttgtttaggaacatacatcacaatcctgaattattctctggtcctcaaaattttgatccatctaggtttgaggttgctccaaaggcttatactttcataccatttgggaaaggagtacatgcttgtcctggaaatgagctagccaaactggagatgctcattttgatccatcatcttgtgactaatttcaggtgggaagtagtgggatcacaaaaagggattcagtatggcccatttccagttcctcagcatggactaccggccagatttgtgaaagaacaagttaatccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010295 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

393

Amino Acids

44.62

Weight (kDa)

9.25

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19270 AT3G19270
fragaria_vesca	FvH4_2g06010 FvH4_2g34420
malus_domestica	MD02G1171600.v1.1 MD05G1081400.v1.1 MD08G1101400.v1.1 MD15G1082600.v1.1 MD15G1283400.v1.1
prunus_persica	Prupe.1G435300_v2.0.a1 Prupe.7G133800_v2.0.a1 Prupe.8G125800_v2.0.a1
pyrus_communis	pycom02g13830 pycom05g07510 pycom08g08190 pycom15g07740
rosa_chinensis	RchiOBHm_Chr2g0105591 RchiOBHm_Chr6g0257401 RchiOBHm_Chr6g0307951
rosa_laevigata	RLG00000010684 RLG00000014690 RLG00000017443
rosa_multiflora	Rmu_sc0000820.1_g000025 Rmu_sc0003252.1_g000022
rosa_roxburghii	Rroxscaffold_2G00138090 Rroxscaffold_7G00160740 Rroxscaffold_7G00208630
rosa_rugosa	Rorug02G0128400 Rorug02G0128500 Rorug05G0573200 Rorug06G0362000
rosa_samantha	Rh2AG180300 Rh2CG184500 Rh2DG186100 Rh6AG090500 Rh6AG471000 Rh6BG482000 Rh6CG078300 Rh6CG487400 Rh6DG074100 Rh6DG473500
rosa_wichuraiana	Rw6G007900 Rw6G041130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	372
AccII	CGCG	1 cut(s)	377
AciI	CCGC	1 cut(s)	377
AclWI	GGATC	4 cut(s)	573, 938, 1048, 1102
AcoI	YGGCCR	2 cut(s)	319, 1149
AcsI	RAATTY	3 cut(s)	529, 570, 937
AfaI	GTAC	4 cut(s)	198, 594, 647, 1005
AfiI	CCNNNNNNNGG	1 cut(s)	1139
AflII	CTTAAG	1 cut(s)	140
AgsI	TTSAA	4 cut(s)	58, 209, 536, 674
AjnI	CCWGG	3 cut(s)	117, 406, 1015
AjuI	GAANNNNNNNTTGG	2 cut(s)	497, 529
AluBI	AGCT	8 cut(s)	88, 159, 349, 428, 677, 789, 830, 1027
AluI	AGCT	8 cut(s)	88, 159, 349, 428, 677, 789, 830, 1027
Alw21I	GWGCWC	2 cut(s)	161, 430
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	4 cut(s)	573, 938, 1048, 1102
AlwNI	CAGNNNCTG	3 cut(s)	193, 413, 460
AoxI	GGCC	7 cut(s)	18, 94, 319, 684, 728, 1117, 1149
ApeKI	GCWGC	4 cut(s)	135, 242, 245, 602
ApoI	RAATTY	3 cut(s)	529, 570, 937
Asp700I	GAANNNNTTC	1 cut(s)	284
Asp718I	GGTACC	1 cut(s)	196
AspS9I	GGNCC	3 cut(s)	95, 929, 1118
AsuHPI	GGTGA	5 cut(s)	41, 49, 107, 530, 892
AsuNHI	GCTAGC	1 cut(s)	1027
AvaII	GGWCC	1 cut(s)	929
AxyI	CCTNAGG	1 cut(s)	15
BaeGI	GKGCMC	1 cut(s)	745
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	2 cut(s)	161, 430
Bbv12I	GWGCWC	2 cut(s)	161, 430
BbvCI	CCTCAGC	1 cut(s)	1134
BbvI	GCAGC	4 cut(s)	147, 229, 257, 589
BccI	CCATC	4 cut(s)	710, 790, 955, 1065
BceAI	ACGGC	1 cut(s)	871
BciT130I	CCWGG	3 cut(s)	119, 408, 1017
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	2 cut(s)	951, 1028
BfmI	CTRYAG	3 cut(s)	243, 500, 615
BfrI	CTTAAG	1 cut(s)	140
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	4 cut(s)	136, 243, 246, 603
BlsI	GCNGC	4 cut(s)	137, 244, 247, 604
BmcAI	AGTACT	1 cut(s)	594
Bme1390I	CCNGG	3 cut(s)	119, 408, 1017
Bme18I	GGWCC	1 cut(s)	929
BmgT120I	GGNCC	3 cut(s)	95, 929, 1118
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	3 cut(s)	119, 408, 1017
BmsI	GCATC	3 cut(s)	697, 873, 1032
BmtI	GCTAGC	1 cut(s)	1031
BplI	GAGNNNNNCTC	2 cut(s)	333, 365
BpmI	CTGGAG	1 cut(s)	1058
Bpu10I	CCTNAGC	2 cut(s)	214, 1134
BpuEI	CTTGAG	3 cut(s)	335, 626, 811
BsaJI	CCNNGG	2 cut(s)	118, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	1139
Bse118I	RCCGGY	2 cut(s)	321, 1147
Bse1I	ACTGG	4 cut(s)	198, 621, 1041, 1127
Bse21I	CCTNAGG	1 cut(s)	15
BseBI	CCWGG	3 cut(s)	119, 408, 1017
BseDI	CCNNGG	2 cut(s)	118, 228
BseGI	GGATG	2 cut(s)	334, 801
BseLI	CCNNNNNNNGG	1 cut(s)	1139
BseMII	CTCAG	4 cut(s)	6, 452, 552, 1148
BseNI	ACTGG	4 cut(s)	198, 621, 1041, 1127
BseSI	GKGCMC	1 cut(s)	745
BseXI	GCAGC	4 cut(s)	147, 229, 257, 589
Bsh1236I	CGCG	1 cut(s)	377
BshFI	GGCC	7 cut(s)	20, 96, 321, 686, 730, 1119, 1151
BshNI	GGYRCC	1 cut(s)	196
BsiHKAI	GWGCWC	2 cut(s)	161, 430
BsiSI	CCGG	3 cut(s)	249, 322, 1148
BslI	CCNNNNNNNGG	1 cut(s)	1139
BsmAI	GTCTC	1 cut(s)	171
BsnI	GGCC	7 cut(s)	20, 96, 321, 686, 730, 1119, 1151
Bsp1286I	GDGCHC	3 cut(s)	161, 430, 745
Bsp143I	GATC	6 cut(s)	508, 520, 565, 943, 1053, 1094
BspACI	CCGC	1 cut(s)	377
BspANI	GGCC	7 cut(s)	20, 96, 321, 686, 730, 1119, 1151
BspCNI	CTCAG	4 cut(s)	7, 453, 553, 1147
BspFNI	CGCG	1 cut(s)	377
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	2 cut(s)	247, 504
BspOI	GCTAGC	1 cut(s)	1031
BspPI	GGATC	4 cut(s)	573, 938, 1048, 1102
BspQI	GCTCTTC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	196
BspTI	CTTAAG	1 cut(s)	140
BsrFI	RCCGGY	2 cut(s)	321, 1147
BsrI	ACTGG	4 cut(s)	198, 621, 1041, 1127
BssAI	RCCGGY	2 cut(s)	321, 1147
BssECI	CCNNGG	2 cut(s)	118, 228
BssMI	GATC	6 cut(s)	508, 520, 565, 943, 1053, 1094
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	3 cut(s)	119, 408, 1017
Bst4CI	ACNGT	2 cut(s)	256, 597
Bst6I	CTCTTC	2 cut(s)	59, 68
BstAFI	CTTAAG	1 cut(s)	140
BstC8I	GCNNGC	3 cut(s)	10, 323, 1029
BstDEI	CTNAG	6 cut(s)	15, 214, 449, 461, 561, 1134
BstF5I	GGATG	2 cut(s)	334, 801
BstFNI	CGCG	1 cut(s)	377
BstKTI	GATC	6 cut(s)	511, 523, 568, 946, 1056, 1097
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	6 cut(s)	508, 520, 565, 943, 1053, 1094
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 434, 683, 971
BstNI	CCWGG	3 cut(s)	119, 408, 1017
BstNSI	RCATGY	1 cut(s)	1010
BstSCI	CCNGG	3 cut(s)	117, 406, 1015
BstSFI	CTRYAG	3 cut(s)	243, 500, 615
BstSLI	GKGCMC	1 cut(s)	745
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	4 cut(s)	147, 229, 257, 589
BstX2I	RGATCY	1 cut(s)	508
BstXI	CCANNNNNNTGG	2 cut(s)	738, 873
BstYI	RGATCY	1 cut(s)	508
Bsu36I	CCTNAGG	1 cut(s)	15
BsuRI	GGCC	7 cut(s)	20, 96, 321, 686, 730, 1119, 1151
BtsCI	GGATG	2 cut(s)	334, 801
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	2 cut(s)	411, 628
Cac8I	GCNNGC	3 cut(s)	10, 323, 1029
CaiI	CAGNNNCTG	3 cut(s)	193, 413, 460
CciI	TCATGA	1 cut(s)	271
Cfr10I	RCCGGY	2 cut(s)	321, 1147
Cfr13I	GGNCC	3 cut(s)	95, 929, 1118
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	4 cut(s)	197, 593, 646, 1004
CspCI	CAANNNNNGTGG	2 cut(s)	10, 45
CviAII	CATG	7 cut(s)	44, 237, 272, 633, 653, 1007, 1139
CviQI	GTAC	4 cut(s)	197, 593, 646, 1004
DdeI	CTNAG	6 cut(s)	15, 214, 449, 461, 561, 1134
DpnI	GATC	6 cut(s)	510, 522, 567, 945, 1055, 1096
DpnII	GATC	6 cut(s)	508, 520, 565, 943, 1053, 1094
EaeI	YGGCCR	2 cut(s)	319, 1149
Eam1104I	CTCTTC	2 cut(s)	59, 68
EarI	CTCTTC	2 cut(s)	59, 68
Ecl136II	GAGCTC	2 cut(s)	159, 428
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	2 cut(s)	161, 430
Eco32I	GATATC	1 cut(s)	857
Eco47I	GGWCC	1 cut(s)	929
Eco53kI	GAGCTC	2 cut(s)	159, 428
Eco81I	CCTNAGG	1 cut(s)	15
EcoICRI	GAGCTC	2 cut(s)	159, 428
EcoRII	CCWGG	3 cut(s)	117, 406, 1015
EcoRV	GATATC	1 cut(s)	857
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	2 cut(s)	161, 430
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	7 cut(s)	47, 240, 275, 636, 656, 1010, 1142
FatI	CATG	7 cut(s)	43, 236, 271, 632, 652, 1006, 1138
FauI	CCCGC	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	4 cut(s)	136, 243, 246, 603
FokI	GGATG	2 cut(s)	341, 808
FriOI	GRGCYC	2 cut(s)	161, 430
Fsp4HI	GCNGC	4 cut(s)	136, 243, 246, 603
FspBI	CTAG	2 cut(s)	951, 1028
GluI	GCNGC	4 cut(s)	136, 243, 246, 603
GsuI	CTGGAG	1 cut(s)	1058
HaeIII	GGCC	7 cut(s)	20, 96, 321, 686, 730, 1119, 1151
HapII	CCGG	3 cut(s)	249, 322, 1148
HgaI	GACGC	1 cut(s)	383
Hin1II	CATG	7 cut(s)	47, 240, 275, 636, 656, 1010, 1142
HinfI	GANTC	5 cut(s)	40, 233, 457, 637, 1108
HpaII	CCGG	3 cut(s)	249, 322, 1148
HphI	GGTGA	5 cut(s)	41, 49, 107, 530, 892
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	6 cut(s)	156, 423, 456, 462, 577, 752
Hpy188III	TCNNGA	3 cut(s)	272, 671, 914
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	5 cut(s)	108, 478, 676, 688, 871
HpyCH4III	ACNGT	2 cut(s)	256, 597
HpyCH4IV	ACGT	1 cut(s)	648
HpyCH4V	TGCA	5 cut(s)	187, 245, 416, 502, 710
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 434, 683, 971
HpyF3I	CTNAG	6 cut(s)	15, 214, 449, 461, 561, 1134
HpySE526I	ACGT	1 cut(s)	648
Hsp92II	CATG	7 cut(s)	47, 240, 275, 636, 656, 1010, 1142
KpnI	GGTACC	1 cut(s)	200
KroI	GCCGGC	1 cut(s)	321
KroNI	GCCGGC	1 cut(s)	323
Kzo9I	GATC	6 cut(s)	508, 520, 565, 943, 1053, 1094
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	970
Lsp1109I	GCAGC	4 cut(s)	147, 229, 257, 589
LweI	GCATC	3 cut(s)	697, 873, 1032
MaeI	CTAG	2 cut(s)	951, 1028
MaeII	ACGT	1 cut(s)	648
MaeIII	GTNAC	3 cut(s)	37, 380, 1066
MalI	GATC	6 cut(s)	510, 522, 567, 945, 1055, 1096
MboI	GATC	6 cut(s)	508, 520, 565, 943, 1053, 1094
MboII	GAAGA	3 cut(s)	46, 85, 292
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	3 cut(s)	161, 430, 745
MluCI	AATT	7 cut(s)	385, 471, 529, 570, 917, 937, 1072
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	2 cut(s)	419, 854
MroNI	GCCGGC	1 cut(s)	321
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	4 cut(s)	141, 557, 629, 1173
MspCI	CTTAAG	1 cut(s)	140
MspI	CCGG	3 cut(s)	249, 322, 1148
MspR9I	CCNGG	3 cut(s)	119, 408, 1017
MvaI	CCWGG	3 cut(s)	119, 408, 1017
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	4 cut(s)	224, 434, 683, 971
NaeI	GCCGGC	1 cut(s)	323
NdeII	GATC	6 cut(s)	508, 520, 565, 943, 1053, 1094
NgoMIV	GCCGGC	1 cut(s)	321
NheI	GCTAGC	1 cut(s)	1027
NlaIII	CATG	7 cut(s)	47, 240, 275, 636, 656, 1010, 1142
NlaIV	GGNNCC	1 cut(s)	198
NmeAIII	GCCGAG	1 cut(s)	712
NmuCI	GTSAC	2 cut(s)	37, 1066
NspI	RCATGY	1 cut(s)	1010
PagI	TCATGA	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	68
PdiI	GCCGGC	1 cut(s)	323
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	4 cut(s)	233, 457, 637, 1108
PfoI	TCCNGGA	1 cut(s)	1015
PkrI	GCNGC	4 cut(s)	137, 244, 247, 604
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Psp124BI	GAGCTC	2 cut(s)	161, 430
Psp6I	CCWGG	3 cut(s)	117, 406, 1015
PspGI	CCWGG	3 cut(s)	117, 406, 1015
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	3 cut(s)	95, 929, 1118
PstI	CTGCAG	2 cut(s)	247, 504
PstNI	CAGNNNCTG	3 cut(s)	193, 413, 460
PsuI	RGATCY	1 cut(s)	508
RsaI	GTAC	4 cut(s)	198, 594, 647, 1005
RsaNI	GTAC	4 cut(s)	197, 593, 646, 1004
SacI	GAGCTC	2 cut(s)	161, 430
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	4 cut(s)	141, 557, 629, 1173
SatI	GCNGC	4 cut(s)	136, 243, 246, 603
Sau3AI	GATC	6 cut(s)	508, 520, 565, 943, 1053, 1094
Sau96I	GGNCC	3 cut(s)	95, 929, 1118
ScaI	AGTACT	1 cut(s)	594
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	3 cut(s)	119, 408, 1017
SduI	GDGCHC	3 cut(s)	161, 430, 745
SfaNI	GCATC	3 cut(s)	697, 873, 1032
SfcI	CTRYAG	3 cut(s)	243, 500, 615
SinI	GGWCC	1 cut(s)	929
SmlI	CTYRAG	4 cut(s)	140, 350, 641, 790
SmoI	CTYRAG	4 cut(s)	140, 350, 641, 790
Sse9I	AATT	7 cut(s)	385, 471, 529, 570, 917, 937, 1072
SsiI	CCGC	1 cut(s)	377
SspMI	CTAG	2 cut(s)	951, 1028
SstI	GAGCTC	2 cut(s)	161, 430
StyD4I	CCNGG	3 cut(s)	117, 406, 1015
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	256, 597
TaiI	ACGT	1 cut(s)	651
TasI	AATT	7 cut(s)	385, 471, 529, 570, 917, 937, 1072
TatI	WGTACW	2 cut(s)	592, 1003
TfiI	GAWTC	4 cut(s)	233, 457, 637, 1108
Tru1I	TTAA	4 cut(s)	141, 557, 629, 1173
Tru9I	TTAA	4 cut(s)	141, 557, 629, 1173
TscAI	CASTG	2 cut(s)	418, 628
TseFI	GTSAC	2 cut(s)	37, 1066
TseI	GCWGC	4 cut(s)	135, 242, 245, 602
Tsp45I	GTSAC	2 cut(s)	37, 1066
TspDTI	ATGAA	4 cut(s)	288, 293, 555, 973
TspRI	CASTG	2 cut(s)	418, 628
Vha464I	CTTAAG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	929
XapI	RAATTY	3 cut(s)	529, 570, 937
XceI	RCATGY	1 cut(s)	1010
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	372
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	2 cut(s)	951, 1028
ZrmI	AGTACT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.