Prupe.7G142600_v2.0.a1

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0015376
Physical Location & Seq
Reverse (-)
15734880 .. 15738674
3795 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G142600.1

Sequence Viewer

Length: 1116 bp
ATGATGAAATCTTGCAATATTGTGGCCTTGGTAGGCTTGGTTCTTTTGTTCATGATCCATTTGGCAAATGCTGCTGAAAATAAAGGGTTAGGAGCTTCTTTCATCTTTGGTGATTCTCTAGTTGATTCTGGAAACAACAACTATTTACCATCGTTGTCCAAGGCAAATATTGTTCCTAATGGGATTGATTTTAAAGCATCTGGAGGAAAACCCACCGGGAGGTATACCAATGGCAGAACCATTGGTGACATAGTTGGTGAAGAATTGGGGCAACCAAATTATGCACTCCCATATTTGGCACCAAATACTACAGGGAAATCAATCTTGTATGGGGTGAATTATGCATCAGGAGGAGCAGGGATTTTGAACTCAACAGGGAGAATATTTGTTAATAGGGTGGGAATGGATATCCAAGTTGATTTTTTCAACCAGACAAGGAAGCAGATTGATAAGGTGTTGGGCCCATCAAAGGCAAAAGAGTACATTATGAAAAGATCTATATTTTCAATCACAATTGGATCCAACGACTTCTTGAACAATTATCTGCTACCAGTCCTCTCCATTGGAGCAAGAATTTCTGAGAGCCCAGATGCGTTTATTGATGATCTGATAAGTCACTTCAGGGCCCAACTCACTAGACTTTACCAATTGGATGCTCGAAAATTTGTGATTGGAAATGTTGGTCCCCTAGGCTGCATCCCTTACCAGAAGACTATAAATCAACTAAATCCAGACGAGTGTGTGGAGCTGCCCAATAAGCTGGCTCTTCAGTACAATGGCCGGTTGAAGGACTTGCTTGCTGAGCTAAATGACAACCTCCCAGGGTCAACATTTGTTTATGCAAATGTATATGATCTGGTGAAGGAGCTCATCACAAATTATGACAAATATGGATTTACAACAGCAAGTAAAGCTTGCTGTGGAAATGGGGGCCAATACGCAGGTATAGTTCCATGTGGTCCAACGTCTAGTTTGTGCTCGGATCGCTCCATGCATGTTTTCTGGGATCCCTACCATCCCAGTGAGGCTGCTAATCTTTTACTCGCCAAAAAATTGATTGATGGAGACACCAGATTCATTTCTCCAATGAATCTCAGACAACTTCGCGACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

372

Amino Acids

40.51

Weight (kDa)

8.34

Isoelectric Point (pI)

28.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23540
fragaria_vesca FvH4_1g14780
malus_domestica MD02G1161000.v1.1 MD15G1275100.v1.1
prunus_persica Prupe.7G142600_v2.0.a1
pyrus_communis pycom02g12710 pycom15g23820
rosa_chinensis RchiOBHm_Chr2g0103741
rosa_laevigata RLG00000017253
rosa_multiflora Rmu_sc0001852.1_g000002
rosa_roxburghii Rroxscaffold_2G00139440
rosa_rugosa Rorug02G0117000
rosa_samantha Rh2AG165800 Rh2BG173100 Rh2CG171800
rosa_wichuraiana Rw2G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 932
AccB1I GGYRCC 1 cut(s) 298
AccI GTMKAC 1 cut(s) 224
AccII CGCG 1 cut(s) 1107
AclWI GGATC 6 cut(s) 49, 513, 526, 990, 1001, 1014
AcoI YGGCCR 1 cut(s) 778
AcsI RAATTY 2 cut(s) 573, 662
AcuI CTGAAG 2 cut(s) 604, 752
AfaI GTAC 2 cut(s) 482, 773
AfiI CCNNNNNNNGG 4 cut(s) 219, 295, 469, 787
AgsI TTSAA 5 cut(s) 367, 427, 507, 535, 787
AjnI CCWGG 1 cut(s) 820
AluBI AGCT 6 cut(s) 95, 748, 760, 805, 868, 914
AluI AGCT 6 cut(s) 95, 748, 760, 805, 868, 914
Alw21I GWGCWC 2 cut(s) 870, 980
Alw26I GTCTC 1 cut(s) 1059
AlwI GGATC 6 cut(s) 49, 513, 526, 990, 1001, 1014
AoxI GGCC 5 cut(s) 24, 460, 624, 778, 931
ApaI GGGCCC 2 cut(s) 464, 628
ApeKI GCWGC 4 cut(s) 71, 693, 748, 1028
ApoI RAATTY 2 cut(s) 573, 662
AspA2I CCTAGG 1 cut(s) 688
AspS9I GGNCC 7 cut(s) 460, 461, 624, 625, 683, 931, 959
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 5 cut(s) 122, 257, 269, 346, 871
AvaII GGWCC 2 cut(s) 683, 959
AvrII CCTAGG 1 cut(s) 688
BaeGI GKGCMC 2 cut(s) 464, 628
BamHI GGATCC 2 cut(s) 518, 1006
BanI GGYRCC 1 cut(s) 298
BanII GRGCYC 4 cut(s) 464, 587, 628, 870
BbsI GAAGAC 1 cut(s) 716
Bbv12I GWGCWC 2 cut(s) 870, 980
BbvI GCAGC 4 cut(s) 58, 680, 735, 1015
BccI CCATC 4 cut(s) 157, 472, 1023, 1055
BciT130I CCWGG 1 cut(s) 822
BcnI CCSGG 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 1059
BfaI CTAG 4 cut(s) 119, 636, 689, 969
BfmI CTRYAG 1 cut(s) 309
BfuAI ACCTGC 1 cut(s) 932
BglII AGATCT 1 cut(s) 494
BisI GCNGC 4 cut(s) 72, 694, 749, 1029
BlnI CCTAGG 1 cut(s) 688
BlpI GCTNAGC 1 cut(s) 801
BlsI GCNGC 4 cut(s) 73, 695, 750, 1030
Bme1390I CCNGG 2 cut(s) 217, 822
Bme18I GGWCC 2 cut(s) 683, 959
BmgT120I GGNCC 7 cut(s) 460, 461, 624, 625, 683, 931, 959
BmiI GGNNCC 7 cut(s) 300, 462, 520, 626, 685, 932, 1008
BmrFI CCNGG 2 cut(s) 217, 822
BmrI ACTGGG 1 cut(s) 1014
BmsI GCATC 5 cut(s) 206, 353, 580, 643, 705
BmuI ACTGGG 1 cut(s) 1014
BpiI GAAGAC 1 cut(s) 716
BpmI CTGGAG 1 cut(s) 222
Bpu1102I GCTNAGC 1 cut(s) 801
BpuMI CCSGG 1 cut(s) 217
BsaJI CCNNGG 5 cut(s) 27, 159, 688, 820, 821
Bsc4I CCNNNNNNNGG 4 cut(s) 219, 295, 469, 787
Bse118I RCCGGY 1 cut(s) 780
Bse1I ACTGG 2 cut(s) 551, 1020
BseBI CCWGG 1 cut(s) 822
BseDI CCNNGG 5 cut(s) 27, 159, 688, 820, 821
BseGI GGATG 3 cut(s) 658, 696, 1015
BseLI CCNNNNNNNGG 4 cut(s) 219, 295, 469, 787
BseMII CTCAG 3 cut(s) 570, 792, 1108
BseNI ACTGG 2 cut(s) 551, 1020
BseRI GAGGAG 1 cut(s) 366
BseSI GKGCMC 2 cut(s) 464, 628
BseXI GCAGC 4 cut(s) 58, 680, 735, 1015
Bsh1236I CGCG 1 cut(s) 1107
BshFI GGCC 5 cut(s) 26, 462, 626, 780, 933
BshNI GGYRCC 1 cut(s) 298
BsiHKAI GWGCWC 2 cut(s) 870, 980
BsiSI CCGG 2 cut(s) 216, 781
BslFI GGGAC 1 cut(s) 669
BslI CCNNNNNNNGG 4 cut(s) 219, 295, 469, 787
BsmAI GTCTC 1 cut(s) 1059
BsmFI GGGAC 1 cut(s) 669
BsnI GGCC 5 cut(s) 26, 462, 626, 780, 933
Bsp120I GGGCCC 2 cut(s) 460, 624
Bsp1286I GDGCHC 5 cut(s) 464, 587, 628, 870, 980
Bsp143I GATC 7 cut(s) 54, 494, 518, 604, 853, 982, 1006
Bsp1720I GCTNAGC 1 cut(s) 801
Bsp68I TCGCGA 1 cut(s) 1107
BspANI GGCC 5 cut(s) 26, 462, 626, 780, 933
BspCNI CTCAG 3 cut(s) 571, 793, 1107
BspFNI CGCG 1 cut(s) 1107
BspHI TCATGA 1 cut(s) 51
BspLI GGNNCC 7 cut(s) 300, 462, 520, 626, 685, 932, 1008
BspMI ACCTGC 1 cut(s) 932
BspPI GGATC 6 cut(s) 49, 513, 526, 990, 1001, 1014
BspQI GCTCTTC 1 cut(s) 771
BspT107I GGYRCC 1 cut(s) 298
BsrFI RCCGGY 1 cut(s) 780
BsrI ACTGG 2 cut(s) 551, 1020
BssAI RCCGGY 1 cut(s) 780
BssECI CCNNGG 5 cut(s) 27, 159, 688, 820, 821
BssMI GATC 7 cut(s) 54, 494, 518, 604, 853, 982, 1006
BssNAI GTATAC 1 cut(s) 225
BssT1I CCWWGG 3 cut(s) 27, 159, 688
Bst1107I GTATAC 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 822
Bst6I CTCTTC 1 cut(s) 771
BstAPI GCANNNNNTGC 1 cut(s) 71
BstC8I GCNNGC 3 cut(s) 762, 798, 916
BstDEI CTNAG 3 cut(s) 579, 801, 1094
BstF5I GGATG 3 cut(s) 658, 696, 1015
BstFNI CGCG 1 cut(s) 1107
BstKTI GATC 7 cut(s) 57, 497, 521, 607, 856, 985, 1009
BstMAI GTCTC 1 cut(s) 1059
BstMBI GATC 7 cut(s) 54, 494, 518, 604, 853, 982, 1006
BstMWI GCNNNNNNNGC 5 cut(s) 71, 757, 802, 911, 984
BstNI CCWGG 1 cut(s) 822
BstNSI RCATGY 1 cut(s) 998
BstSCI CCNGG 2 cut(s) 215, 820
BstSFI CTRYAG 1 cut(s) 309
BstSLI GKGCMC 2 cut(s) 464, 628
BstUI CGCG 1 cut(s) 1107
BstV1I GCAGC 4 cut(s) 58, 680, 735, 1015
BstV2I GAAGAC 1 cut(s) 716
BstX2I RGATCY 3 cut(s) 494, 518, 1006
BstXI CCANNNNNNTGG 1 cut(s) 760
BstYI RGATCY 3 cut(s) 494, 518, 1006
BstZ17I GTATAC 1 cut(s) 225
BsuRI GGCC 5 cut(s) 26, 462, 626, 780, 933
BtsCI GGATG 3 cut(s) 658, 696, 1015
BtsIMutI CAGTG 1 cut(s) 1027
BtuMI TCGCGA 1 cut(s) 1107
BveI ACCTGC 1 cut(s) 932
Cac8I GCNNGC 3 cut(s) 762, 798, 916
CciI TCATGA 1 cut(s) 51
Cfr10I RCCGGY 1 cut(s) 780
Cfr13I GGNCC 7 cut(s) 460, 461, 624, 625, 683, 931, 959
Csp6I GTAC 2 cut(s) 481, 772
CviAII CATG 4 cut(s) 52, 954, 991, 995
CviQI GTAC 2 cut(s) 481, 772
DdeI CTNAG 3 cut(s) 579, 801, 1094
DpnI GATC 7 cut(s) 56, 496, 520, 606, 855, 984, 1008
DpnII GATC 7 cut(s) 54, 494, 518, 604, 853, 982, 1006
DraI TTTAAA 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 778
Eam1104I CTCTTC 1 cut(s) 771
EarI CTCTTC 1 cut(s) 771
Ecl136II GAGCTC 1 cut(s) 868
Eco130I CCWWGG 3 cut(s) 27, 159, 688
Eco24I GRGCYC 4 cut(s) 464, 587, 628, 870
Eco32I GATATC 1 cut(s) 409
Eco47I GGWCC 2 cut(s) 683, 959
Eco53kI GAGCTC 1 cut(s) 868
Eco57I CTGAAG 2 cut(s) 604, 752
EcoICRI GAGCTC 1 cut(s) 868
EcoO109I RGGNCCY 1 cut(s) 624
EcoRII CCWGG 1 cut(s) 820
EcoRV GATATC 1 cut(s) 409
EcoT14I CCWWGG 3 cut(s) 27, 159, 688
EcoT22I ATGCAT 2 cut(s) 346, 996
EcoT38I GRGCYC 4 cut(s) 464, 587, 628, 870
ErhI CCWWGG 3 cut(s) 27, 159, 688
FaeI CATG 4 cut(s) 55, 957, 994, 998
FalI AAGNNNNNCTT 2 cut(s) 898, 930
FaqI GGGAC 1 cut(s) 669
FatI CATG 4 cut(s) 51, 953, 990, 994
FblI GTMKAC 1 cut(s) 224
Fnu4HI GCNGC 4 cut(s) 72, 694, 749, 1029
FokI GGATG 3 cut(s) 665, 683, 1002
FriOI GRGCYC 4 cut(s) 464, 587, 628, 870
Fsp4HI GCNGC 4 cut(s) 72, 694, 749, 1029
FspBI CTAG 4 cut(s) 119, 636, 689, 969
GluI GCNGC 4 cut(s) 72, 694, 749, 1029
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 5 cut(s) 26, 462, 626, 780, 933
HapII CCGG 2 cut(s) 216, 781
Hin1II CATG 4 cut(s) 55, 957, 994, 998
HincII GTYRAC 1 cut(s) 828
HindII GTYRAC 1 cut(s) 828
HindIII AAGCTT 1 cut(s) 912
HinfI GANTC 4 cut(s) 113, 125, 1074, 1090
HpaII CCGG 2 cut(s) 216, 781
HphI GGTGA 5 cut(s) 122, 257, 269, 346, 871
Hpy166II GTNNAC 2 cut(s) 225, 828
Hpy188I TCNGA 4 cut(s) 580, 609, 982, 1097
Hpy188III TCNNGA 7 cut(s) 52, 129, 201, 348, 532, 731, 1106
Hpy8I GTNNAC 2 cut(s) 225, 828
HpyAV CCTTC 2 cut(s) 781, 856
HpyCH4IV ACGT 1 cut(s) 965
HpyCH4V TGCA 6 cut(s) 15, 284, 344, 696, 842, 994
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 757, 802, 911, 984
HpyF3I CTNAG 3 cut(s) 579, 801, 1094
HpySE526I ACGT 1 cut(s) 965
Hsp92II CATG 4 cut(s) 55, 957, 994, 998
Kzo9I GATC 7 cut(s) 54, 494, 518, 604, 853, 982, 1006
LguI GCTCTTC 1 cut(s) 771
LmnI GCTCC 6 cut(s) 92, 353, 566, 745, 865, 992
Lsp1109I GCAGC 4 cut(s) 58, 680, 735, 1015
LweI GCATC 5 cut(s) 206, 353, 580, 643, 705
MaeI CTAG 4 cut(s) 119, 636, 689, 969
MaeII ACGT 1 cut(s) 965
MaeIII GTNAC 2 cut(s) 245, 614
MalI GATC 7 cut(s) 56, 496, 520, 606, 855, 984, 1008
MboI GATC 7 cut(s) 54, 494, 518, 604, 853, 982, 1006
MboII GAAGA 3 cut(s) 272, 721, 758
MfeI CAATTG 2 cut(s) 513, 647
MflI RGATCY 3 cut(s) 494, 518, 1006
MhlI GDGCHC 5 cut(s) 464, 587, 628, 870, 980
MmeI TCCRAC 2 cut(s) 546, 986
MnlI CCTC 6 cut(s) 197, 213, 344, 566, 827, 1018
Mph1103I ATGCAT 2 cut(s) 346, 996
MseI TTAA 3 cut(s) 192, 390, 1114
MslI CAYNNNNRTG 1 cut(s) 1020
MspI CCGG 2 cut(s) 216, 781
MspR9I CCNGG 2 cut(s) 217, 822
MunI CAATTG 2 cut(s) 513, 647
MvaI CCWGG 1 cut(s) 822
MvnI CGCG 1 cut(s) 1107
MwoI GCNNNNNNNGC 5 cut(s) 71, 757, 802, 911, 984
NciI CCSGG 1 cut(s) 217
NdeII GATC 7 cut(s) 54, 494, 518, 604, 853, 982, 1006
NlaIII CATG 4 cut(s) 55, 957, 994, 998
NlaIV GGNNCC 7 cut(s) 300, 462, 520, 626, 685, 932, 1008
NmuCI GTSAC 2 cut(s) 245, 614
NruI TCGCGA 1 cut(s) 1107
NsiI ATGCAT 2 cut(s) 346, 996
NspI RCATGY 1 cut(s) 998
PagI TCATGA 1 cut(s) 51
PasI CCCWGGG 1 cut(s) 821
PciSI GCTCTTC 1 cut(s) 771
PfeI GAWTC 4 cut(s) 113, 125, 1074, 1090
PkrI GCNGC 4 cut(s) 73, 695, 750, 1030
Psp124BI GAGCTC 1 cut(s) 870
Psp6I CCWGG 1 cut(s) 820
PspGI CCWGG 1 cut(s) 820
PspN4I GGNNCC 7 cut(s) 300, 462, 520, 626, 685, 932, 1008
PspOMI GGGCCC 2 cut(s) 460, 624
PspPI GGNCC 7 cut(s) 460, 461, 624, 625, 683, 931, 959
PsrI GAACNNNNNNTAC 2 cut(s) 24, 56
PsuI RGATCY 3 cut(s) 494, 518, 1006
RruI TCGCGA 1 cut(s) 1107
RsaI GTAC 2 cut(s) 482, 773
RsaNI GTAC 2 cut(s) 481, 772
RseI CAYNNNNRTG 1 cut(s) 1020
SacI GAGCTC 1 cut(s) 870
SapI GCTCTTC 1 cut(s) 771
SaqAI TTAA 3 cut(s) 192, 390, 1114
SatI GCNGC 4 cut(s) 72, 694, 749, 1029
Sau3AI GATC 7 cut(s) 54, 494, 518, 604, 853, 982, 1006
Sau96I GGNCC 7 cut(s) 460, 461, 624, 625, 683, 931, 959
ScrFI CCNGG 2 cut(s) 217, 822
SduI GDGCHC 5 cut(s) 464, 587, 628, 870, 980
SfaNI GCATC 5 cut(s) 206, 353, 580, 643, 705
SfcI CTRYAG 1 cut(s) 309
SinI GGWCC 2 cut(s) 683, 959
SmiMI CAYNNNNRTG 1 cut(s) 1020
SspI AATATT 3 cut(s) 19, 169, 384
SspMI CTAG 4 cut(s) 119, 636, 689, 969
SstI GAGCTC 1 cut(s) 870
StyD4I CCNGG 2 cut(s) 215, 820
StyI CCWWGG 3 cut(s) 27, 159, 688
TaiI ACGT 1 cut(s) 968
TaqI TCGA 1 cut(s) 658
TatI WGTACW 2 cut(s) 480, 771
TfiI GAWTC 4 cut(s) 113, 125, 1074, 1090
Tru1I TTAA 3 cut(s) 192, 390, 1114
Tru9I TTAA 3 cut(s) 192, 390, 1114
TscAI CASTG 1 cut(s) 1027
TseFI GTSAC 2 cut(s) 245, 614
TseI GCWGC 4 cut(s) 71, 693, 748, 1028
Tsp45I GTSAC 2 cut(s) 245, 614
TspDTI ATGAA 6 cut(s) 20, 40, 91, 503, 1066, 1103
TspRI CASTG 1 cut(s) 1027
VpaK11BI GGWCC 2 cut(s) 683, 959
XapI RAATTY 2 cut(s) 573, 662
XceI RCATGY 1 cut(s) 998
XmaJI CCTAGG 1 cut(s) 688
XmiI GTMKAC 1 cut(s) 224
XspI CTAG 4 cut(s) 119, 636, 689, 969
Zsp2I ATGCAT 2 cut(s) 346, 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.