Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0017156

Physical Location & Seq

Genomic Coordinates Reverse (-)

20947874 .. 20948703

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G246000.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGATTTCAAATTTATGTGACAATTCCCTGCAGATTTGTACTATAAAAATGAATCTCCACTGTTGTGCAAAGTGTCCAATAAAATTGAAGGAAAAGTTGCAGAAACTCAATGGAGTGGAGGACATAAACATAGATCCAGAACAAGGATTATTAAAAGTTTCAGGTAACATAGACCCCATGGTTCTCACAAATATAGTCAAAAACATGGATAAAAAGGCAGAACTTTGGTCCTTCCAGAAAGAACCCTACAAAAACAATGTTAATATTGGTGCGTCTACTAAGTGCAACATCCAAATTGGCGAAGATTGCTCCTGTGATGGTGATGAGGCTGAAAGCAGTTCTGATGATGAAAGCAAACGCAGTATTGTACCAAAGAAGCAACATGGAGTTCTCACTTGGGCCAAAAATGACAAGAAGAAGAAGAATGGGAAGGGATTTTCTGGCATGGGAATGGGCATGGGCATGCCTATGCCTCCTCAGCGTCGGCCACCTATGAGGCCATCTATGGGCATTCCGGCCCATAGGAGCTTTCATGGGATACCAAGGCCCGGATACCAGCCACCAAACTCATATTATCAACCAATGACGTATTATAGACCGTCACCGCCACCATATGGTTACTACGGACAAATTCAGCCACCACCCTATTCTTGTTTTCAGTCAAGATCGCCACCGAATGTTAACCCTATTATCCACTACACTAATTATGCAGACAACTATCGGTACCCCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

245

Amino Acids

27.52

Weight (kDa)

9.1

Isoelectric Point (pI)

60.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04900
fragaria_vesca	FvH4_2g23991
malus_domestica	MD11G1290300.v1.1
prunus_persica	Prupe.7G246000_v2.0.a1 Prupe.8G245300_v2.0.a1
rosa_laevigata	RLG00000012095
rosa_multiflora	Rmu_sc0002226.1_g000022
rosa_roxburghii	Rroxscaffold_7G00175820
rosa_rugosa	Rorug06G0221100
rosa_samantha	Rh6AG333700 Rh6BG340700 Rh6CG346900 Rh6DG334100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	723
AccB1I	GGYRCC	1 cut(s)	723
AccB7I	CCANNNNNTGG	1 cut(s)	614
AccI	GTMKAC	1 cut(s)	275
AciI	CCGC	1 cut(s)	605
AclWI	GGATC	1 cut(s)	128
AcoI	YGGCCR	1 cut(s)	485
AcsI	RAATTY	2 cut(s)	10, 630
AfaI	GTAC	3 cut(s)	40, 369, 725
AfiI	CCNNNNNNNGG	4 cut(s)	143, 506, 548, 614
AgsI	TTSAA	2 cut(s)	9, 88
AleI	CACNNNNGTG	1 cut(s)	63
AluBI	AGCT	1 cut(s)	528
AluI	AGCT	1 cut(s)	528
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	5 cut(s)	399, 485, 497, 516, 545
ApoI	RAATTY	2 cut(s)	10, 630
Asp718I	GGTACC	1 cut(s)	723
AspS9I	GGNCC	4 cut(s)	228, 399, 517, 546
AsuC2I	CCSGG	1 cut(s)	549
AsuHPI	GGTGA	2 cut(s)	332, 594
AvaII	GGWCC	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	723
BbvCI	CCTCAGC	1 cut(s)	477
BccI	CCATC	2 cut(s)	311, 508
BciVI	GTATCC	2 cut(s)	531, 545
BcnI	CCSGG	1 cut(s)	549
BfmI	CTRYAG	1 cut(s)	29
BfuI	GTATCC	2 cut(s)	531, 545
Bme1390I	CCNGG	1 cut(s)	549
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	4 cut(s)	228, 399, 517, 546
BmiI	GGNNCC	1 cut(s)	725
BmrFI	CCNGG	1 cut(s)	549
Bpu10I	CCTNAGC	1 cut(s)	477
BpuMI	CCSGG	1 cut(s)	549
BsaJI	CCNNGG	2 cut(s)	177, 542
Bsc4I	CCNNNNNNNGG	4 cut(s)	143, 506, 548, 614
BseDI	CCNNGG	2 cut(s)	177, 542
BseGI	GGATG	1 cut(s)	288
BseLI	CCNNNNNNNGG	4 cut(s)	143, 506, 548, 614
BseMII	CTCAG	1 cut(s)	491
BseRI	GAGGAG	1 cut(s)	465
BshFI	GGCC	5 cut(s)	401, 487, 499, 518, 547
BshNI	GGYRCC	1 cut(s)	723
BsiSI	CCGG	2 cut(s)	515, 549
BslI	CCNNNNNNNGG	4 cut(s)	143, 506, 548, 614
BsmI	GAATGC	1 cut(s)	510
BsnI	GGCC	5 cut(s)	401, 487, 499, 518, 547
Bsp143I	GATC	2 cut(s)	133, 665
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	1 cut(s)	605
BspANI	GGCC	5 cut(s)	401, 487, 499, 518, 547
BspCNI	CTCAG	1 cut(s)	490
BspLI	GGNNCC	1 cut(s)	725
BspMAI	CTGCAG	1 cut(s)	33
BspPI	GGATC	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	723
BssECI	CCNNGG	2 cut(s)	177, 542
BssMI	GATC	2 cut(s)	133, 665
BssT1I	CCWWGG	2 cut(s)	177, 542
Bst4CI	ACNGT	2 cut(s)	62, 600
BstC8I	GCNNGC	1 cut(s)	464
BstDEI	CTNAG	2 cut(s)	279, 477
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	288
BstKTI	GATC	2 cut(s)	136, 668
BstMBI	GATC	2 cut(s)	133, 665
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 478
BstNSI	RCATGY	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	547
BstSFI	CTRYAG	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuI	GTATCC	2 cut(s)	531, 545
BsuRI	GGCC	5 cut(s)	401, 487, 499, 518, 547
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	464
Cfr13I	GGNCC	4 cut(s)	228, 399, 517, 546
CseI	GACGC	2 cut(s)	261, 470
Csp6I	GTAC	3 cut(s)	39, 368, 724
CviAII	CATG	8 cut(s)	178, 205, 383, 445, 457, 463, 533, 730
CviJI	RGCY	9 cut(s)	329, 401, 487, 499, 518, 528, 547, 559, 637
CviKI_1	RGCY	9 cut(s)	329, 401, 487, 499, 518, 528, 547, 559, 637
CviQI	GTAC	3 cut(s)	39, 368, 724
DdeI	CTNAG	2 cut(s)	279, 477
DpnI	GATC	2 cut(s)	135, 667
DpnII	GATC	2 cut(s)	133, 665
EaeI	YGGCCR	1 cut(s)	485
Eco130I	CCWWGG	2 cut(s)	177, 542
Eco47I	GGWCC	1 cut(s)	228
EcoT14I	CCWWGG	2 cut(s)	177, 542
ErhI	CCWWGG	2 cut(s)	177, 542
FaeI	CATG	8 cut(s)	181, 208, 386, 448, 460, 466, 536, 733
FatI	CATG	8 cut(s)	177, 204, 382, 444, 456, 462, 532, 729
FauNDI	CATATG	1 cut(s)	613
FblI	GTMKAC	1 cut(s)	275
FokI	GGATG	1 cut(s)	275
HaeIII	GGCC	5 cut(s)	401, 487, 499, 518, 547
HapII	CCGG	2 cut(s)	515, 549
HgaI	GACGC	2 cut(s)	261, 470
Hin1II	CATG	8 cut(s)	181, 208, 386, 448, 460, 466, 536, 733
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HinfI	GANTC	1 cut(s)	52
HpaI	GTTAAC	1 cut(s)	682
HpaII	CCGG	2 cut(s)	515, 549
HphI	GGTGA	2 cut(s)	332, 594
Hpy166II	GTNNAC	2 cut(s)	276, 682
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	3 cut(s)	137, 235, 663
Hpy8I	GTNNAC	2 cut(s)	276, 682
Hpy99I	CGWCG	1 cut(s)	486
HpyAV	CCTTC	3 cut(s)	82, 241, 424
HpyCH4III	ACNGT	2 cut(s)	62, 600
HpyCH4IV	ACGT	1 cut(s)	587
HpyCH4V	TGCA	5 cut(s)	31, 68, 100, 285, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 478
HpyF3I	CTNAG	2 cut(s)	279, 477
HpySE526I	ACGT	1 cut(s)	587
Hsp92II	CATG	8 cut(s)	181, 208, 386, 448, 460, 466, 536, 733
KpnI	GGTACC	1 cut(s)	727
KspAI	GTTAAC	1 cut(s)	682
Kzo9I	GATC	2 cut(s)	133, 665
LmnI	GCTCC	2 cut(s)	314, 525
LpnPI	CCDG	9 cut(s)	41, 147, 150, 248, 325, 426, 528, 562, 569
MaeII	ACGT	1 cut(s)	587
MaeIII	GTNAC	4 cut(s)	17, 164, 600, 617
MalI	GATC	2 cut(s)	135, 667
MboI	GATC	2 cut(s)	133, 665
MboII	GAAGA	4 cut(s)	314, 427, 430, 433
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	6 cut(s)	10, 22, 83, 294, 630, 703
MnlI	CCTC	5 cut(s)	112, 319, 483, 486, 489
MseI	TTAA	3 cut(s)	152, 261, 681
MslI	CAYNNNNRTG	4 cut(s)	63, 449, 461, 467
MspI	CCGG	2 cut(s)	515, 549
MspR9I	CCNGG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	510
MwoI	GCNNNNNNNGC	2 cut(s)	306, 478
NciI	CCSGG	1 cut(s)	549
NcoI	CCATGG	1 cut(s)	177
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	2 cut(s)	133, 665
NlaIII	CATG	8 cut(s)	181, 208, 386, 448, 460, 466, 536, 733
NlaIV	GGNNCC	1 cut(s)	725
NmuCI	GTSAC	2 cut(s)	17, 600
NspI	RCATGY	1 cut(s)	466
OliI	CACNNNNGTG	1 cut(s)	63
PaeI	GCATGC	1 cut(s)	466
PctI	GAATGC	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	52
PflMI	CCANNNNNTGG	1 cut(s)	614
PspN4I	GGNNCC	1 cut(s)	725
PspPI	GGNCC	4 cut(s)	228, 399, 517, 546
PstI	CTGCAG	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	3 cut(s)	40, 369, 725
RsaNI	GTAC	3 cut(s)	39, 368, 724
RseI	CAYNNNNRTG	4 cut(s)	63, 449, 461, 467
SaqAI	TTAA	3 cut(s)	152, 261, 681
Sau3AI	GATC	2 cut(s)	133, 665
Sau96I	GGNCC	4 cut(s)	228, 399, 517, 546
ScrFI	CCNGG	1 cut(s)	549
SetI	ASST	4 cut(s)	166, 493, 530, 590
SfcI	CTRYAG	1 cut(s)	29
SinI	GGWCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	4 cut(s)	63, 449, 461, 467
SphI	GCATGC	1 cut(s)	466
Sse9I	AATT	6 cut(s)	10, 22, 83, 294, 630, 703
SsiI	CCGC	1 cut(s)	605
SspI	AATATT	1 cut(s)	265
StyD4I	CCNGG	1 cut(s)	547
StyI	CCWWGG	2 cut(s)	177, 542
TaaI	ACNGT	2 cut(s)	62, 600
TaiI	ACGT	1 cut(s)	590
TasI	AATT	6 cut(s)	10, 22, 83, 294, 630, 703
TatI	WGTACW	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	3 cut(s)	152, 261, 681
Tru9I	TTAA	3 cut(s)	152, 261, 681
TscAI	CASTG	1 cut(s)	65
TseFI	GTSAC	2 cut(s)	17, 600
Tsp45I	GTSAC	2 cut(s)	17, 600
TspDTI	ATGAA	3 cut(s)	65, 363, 521
TspGWI	ACGGA	1 cut(s)	639
TspRI	CASTG	1 cut(s)	65
Van91I	CCANNNNNTGG	1 cut(s)	614
VpaK11BI	GGWCC	1 cut(s)	228
XapI	RAATTY	2 cut(s)	10, 630
XceI	RCATGY	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.