Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013164

Physical Location & Seq

Genomic Coordinates Forward (+)

18417627 .. 18421892

Gene Structure 4266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G187300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGCAACCCAAGCCAAAAGCCCTTCTCTTTGTCATTCTTATAAAATTCAATGCTTTCTTCACAATCCTGTTCCTGCACCACTCTCACTTGTTGGCAATGGCAAGGCTCACAAGAAGCCTCTCAAATTTAGTTGCAGATCCAACGGCAACGATGATTATTACATAGATGCTCCTATTGAAGTGGGTGATGGCTTTAGTTTCAGTGGAGGAAAGTATTCGGATGGGCCAAGCCCTTCTGATGAATGGTTTAAGCAAGGGAAGATAGTGAAAGCTTATGCTGCTTTTGGTTCCGGTGAGAAGGCAAAAGACCCCATTTTTGGACTTGCAATGGGTGCTGATTCTCAGGCCTCCACTGATATTTTCAGATGGTTTTGCGTTGAATCCGGAAGTGCTGATAACCCTTCAGTTATATTAATTCATGGTTTCCCTTCTCAGGCATACTCTTACCGCAAAGTTCTTCCCATGCTTTCTAAAGACTATCACGCAATTGCTTTTGATTGGCTGGGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGCTTTGACTACACTCTGAATGAGTTTGTATCATCCTTGGAGTCATTTATTAATGAAGTTGCTGTTAAACAGGTCACACTCGTTGTCCAGGGATACTTTGCTCCAGTTGCTGTTAAATATGCTAGCAGCCATCAGGAAAAGATTGACAACATAATACTCTTAAACCCTCCTCTTACAGCGAAGCATGCCAACCTTCCATCAACCTTGTCCATATTCAGCAACTTTTTGTTAGGGGAAATATTTTCTCAGGATCCTCTAAGGGCTAGTGATAAAGCCTTGACGAGTTGCGGACCTTATAAAATGAAAGAGGATGATGCAATGGTTTATAGAAATCCTTACCTCACATCTGGGGCATCTGGGTTTGCATTAAATGCAATTAGCAGGGCCATGAAGAAAGAGTTGAAGAAATATGTGGAGGAAATGAGGACTACACTTACAGATGAAAATTGGAAAATTCCAACTACAGTATGTTGGGGCAAAAGAGACCGCTGGTTGAGTTACGATGGAGTCGAAGAATTTTGCAAGGATTCAAAGCATAAGCTTATTGAAATTCCTATGGCAGGCCATCATGTGCAGGAGGATCGTGGCGAAGAACTTGGAGAAGTCATTAAGGGGGTTATGAGAAGAACCCGCTTAAATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

395

Amino Acids

43.89

Weight (kDa)

7.59

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12830
fragaria_vesca	FvH4_2g17500 FvH4_2g17500
malus_domestica	MD10G1148300.v1.1
prunus_persica	Prupe.8G187300_v2.0.a1 Prupe.8G187300_v2.0.a1 Prupe.8G187300_v2.0.a1
pyrus_communis	pycom05g14810 pycom10g12830
rosa_chinensis	RchiOBHm_Chr6g0282231
rosa_laevigata	RLG00000012899
rosa_multiflora	Rmu_sc0014549.1_g000002
rosa_roxburghii	Rroxscaffold_7G00186380
rosa_rugosa	Rorug06G0146500
rosa_samantha	Rh6BG262900 Rh6CG261800 Rh6DG253800
rosa_wichuraiana	Rw6G022460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	42, 837
AccIII	TCCGGA	1 cut(s)	383
AciI	CCGC	4 cut(s)	448, 828, 1027, 1171
AclWI	GGATC	4 cut(s)	132, 785, 798, 1128
AcsI	RAATTY	6 cut(s)	45, 125, 993, 1055, 1089, 1177
AcuI	CTGAAG	1 cut(s)	387
AfiI	CCNNNNNNNGG	4 cut(s)	317, 433, 539, 1100
AgsI	TTSAA	6 cut(s)	50, 179, 380, 943, 1071, 1088
AjnI	CCWGG	1 cut(s)	627
AluBI	AGCT	2 cut(s)	272, 1081
AluI	AGCT	2 cut(s)	272, 1081
Alw26I	GTCTC	1 cut(s)	1017
AlwI	GGATC	4 cut(s)	132, 785, 798, 1128
AlwNI	CAGNNNCTG	1 cut(s)	650
Aor13HI	TCCGGA	1 cut(s)	383
AoxI	GGCC	4 cut(s)	224, 345, 924, 1102
ApeKI	GCWGC	2 cut(s)	278, 666
ApoI	RAATTY	6 cut(s)	45, 125, 993, 1055, 1089, 1177
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AseI	ATTAAT	2 cut(s)	413, 591
Asp700I	GAANNNNTTC	1 cut(s)	214
AspS9I	GGNCC	3 cut(s)	224, 830, 924
AsuHPI	GGTGA	2 cut(s)	197, 305
AsuNHI	GCTAGC	1 cut(s)	662
AvaII	GGWCC	1 cut(s)	830
BamHI	GGATCC	1 cut(s)	790
BbvI	GCAGC	2 cut(s)	265, 678
BccI	CCATC	7 cut(s)	182, 215, 360, 678, 745, 1037, 1113
BceAI	ACGGC	1 cut(s)	160
BcgI	CGANNNNNNTGC	2 cut(s)	1103, 1137
BciT130I	CCWGG	1 cut(s)	629
BciVI	GTATCC	1 cut(s)	626
BcoDI	GTCTC	1 cut(s)	1017
BfaI	CTAG	2 cut(s)	663, 804
BfmI	CTRYAG	1 cut(s)	1002
BfuI	GTATCC	1 cut(s)	626
BisI	GCNGC	2 cut(s)	279, 667
BlsI	GCNGC	2 cut(s)	280, 668
Bme1390I	CCNGG	1 cut(s)	629
Bme18I	GGWCC	1 cut(s)	830
BmgT120I	GGNCC	3 cut(s)	224, 830, 924
BmiI	GGNNCC	2 cut(s)	289, 792
BmrFI	CCNGG	1 cut(s)	629
BmsI	GCATC	3 cut(s)	157, 844, 902
BmtI	GCTAGC	1 cut(s)	666
BpmI	CTGGAG	1 cut(s)	627
BsaI	GGTCTC	1 cut(s)	1017
BsaJI	CCNNGG	2 cut(s)	576, 628
BsaWI	WCCGGW	2 cut(s)	290, 383
Bsc4I	CCNNNNNNNGG	4 cut(s)	317, 433, 539, 1100
Bse1I	ACTGG	1 cut(s)	644
Bse3DI	GCAATG	3 cut(s)	103, 333, 864
BseAI	TCCGGA	1 cut(s)	383
BseBI	CCWGG	1 cut(s)	629
BseDI	CCNNGG	2 cut(s)	576, 628
BseGI	GGATG	3 cut(s)	226, 572, 856
BseLI	CCNNNNNNNGG	4 cut(s)	317, 433, 539, 1100
BseMI	GCAATG	3 cut(s)	103, 333, 864
BseMII	CTCAG	3 cut(s)	356, 446, 800
BseNI	ACTGG	1 cut(s)	644
BseRI	GAGGAG	1 cut(s)	699
BseXI	GCAGC	2 cut(s)	265, 678
BseYI	CCCAGC	1 cut(s)	502
BsgI	GTGCAG	2 cut(s)	60, 1133
BshFI	GGCC	4 cut(s)	226, 347, 926, 1104
BsiSI	CCGG	2 cut(s)	291, 384
BslI	CCNNNNNNNGG	4 cut(s)	317, 433, 539, 1100
BsmAI	GTCTC	1 cut(s)	1017
BsnI	GGCC	4 cut(s)	226, 347, 926, 1104
Bso31I	GGTCTC	1 cut(s)	1017
Bsp13I	TCCGGA	1 cut(s)	383
Bsp143I	GATC	3 cut(s)	137, 790, 1120
BspACI	CCGC	4 cut(s)	448, 828, 1027, 1171
BspANI	GGCC	4 cut(s)	226, 347, 926, 1104
BspCNI	CTCAG	3 cut(s)	355, 445, 799
BspEI	TCCGGA	1 cut(s)	383
BspLI	GGNNCC	2 cut(s)	289, 792
BspOI	GCTAGC	1 cut(s)	666
BspPI	GGATC	4 cut(s)	132, 785, 798, 1128
BspTNI	GGTCTC	1 cut(s)	1017
BsrDI	GCAATG	3 cut(s)	103, 333, 864
BsrI	ACTGG	1 cut(s)	644
BssECI	CCNNGG	2 cut(s)	576, 628
BssMI	GATC	3 cut(s)	137, 790, 1120
BssT1I	CCWWGG	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	629
Bst4CI	ACNGT	1 cut(s)	1006
BstAPI	GCANNNNNTGC	2 cut(s)	332, 911
BstC8I	GCNNGC	3 cut(s)	664, 726, 1102
BstDEI	CTNAG	4 cut(s)	342, 432, 786, 797
BstENI	CCTNNNNNAGG	1 cut(s)	1098
BstF5I	GGATG	3 cut(s)	226, 572, 856
BstKTI	GATC	3 cut(s)	140, 793, 1123
BstMAI	GTCTC	1 cut(s)	1017
BstMBI	GATC	3 cut(s)	137, 790, 1120
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 278, 332, 647, 725, 911
BstNI	CCWGG	1 cut(s)	629
BstNSI	RCATGY	1 cut(s)	728
BstSCI	CCNGG	1 cut(s)	627
BstSFI	CTRYAG	1 cut(s)	1002
BstV1I	GCAGC	2 cut(s)	265, 678
BstX2I	RGATCY	2 cut(s)	137, 790
BstYI	RGATCY	2 cut(s)	137, 790
BsuI	GTATCC	1 cut(s)	626
BsuRI	GGCC	4 cut(s)	226, 347, 926, 1104
BtsCI	GGATG	3 cut(s)	226, 572, 856
BtsIMutI	CAGTG	2 cut(s)	208, 351
Cac8I	GCNNGC	3 cut(s)	664, 726, 1102
CaiI	CAGNNNCTG	1 cut(s)	650
Cfr13I	GGNCC	3 cut(s)	224, 830, 924
CviAII	CATG	5 cut(s)	419, 463, 725, 928, 1109
DdeI	CTNAG	4 cut(s)	342, 432, 786, 797
DpnI	GATC	3 cut(s)	139, 792, 1122
DpnII	GATC	3 cut(s)	137, 790, 1120
Eco130I	CCWWGG	1 cut(s)	576
Eco147I	AGGCCT	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	1017
Eco47I	GGWCC	1 cut(s)	830
Eco57I	CTGAAG	1 cut(s)	387
EcoNI	CCTNNNNNAGG	1 cut(s)	1098
EcoRII	CCWGG	1 cut(s)	627
EcoT14I	CCWWGG	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	576
FaeI	CATG	5 cut(s)	422, 466, 728, 931, 1112
FatI	CATG	5 cut(s)	418, 462, 724, 927, 1108
FauI	CCCGC	1 cut(s)	1178
Fnu4HI	GCNGC	2 cut(s)	279, 667
FokI	GGATG	3 cut(s)	233, 559, 863
Fsp4HI	GCNGC	2 cut(s)	279, 667
FspBI	CTAG	2 cut(s)	663, 804
GluI	GCNGC	2 cut(s)	279, 667
GsaI	CCCAGC	1 cut(s)	506
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	4 cut(s)	226, 347, 926, 1104
HapII	CCGG	2 cut(s)	291, 384
Hin1II	CATG	5 cut(s)	422, 466, 728, 931, 1112
HindIII	AAGCTT	2 cut(s)	270, 1079
HinfI	GANTC	5 cut(s)	338, 380, 581, 1047, 1067
HpaII	CCGG	2 cut(s)	291, 384
HphI	GGTGA	2 cut(s)	197, 305
Hpy188I	TCNGA	5 cut(s)	220, 238, 365, 520, 558
Hpy188III	TCNNGA	3 cut(s)	384, 674, 788
HpyAV	CCTTC	6 cut(s)	33, 243, 292, 411, 438, 743
HpyCH4III	ACNGT	1 cut(s)	1006
HpyCH4V	TGCA	8 cut(s)	77, 135, 326, 857, 905, 914, 1062, 1114
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 278, 332, 647, 725, 911
HpyF3I	CTNAG	4 cut(s)	342, 432, 786, 797
Hsp92II	CATG	5 cut(s)	422, 466, 728, 931, 1112
Kpn2I	TCCGGA	1 cut(s)	383
Kzo9I	GATC	3 cut(s)	137, 790, 1120
LmnI	GCTCC	2 cut(s)	175, 646
Lsp1109I	GCAGC	2 cut(s)	265, 678
LweI	GCATC	3 cut(s)	157, 844, 902
MaeI	CTAG	2 cut(s)	663, 804
MaeIII	GTNAC	2 cut(s)	613, 1037
MalI	GATC	3 cut(s)	139, 792, 1122
MboI	GATC	3 cut(s)	137, 790, 1120
MboII	GAAGA	8 cut(s)	50, 271, 449, 943, 955, 1064, 1142, 1176
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	2 cut(s)	137, 790
MlyI	GAGTC	2 cut(s)	590, 1056
MmeI	TCCRAC	2 cut(s)	165, 1022
MroI	TCCGGA	1 cut(s)	383
MroXI	GAANNNNTTC	1 cut(s)	214
MseI	TTAA	9 cut(s)	249, 413, 591, 606, 654, 701, 908, 1149, 1175
MspA1I	CMGCKG	1 cut(s)	1029
MspI	CCGG	2 cut(s)	291, 384
MspR9I	CCNGG	1 cut(s)	629
MunI	CAATTG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	629
MwoI	GCNNNNNNNGC	6 cut(s)	11, 278, 332, 647, 725, 911
NdeII	GATC	3 cut(s)	137, 790, 1120
NheI	GCTAGC	1 cut(s)	662
NlaIII	CATG	5 cut(s)	422, 466, 728, 931, 1112
NlaIV	GGNNCC	2 cut(s)	289, 792
NmuCI	GTSAC	1 cut(s)	613
NspI	RCATGY	1 cut(s)	728
PaeI	GCATGC	1 cut(s)	728
PceI	AGGCCT	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	1 cut(s)	1047
PdmI	GAANNNNTTC	1 cut(s)	214
PfeI	GAWTC	3 cut(s)	338, 380, 1067
PkrI	GCNGC	2 cut(s)	280, 668
PleI	GAGTC	2 cut(s)	589, 1055
PpsI	GAGTC	2 cut(s)	589, 1055
PshBI	ATTAAT	2 cut(s)	413, 591
PsiI	TTATAA	2 cut(s)	42, 837
Psp6I	CCWGG	1 cut(s)	627
PspFI	CCCAGC	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	627
PspN4I	GGNNCC	2 cut(s)	289, 792
PspPI	GGNCC	3 cut(s)	224, 830, 924
PstNI	CAGNNNCTG	1 cut(s)	650
PsuI	RGATCY	2 cut(s)	137, 790
SaqAI	TTAA	9 cut(s)	249, 413, 591, 606, 654, 701, 908, 1149, 1175
SatI	GCNGC	2 cut(s)	279, 667
Sau3AI	GATC	3 cut(s)	137, 790, 1120
Sau96I	GGNCC	3 cut(s)	224, 830, 924
SchI	GAGTC	2 cut(s)	590, 1056
ScrFI	CCNGG	1 cut(s)	629
SetI	ASST	7 cut(s)	274, 615, 735, 746, 835, 882, 1083
SfaNI	GCATC	3 cut(s)	157, 844, 902
SfcI	CTRYAG	1 cut(s)	1002
SinI	GGWCC	1 cut(s)	830
SphI	GCATGC	1 cut(s)	728
SseBI	AGGCCT	1 cut(s)	347
SsiI	CCGC	4 cut(s)	448, 828, 1027, 1171
SspI	AATATT	1 cut(s)	780
SspMI	CTAG	2 cut(s)	663, 804
StuI	AGGCCT	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	627
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	1 cut(s)	1006
TaqI	TCGA	1 cut(s)	1050
TfiI	GAWTC	3 cut(s)	338, 380, 1067
Tru1I	TTAA	9 cut(s)	249, 413, 591, 606, 654, 701, 908, 1149, 1175
Tru9I	TTAA	9 cut(s)	249, 413, 591, 606, 654, 701, 908, 1149, 1175
TscAI	CASTG	2 cut(s)	208, 358
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	2 cut(s)	278, 666
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	6 cut(s)	255, 407, 609, 857, 944, 996
TspRI	CASTG	2 cut(s)	208, 358
VpaK11BI	GGWCC	1 cut(s)	830
VspI	ATTAAT	2 cut(s)	413, 591
XagI	CCTNNNNNAGG	1 cut(s)	1098
XapI	RAATTY	6 cut(s)	45, 125, 993, 1055, 1089, 1177
XceI	RCATGY	1 cut(s)	728
XmnI	GAANNNNTTC	1 cut(s)	214
XspI	CTAG	2 cut(s)	663, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.