Rmu_sc0014549.1_g000002

alpha/beta hydrolase fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014549.1
OG0013164
Physical Location & Seq
Reverse (-)
3369 .. 6284
2916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014549.1_g000002.1.cds

Sequence Viewer

Length: 1338 bp
atggctacccaagccaaaaccccttctctgtgttacactcacaaaccgcaattctttctccataatcctattcccgcatccatttcactttttggtaatggcaagggccaaaagaagcctctcaatctcagttgcagctccaacggcgatgatgattattacatagatgctgattatcaagtgggtgacggcttctctttcagtggaggaaagtattcagatggacctagcccgtctgatgaatggttcaagcaagggaagatagtgaaagcttatacttctcttggttccggtgagaaggcaaaagatcctatttttggacttgcaatgggtgctgattctcaggcagctgctgatgttttcagatggttttgcgttgaatccggaagtgctgataatccttcagttatactgattcatggcttaccttctcaggcgtactcttaccggaaggttcttccgatactttctaaagcctatcatgccatagcttttgattggttaggctttggattttcagataaaccacaacccaagtatggctttgactatactctcaacgagtatgtgacatccttggagtcctttatcaatgaagttgctgttggaaaggtctcactcgttgtccagggatactttgcaccggcagctgttaaatatgccagcactcatcaggaaaagattgacaacataatactcttaaatccccctctaacagcaaagcatgcaaaccttccctcaaccttgtccatattcagcaactttttgttaggtgaaatcttctctcaggatcctctaagggcaagtgataaaaccttgacaagttgtggaccttatcaaatgaaagaggatgatgccatggtttatagaaatccttacctcacatctggagcttctggttttgcattaaatgcaatcagtagggacatgaagaaagagttgaaggtgaacccttcttctacttgcatgttacttttacagcctatcagagtatacttttcttctgttagagtgactgagctgctgctctacctcacatctggagcttctggttttgcattaaatgcaatcagtagggacatgaagaaagagttgaagaaatatgtggaagaaatgaggacaatgctaacagatgaaaattggaaagttccaactacaatatgttggggcaaaagagaccgctggttgacttatgatggagtggaagatttctgcaaggattcaaagcataagcttatagaaattccaatggcaggccatcacgtccaggaggatcgtggtgaagaacttggacaaatcatttacgaaattatcagaaaaaggagatttggtttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1

Protein Analysis

445

Amino Acids

49.58

Weight (kDa)

7.1

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12830
fragaria_vesca FvH4_2g17500 FvH4_2g17500
malus_domestica MD10G1148300.v1.1
prunus_persica Prupe.8G187300_v2.0.a1 Prupe.8G187300_v2.0.a1 Prupe.8G187300_v2.0.a1
pyrus_communis pycom05g14810 pycom10g12830
rosa_chinensis RchiOBHm_Chr6g0282231
rosa_laevigata RLG00000012899
rosa_multiflora Rmu_sc0014549.1_g000002
rosa_roxburghii Rroxscaffold_7G00186380
rosa_rugosa Rorug06G0146500
rosa_samantha Rh6BG262900 Rh6CG261800 Rh6DG253800
rosa_wichuraiana Rw6G022460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 993
AccIII TCCGGA 1 cut(s) 383
AciI CCGC 3 cut(s) 47, 75, 1180
AclWI GGATC 4 cut(s) 302, 785, 798, 1281
AcsI RAATTY 1 cut(s) 1242
AcuI CTGAAG 1 cut(s) 387
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 3 cut(s) 317, 539, 1253
AgsI TTSAA 5 cut(s) 250, 380, 943, 1096, 1224
AjiI CACGTC 1 cut(s) 1264
AjnI CCWGG 2 cut(s) 627, 1266
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AluBI AGCT 9 cut(s) 138, 272, 350, 491, 650, 893, 1021, 1046, 1234
AluI AGCT 9 cut(s) 138, 272, 350, 491, 650, 893, 1021, 1046, 1234
Alw26I GTCTC 2 cut(s) 619, 1170
AlwI GGATC 4 cut(s) 302, 785, 798, 1281
AlwNI CAGNNNCTG 1 cut(s) 353
Aor13HI TCCGGA 1 cut(s) 383
AoxI GGCC 2 cut(s) 106, 1255
ApeKI GCWGC 6 cut(s) 135, 347, 350, 647, 1021, 1024
ApoI RAATTY 1 cut(s) 1242
Asp700I GAANNNNTTC 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 106, 224, 830
AsuHPI GGTGA 5 cut(s) 197, 305, 785, 958, 1292
AvaII GGWCC 2 cut(s) 224, 830
BamHI GGATCC 1 cut(s) 790
BbvI GCAGC 6 cut(s) 147, 337, 359, 659, 1008, 1011
BccI CCATC 4 cut(s) 215, 360, 1190, 1266
BceAI ACGGC 2 cut(s) 160, 205
BciT130I CCWGG 2 cut(s) 629, 1268
BciVI GTATCC 1 cut(s) 626
BcoDI GTCTC 2 cut(s) 619, 1170
BfaI CTAG 1 cut(s) 228
BfuI GTATCC 1 cut(s) 626
BisI GCNGC 6 cut(s) 136, 348, 351, 648, 1022, 1025
BlsI GCNGC 6 cut(s) 137, 349, 352, 649, 1023, 1026
Bme1390I CCNGG 2 cut(s) 629, 1268
Bme18I GGWCC 2 cut(s) 224, 830
BmgBI CACGTC 1 cut(s) 1264
BmgT120I GGNCC 3 cut(s) 106, 224, 830
BmiI GGNNCC 2 cut(s) 289, 792
BmrFI CCNGG 2 cut(s) 629, 1268
BmsI GCATC 3 cut(s) 86, 157, 844
BpmI CTGGAG 2 cut(s) 909, 1062
BsaI GGTCTC 2 cut(s) 619, 1170
BsaJI CCNNGG 3 cut(s) 576, 628, 858
BsaWI WCCGGW 3 cut(s) 290, 383, 447
BsaXI ACNNNNNCTCC 1 cut(s) 1315
Bsc4I CCNNNNNNNGG 3 cut(s) 317, 539, 1253
Bse118I RCCGGY 1 cut(s) 643
Bse3DI GCAATG 1 cut(s) 333
BseAI TCCGGA 1 cut(s) 383
BseBI CCWGG 2 cut(s) 629, 1268
BseDI CCNNGG 3 cut(s) 576, 628, 858
BseGI GGATG 3 cut(s) 77, 572, 856
BseLI CCNNNNNNNGG 3 cut(s) 317, 539, 1253
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 5 cut(s) 142, 356, 446, 800, 1008
BseXI GCAGC 6 cut(s) 147, 337, 359, 659, 1008, 1011
BshFI GGCC 2 cut(s) 108, 1257
BsiSI CCGG 4 cut(s) 291, 384, 448, 644
BslFI GGGAC 2 cut(s) 938, 1091
BslI CCNNNNNNNGG 3 cut(s) 317, 539, 1253
BsmAI GTCTC 2 cut(s) 619, 1170
BsmFI GGGAC 2 cut(s) 938, 1091
BsnI GGCC 2 cut(s) 108, 1257
Bso31I GGTCTC 2 cut(s) 619, 1170
Bsp13I TCCGGA 1 cut(s) 383
Bsp143I GATC 3 cut(s) 307, 790, 1273
Bsp19I CCATGG 1 cut(s) 858
BspACI CCGC 3 cut(s) 47, 75, 1180
BspANI GGCC 2 cut(s) 108, 1257
BspCNI CTCAG 5 cut(s) 141, 355, 445, 799, 1009
BspEI TCCGGA 1 cut(s) 383
BspLI GGNNCC 2 cut(s) 289, 792
BspPI GGATC 4 cut(s) 302, 785, 798, 1281
BspTNI GGTCTC 2 cut(s) 619, 1170
BsrDI GCAATG 1 cut(s) 333
BsrFI RCCGGY 1 cut(s) 643
BssAI RCCGGY 1 cut(s) 643
BssECI CCNNGG 3 cut(s) 576, 628, 858
BssMI GATC 3 cut(s) 307, 790, 1273
BssNAI GTATAC 1 cut(s) 994
BssT1I CCWWGG 2 cut(s) 576, 858
Bst1107I GTATAC 1 cut(s) 994
Bst2UI CCWGG 2 cut(s) 629, 1268
BstAPI GCANNNNNTGC 4 cut(s) 332, 725, 911, 1064
BstC8I GCNNGC 3 cut(s) 664, 726, 1255
BstDEI CTNAG 6 cut(s) 128, 342, 432, 786, 797, 1017
BstDSI CCRYGG 1 cut(s) 858
BstF5I GGATG 3 cut(s) 77, 572, 856
BstKTI GATC 3 cut(s) 310, 793, 1276
BstMAI GTCTC 2 cut(s) 619, 1170
BstMBI GATC 3 cut(s) 307, 790, 1273
BstMWI GCNNNNNNNGC 8 cut(s) 11, 144, 332, 482, 647, 725, 911, 1064
BstNI CCWGG 2 cut(s) 629, 1268
BstNSI RCATGY 2 cut(s) 728, 970
BstSCI CCNGG 2 cut(s) 627, 1266
BstV1I GCAGC 6 cut(s) 147, 337, 359, 659, 1008, 1011
BstX2I RGATCY 2 cut(s) 307, 790
BstYI RGATCY 2 cut(s) 307, 790
BstZ17I GTATAC 1 cut(s) 994
BsuI GTATCC 1 cut(s) 626
BsuRI GGCC 2 cut(s) 108, 1257
BtgI CCRYGG 1 cut(s) 858
BtgZI GCGATG 1 cut(s) 162
BtrI CACGTC 1 cut(s) 1264
BtsCI GGATG 3 cut(s) 77, 572, 856
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 3 cut(s) 664, 726, 1255
CaiI CAGNNNCTG 1 cut(s) 353
Cfr10I RCCGGY 1 cut(s) 643
Cfr13I GGNCC 3 cut(s) 106, 224, 830
Csp6I GTAC 1 cut(s) 439
CviAII CATG 7 cut(s) 419, 482, 725, 859, 928, 967, 1081
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 6 cut(s) 128, 342, 432, 786, 797, 1017
DpnI GATC 3 cut(s) 309, 792, 1275
DpnII GATC 3 cut(s) 307, 790, 1273
Eco130I CCWWGG 2 cut(s) 576, 858
Eco31I GGTCTC 2 cut(s) 619, 1170
Eco47I GGWCC 2 cut(s) 224, 830
Eco57I CTGAAG 1 cut(s) 387
EcoRII CCWGG 2 cut(s) 627, 1266
EcoT14I CCWWGG 2 cut(s) 576, 858
ErhI CCWWGG 2 cut(s) 576, 858
FaeI CATG 7 cut(s) 422, 485, 728, 862, 931, 970, 1084
FalI AAGNNNNNCTT 2 cut(s) 527, 559
FaqI GGGAC 2 cut(s) 938, 1091
FatI CATG 7 cut(s) 418, 481, 724, 858, 927, 966, 1080
FauI CCCGC 1 cut(s) 82
FblI GTMKAC 1 cut(s) 993
Fnu4HI GCNGC 6 cut(s) 136, 348, 351, 648, 1022, 1025
FokI GGATG 3 cut(s) 64, 559, 863
Fsp4HI GCNGC 6 cut(s) 136, 348, 351, 648, 1022, 1025
FspBI CTAG 1 cut(s) 228
GluI GCNGC 6 cut(s) 136, 348, 351, 648, 1022, 1025
GsuI CTGGAG 2 cut(s) 909, 1062
HaeIII GGCC 2 cut(s) 108, 1257
HapII CCGG 4 cut(s) 291, 384, 448, 644
Hin1II CATG 7 cut(s) 422, 485, 728, 862, 931, 970, 1084
HincII GTYRAC 1 cut(s) 1188
HindII GTYRAC 1 cut(s) 1188
HindIII AAGCTT 2 cut(s) 270, 1232
HinfI GANTC 5 cut(s) 338, 380, 415, 581, 1220
HpaII CCGG 4 cut(s) 291, 384, 448, 644
HphI GGTGA 5 cut(s) 197, 305, 785, 958, 1292
Hpy166II GTNNAC 4 cut(s) 830, 949, 994, 1188
Hpy188I TCNGA 7 cut(s) 220, 238, 365, 462, 520, 989, 1316
Hpy188III TCNNGA 5 cut(s) 384, 674, 788, 888, 1041
Hpy8I GTNNAC 4 cut(s) 830, 949, 994, 1188
HpyAV CCTTC 8 cut(s) 33, 292, 411, 438, 445, 743, 937, 963
HpyCH4IV ACGT 1 cut(s) 1263
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 144, 332, 482, 647, 725, 911, 1064
HpyF3I CTNAG 6 cut(s) 128, 342, 432, 786, 797, 1017
HpySE526I ACGT 1 cut(s) 1263
Hsp92II CATG 7 cut(s) 422, 485, 728, 862, 931, 970, 1084
Kpn2I TCCGGA 1 cut(s) 383
Kzo9I GATC 3 cut(s) 307, 790, 1273
LmnI GCTCC 3 cut(s) 143, 890, 1043
Lsp1109I GCAGC 6 cut(s) 147, 337, 359, 659, 1008, 1011
LweI GCATC 3 cut(s) 86, 157, 844
MaeI CTAG 1 cut(s) 228
MaeII ACGT 1 cut(s) 1263
MaeIII GTNAC 5 cut(s) 32, 185, 568, 969, 1012
MalI GATC 3 cut(s) 309, 792, 1275
MboI GATC 3 cut(s) 307, 790, 1273
MflI RGATCY 2 cut(s) 307, 790
MluCI AATT 4 cut(s) 50, 1138, 1242, 1308
MlyI GAGTC 1 cut(s) 590
MmeI TCCRAC 3 cut(s) 165, 586, 1175
MroI TCCGGA 1 cut(s) 383
MroXI GAANNNNTTC 1 cut(s) 214
MseI TTAA 4 cut(s) 654, 701, 908, 1061
MspA1I CMGCKG 3 cut(s) 350, 650, 1182
MspI CCGG 4 cut(s) 291, 384, 448, 644
MspR9I CCNGG 2 cut(s) 629, 1268
MvaI CCWGG 2 cut(s) 629, 1268
MwoI GCNNNNNNNGC 8 cut(s) 11, 144, 332, 482, 647, 725, 911, 1064
NcoI CCATGG 1 cut(s) 858
NdeII GATC 3 cut(s) 307, 790, 1273
NlaIII CATG 7 cut(s) 422, 485, 728, 862, 931, 970, 1084
NlaIV GGNNCC 2 cut(s) 289, 792
NmuCI GTSAC 3 cut(s) 185, 568, 1012
NspI RCATGY 2 cut(s) 728, 970
PaeI GCATGC 1 cut(s) 728
PdmI GAANNNNTTC 1 cut(s) 214
PfeI GAWTC 4 cut(s) 338, 380, 415, 1220
PfoI TCCNGGA 1 cut(s) 1266
PkrI GCNGC 6 cut(s) 137, 349, 352, 649, 1023, 1026
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
Psp6I CCWGG 2 cut(s) 627, 1266
PspGI CCWGG 2 cut(s) 627, 1266
PspN4I GGNNCC 2 cut(s) 289, 792
PspPI GGNCC 3 cut(s) 106, 224, 830
PstNI CAGNNNCTG 1 cut(s) 353
PsuI RGATCY 2 cut(s) 307, 790
PvuII CAGCTG 2 cut(s) 350, 650
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
SaqAI TTAA 4 cut(s) 654, 701, 908, 1061
SatI GCNGC 6 cut(s) 136, 348, 351, 648, 1022, 1025
Sau3AI GATC 3 cut(s) 307, 790, 1273
Sau96I GGNCC 3 cut(s) 106, 224, 830
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 2 cut(s) 629, 1268
SfaNI GCATC 3 cut(s) 86, 157, 844
SinI GGWCC 2 cut(s) 224, 830
SphI GCATGC 1 cut(s) 728
Sse9I AATT 4 cut(s) 50, 1138, 1242, 1308
SsiI CCGC 3 cut(s) 47, 75, 1180
SspMI CTAG 1 cut(s) 228
StyD4I CCNGG 2 cut(s) 627, 1266
StyI CCWWGG 2 cut(s) 576, 858
TaiI ACGT 1 cut(s) 1266
TasI AATT 4 cut(s) 50, 1138, 1242, 1308
TfiI GAWTC 4 cut(s) 338, 380, 415, 1220
Tru1I TTAA 4 cut(s) 654, 701, 908, 1061
Tru9I TTAA 4 cut(s) 654, 701, 908, 1061
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 3 cut(s) 185, 568, 1012
TseI GCWGC 6 cut(s) 135, 347, 350, 647, 1021, 1024
Tsp45I GTSAC 3 cut(s) 185, 568, 1012
TspDTI ATGAA 7 cut(s) 255, 407, 609, 857, 944, 1097, 1149
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 2 cut(s) 224, 830
XapI RAATTY 1 cut(s) 1242
XceI RCATGY 2 cut(s) 728, 970
XcmI CCANNNNNNNNNTGG 1 cut(s) 1274
XmiI GTMKAC 1 cut(s) 993
XmnI GAANNNNTTC 1 cut(s) 214
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.