Rroxscaffold_7G00186380

alpha/beta hydrolase fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013164
Physical Location & Seq
Reverse (-)
25731410 .. 25734078
2669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00186380.1

Sequence Viewer

Length: 1158 bp
ATGGCTACCCAAGCCAAAACCCCTTCTCTGTGTTACACTCACAAACTGCAATTCTTTCTCCATAATCCTATTCCTGCATCCATTTCACTTTTTGGTAATGGCAAGGGCCAAAAGAAGCCTCTCAATCTCAGTTGCAGCTCCAACGGCGATGATGATTATTACATAGATGCTGATTATCAAGTGGGTGACGGCTTCTCTTTCAGTGGAGGAAAGTATTCAGATGGACCTAGCCCTTCTGATGAATGGTTCAAGCAAGGGAAGATAGTGAAAGCTTATACTTCTCTTGGTTCCGGTGAGAAGGCAAAAGATCCTATATTTGGACTTGCAATGGGTGCTGATTCACAGGCAGCTGCTGATGTTTTCAGATGGTTTTGCGTTGAATCCGGGAGTGCTGATAATCCTTCAGTTATACTGATTCATGGCTTACCTTCTCAGGCATACTCTTACCGCAAGGTTCTTCCGATACTTTCTAAAGCCTATCATGCCATTGCTTTTGATTGGTTAGGCTTTGGATTTTCAGATAAACCACAACCCAAGTATGGCTTTGACTATACTCTCAACGAGTATGTGACATCCTTGGAGTCCTTCATCAATGAAGTTGCTGTTGGAAAGGTCTCACTCGTTGTCCAGGGATACTTTGCACCGGCAGCTGTTAAATATGCCAGCACTCATCAGGAAAAGATTGACAACATAATACTCTTAAATCCCCCTCTAACAGCAAAGCATGCAAACCTTCCCTCAACCTTGTCCATATTCAGCAACTTTTTGTTAGGTGAAATCTTCTCTCAGGATCCTCTGAGGGCAAGTGATAAAACCTTGACAAGTTGCGGACCTTATCAAATGAAAGAGGATGATGCCATGGTTTATAGAAATCCTTACCTCACATCTGGAGCTTCAGGTTTTGCATTAAATGCAATCAGTAGGGACATGAAGAAAGAGTTGAAGAAATATGTGGAAGAAATGAGGACAATACTAACAAATGAAAATTGGAAAGTTCCAACTACAATATGTTGGGGCAAAAGAGACCGCTGGTTGACTTATGATGGAGTGGAAGATTTCTGCAAGGATTCAAAGCATAAGCTTATAGAAATTCCAATGGTACTGTCTTCTTTTATATATGACACATCCAGGAGAACTGTTCGCGTTACATACACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1

Protein Analysis

385

Amino Acids

42.87

Weight (kDa)

7.03

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 134 - 365 1.6e-15 alpha/beta hydrolase fold
Hydrolase_4 PF12146 135 - 360 1.3e-08 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12830
fragaria_vesca FvH4_2g17500 FvH4_2g17500
malus_domestica MD10G1148300.v1.1
prunus_persica Prupe.8G187300_v2.0.a1 Prupe.8G187300_v2.0.a1 Prupe.8G187300_v2.0.a1
pyrus_communis pycom05g14810 pycom10g12830
rosa_chinensis RchiOBHm_Chr6g0282231
rosa_laevigata RLG00000012899
rosa_multiflora Rmu_sc0014549.1_g000002
rosa_roxburghii Rroxscaffold_7G00186380
rosa_rugosa Rorug06G0146500
rosa_samantha Rh6BG262900 Rh6CG261800 Rh6DG253800
rosa_wichuraiana Rw6G022460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1143
AciI CCGC 3 cut(s) 448, 828, 1027
AclWI GGATC 3 cut(s) 302, 785, 798
AcsI RAATTY 1 cut(s) 1089
AcuI CTGAAG 2 cut(s) 387, 879
AfaI GTAC 1 cut(s) 1101
AfiI CCNNNNNNNGG 2 cut(s) 317, 539
AgsI TTSAA 4 cut(s) 250, 380, 943, 1071
AjnI CCWGG 2 cut(s) 627, 1127
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AluBI AGCT 6 cut(s) 138, 272, 350, 650, 893, 1081
AluI AGCT 6 cut(s) 138, 272, 350, 650, 893, 1081
Alw26I GTCTC 2 cut(s) 619, 1017
AlwI GGATC 3 cut(s) 302, 785, 798
AlwNI CAGNNNCTG 1 cut(s) 353
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 4 cut(s) 135, 347, 350, 647
ApoI RAATTY 1 cut(s) 1089
Asp700I GAANNNNTTC 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 106, 224, 830
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 3 cut(s) 197, 305, 785
AvaII GGWCC 2 cut(s) 224, 830
BamHI GGATCC 1 cut(s) 790
BbsI GAAGAC 1 cut(s) 1098
BbvI GCAGC 4 cut(s) 147, 337, 359, 659
BccI CCATC 3 cut(s) 215, 360, 1037
BceAI ACGGC 2 cut(s) 160, 205
BciT130I CCWGG 2 cut(s) 629, 1129
BciVI GTATCC 1 cut(s) 626
BcnI CCSGG 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 619, 1017
BfaI CTAG 1 cut(s) 228
BfuI GTATCC 1 cut(s) 626
BisI GCNGC 4 cut(s) 136, 348, 351, 648
BlsI GCNGC 4 cut(s) 137, 349, 352, 649
Bme1390I CCNGG 3 cut(s) 385, 629, 1129
Bme18I GGWCC 2 cut(s) 224, 830
BmgT120I GGNCC 3 cut(s) 106, 224, 830
BmiI GGNNCC 2 cut(s) 289, 792
BmrFI CCNGG 3 cut(s) 385, 629, 1129
BmsI GCATC 3 cut(s) 86, 157, 844
BpiI GAAGAC 1 cut(s) 1098
BpmI CTGGAG 1 cut(s) 909
BpuMI CCSGG 1 cut(s) 385
BsaI GGTCTC 2 cut(s) 619, 1017
BsaJI CCNNGG 3 cut(s) 576, 628, 858
BsaWI WCCGGW 1 cut(s) 290
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 539
Bse118I RCCGGY 1 cut(s) 643
Bse3DI GCAATG 2 cut(s) 333, 486
BseBI CCWGG 2 cut(s) 629, 1129
BseDI CCNNGG 3 cut(s) 576, 628, 858
BseGI GGATG 4 cut(s) 77, 572, 856, 1124
BseLI CCNNNNNNNGG 2 cut(s) 317, 539
BseMI GCAATG 2 cut(s) 333, 486
BseMII CTCAG 4 cut(s) 142, 446, 788, 800
BseXI GCAGC 4 cut(s) 147, 337, 359, 659
Bsh1236I CGCG 1 cut(s) 1143
BshFI GGCC 1 cut(s) 108
BsiSI CCGG 3 cut(s) 291, 384, 644
BslFI GGGAC 1 cut(s) 938
BslI CCNNNNNNNGG 2 cut(s) 317, 539
BsmAI GTCTC 2 cut(s) 619, 1017
BsmFI GGGAC 1 cut(s) 938
BsnI GGCC 1 cut(s) 108
Bso31I GGTCTC 2 cut(s) 619, 1017
Bsp143I GATC 2 cut(s) 307, 790
Bsp19I CCATGG 1 cut(s) 858
BspACI CCGC 3 cut(s) 448, 828, 1027
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 4 cut(s) 141, 445, 789, 799
BspFNI CGCG 1 cut(s) 1143
BspLI GGNNCC 2 cut(s) 289, 792
BspPI GGATC 3 cut(s) 302, 785, 798
BspTNI GGTCTC 2 cut(s) 619, 1017
BsrDI GCAATG 2 cut(s) 333, 486
BsrFI RCCGGY 1 cut(s) 643
BssAI RCCGGY 1 cut(s) 643
BssECI CCNNGG 3 cut(s) 576, 628, 858
BssMI GATC 2 cut(s) 307, 790
BssT1I CCWWGG 2 cut(s) 576, 858
Bst2UI CCWGG 2 cut(s) 629, 1129
Bst4CI ACNGT 2 cut(s) 1104, 1138
BstAPI GCANNNNNTGC 3 cut(s) 332, 725, 911
BstC8I GCNNGC 2 cut(s) 664, 726
BstDEI CTNAG 4 cut(s) 128, 432, 786, 797
BstDSI CCRYGG 1 cut(s) 858
BstF5I GGATG 4 cut(s) 77, 572, 856, 1124
BstFNI CGCG 1 cut(s) 1143
BstKTI GATC 2 cut(s) 310, 793
BstMAI GTCTC 2 cut(s) 619, 1017
BstMBI GATC 2 cut(s) 307, 790
BstMWI GCNNNNNNNGC 7 cut(s) 11, 144, 332, 482, 647, 725, 911
BstNI CCWGG 2 cut(s) 629, 1129
BstNSI RCATGY 1 cut(s) 728
BstSCI CCNGG 3 cut(s) 383, 627, 1127
BstUI CGCG 1 cut(s) 1143
BstV1I GCAGC 4 cut(s) 147, 337, 359, 659
BstV2I GAAGAC 1 cut(s) 1098
BstX2I RGATCY 2 cut(s) 307, 790
BstYI RGATCY 2 cut(s) 307, 790
BsuI GTATCC 1 cut(s) 626
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 858
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 4 cut(s) 77, 572, 856, 1124
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 2 cut(s) 664, 726
CaiI CAGNNNCTG 1 cut(s) 353
Cfr10I RCCGGY 1 cut(s) 643
Cfr13I GGNCC 3 cut(s) 106, 224, 830
Csp6I GTAC 1 cut(s) 1100
CviAII CATG 5 cut(s) 419, 482, 725, 859, 928
CviQI GTAC 1 cut(s) 1100
DdeI CTNAG 4 cut(s) 128, 432, 786, 797
DpnI GATC 2 cut(s) 309, 792
DpnII GATC 2 cut(s) 307, 790
Eco130I CCWWGG 2 cut(s) 576, 858
Eco31I GGTCTC 2 cut(s) 619, 1017
Eco47I GGWCC 2 cut(s) 224, 830
Eco57I CTGAAG 2 cut(s) 387, 879
EcoRII CCWGG 2 cut(s) 627, 1127
EcoT14I CCWWGG 2 cut(s) 576, 858
ErhI CCWWGG 2 cut(s) 576, 858
FaeI CATG 5 cut(s) 422, 485, 728, 862, 931
FalI AAGNNNNNCTT 2 cut(s) 527, 559
FaqI GGGAC 1 cut(s) 938
FatI CATG 5 cut(s) 418, 481, 724, 858, 927
Fnu4HI GCNGC 4 cut(s) 136, 348, 351, 648
FokI GGATG 4 cut(s) 64, 559, 863, 1111
Fsp4HI GCNGC 4 cut(s) 136, 348, 351, 648
FspBI CTAG 1 cut(s) 228
GluI GCNGC 4 cut(s) 136, 348, 351, 648
GsuI CTGGAG 1 cut(s) 909
HaeIII GGCC 1 cut(s) 108
HapII CCGG 3 cut(s) 291, 384, 644
Hin1II CATG 5 cut(s) 422, 485, 728, 862, 931
HincII GTYRAC 1 cut(s) 1035
HindII GTYRAC 1 cut(s) 1035
HindIII AAGCTT 2 cut(s) 270, 1079
HinfI GANTC 5 cut(s) 338, 380, 415, 581, 1067
HpaII CCGG 3 cut(s) 291, 384, 644
HphI GGTGA 3 cut(s) 197, 305, 785
Hpy166II GTNNAC 1 cut(s) 1035
Hpy188I TCNGA 6 cut(s) 220, 238, 365, 462, 520, 798
Hpy188III TCNNGA 3 cut(s) 674, 788, 888
Hpy8I GTNNAC 1 cut(s) 1035
HpyAV CCTTC 7 cut(s) 33, 243, 292, 411, 438, 595, 743
HpyCH4III ACNGT 2 cut(s) 1104, 1138
HpyCH4V TGCA 9 cut(s) 49, 77, 135, 326, 641, 728, 905, 914, 1062
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 144, 332, 482, 647, 725, 911
HpyF3I CTNAG 4 cut(s) 128, 432, 786, 797
Hsp92II CATG 5 cut(s) 422, 485, 728, 862, 931
Kzo9I GATC 2 cut(s) 307, 790
LmnI GCTCC 2 cut(s) 143, 890
Lsp1109I GCAGC 4 cut(s) 147, 337, 359, 659
LweI GCATC 3 cut(s) 86, 157, 844
MaeI CTAG 1 cut(s) 228
MaeIII GTNAC 4 cut(s) 32, 185, 568, 1144
MalI GATC 2 cut(s) 309, 792
MboI GATC 2 cut(s) 307, 790
MboII GAAGA 8 cut(s) 271, 449, 772, 943, 955, 968, 1064, 1098
MflI RGATCY 2 cut(s) 307, 790
MluCI AATT 3 cut(s) 50, 985, 1089
MlyI GAGTC 1 cut(s) 590
MmeI TCCRAC 3 cut(s) 165, 586, 1022
MnlI CCTC 9 cut(s) 129, 200, 720, 748, 792, 804, 841, 890, 957
MroXI GAANNNNTTC 1 cut(s) 214
MseI TTAA 3 cut(s) 654, 701, 908
MspA1I CMGCKG 3 cut(s) 350, 650, 1029
MspI CCGG 3 cut(s) 291, 384, 644
MspR9I CCNGG 3 cut(s) 385, 629, 1129
MvaI CCWGG 2 cut(s) 629, 1129
MvnI CGCG 1 cut(s) 1143
MwoI GCNNNNNNNGC 7 cut(s) 11, 144, 332, 482, 647, 725, 911
NciI CCSGG 1 cut(s) 385
NcoI CCATGG 1 cut(s) 858
NdeII GATC 2 cut(s) 307, 790
NlaIII CATG 5 cut(s) 422, 485, 728, 862, 931
NlaIV GGNNCC 2 cut(s) 289, 792
NmuCI GTSAC 2 cut(s) 185, 568
NspI RCATGY 1 cut(s) 728
PaeI GCATGC 1 cut(s) 728
PdmI GAANNNNTTC 1 cut(s) 214
PfeI GAWTC 4 cut(s) 338, 380, 415, 1067
PfoI TCCNGGA 2 cut(s) 383, 1127
PkrI GCNGC 4 cut(s) 137, 349, 352, 649
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
Psp6I CCWGG 2 cut(s) 627, 1127
PspGI CCWGG 2 cut(s) 627, 1127
PspN4I GGNNCC 2 cut(s) 289, 792
PspPI GGNCC 3 cut(s) 106, 224, 830
PstNI CAGNNNCTG 1 cut(s) 353
PsuI RGATCY 2 cut(s) 307, 790
PvuII CAGCTG 2 cut(s) 350, 650
RsaI GTAC 1 cut(s) 1101
RsaNI GTAC 1 cut(s) 1100
SaqAI TTAA 3 cut(s) 654, 701, 908
SatI GCNGC 4 cut(s) 136, 348, 351, 648
Sau3AI GATC 2 cut(s) 307, 790
Sau96I GGNCC 3 cut(s) 106, 224, 830
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 3 cut(s) 385, 629, 1129
SfaNI GCATC 3 cut(s) 86, 157, 844
SinI GGWCC 2 cut(s) 224, 830
SphI GCATGC 1 cut(s) 728
Sse9I AATT 3 cut(s) 50, 985, 1089
SsiI CCGC 3 cut(s) 448, 828, 1027
SspMI CTAG 1 cut(s) 228
StyD4I CCNGG 3 cut(s) 383, 627, 1127
StyI CCWWGG 2 cut(s) 576, 858
TaaI ACNGT 2 cut(s) 1104, 1138
TasI AATT 3 cut(s) 50, 985, 1089
TfiI GAWTC 4 cut(s) 338, 380, 415, 1067
Tru1I TTAA 3 cut(s) 654, 701, 908
Tru9I TTAA 3 cut(s) 654, 701, 908
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 2 cut(s) 185, 568
TseI GCWGC 4 cut(s) 135, 347, 350, 647
Tsp45I GTSAC 2 cut(s) 185, 568
TspDTI ATGAA 7 cut(s) 255, 407, 577, 609, 857, 944, 996
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 2 cut(s) 224, 830
XapI RAATTY 1 cut(s) 1089
XceI RCATGY 1 cut(s) 728
XmnI GAANNNNTTC 1 cut(s) 214
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.