Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010122

Physical Location & Seq

Genomic Coordinates Reverse (-)

19753896 .. 19758953

Gene Structure 5058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G215000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCAACCCTGCAGTCACTTGCATTCTCCTCTCCAGTCTCACACTGTCTGCAGCAACCACGCCTTCATTCTGGCTTGTTATCTTGGACTGTCCATAGAAGTGCAAAGTCCACGTTCAATGGTCAATCTTTGCACGTGTCTCGTCCCCAATGGGCGCCAATAAGACGGTGTACTCAAGCATCTAGATCTATTACAATGATGGTCAAACCAAAAATTCAGTTTATCCAAGGAACTGATGAACAGACAATACCAGATGTGAGGCTAACTAAATCAAAAGATGGTACAAATGGCGTGGCTATATTCAAGTTTGAGCAACCTTCTGTTTTTGACTCCTCTGGTGAATTTGGTGACATCACTGGATTTTACATGATTGATGAAGAAGGTGTTCTTCAATCAGTTGATGTCAATGCCAAATTTGTCAATGGAAAGCCTGCAGGAATTGAAGCAAAGTATACGATGCGGACTCCGAGAGATTGGGACAGATTCATGAGATTCATGGAACGCTATGCTAATGATAATGGCTTGCAATTCATCAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Psb28

Protein Analysis

181

Amino Acids

20.38

Weight (kDa)

9.51

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28660 AT4G28660
fragaria_vesca	FvH4_2g20470
malus_domestica	MD05G1188500.v1.1 MD10G1176000.v1.1
prunus_persica	Prupe.8G215000_v2.0.a1 Prupe.8G215000_v2.0.a1 Prupe.8G215000_v2.0.a1
pyrus_communis	pycom05g17310 pycom10g15160
rosa_chinensis	RchiOBHm_Chr6g0286561
rosa_laevigata	RLG00000012557
rosa_multiflora	Rmu_sc0004628.1_g000014
rosa_roxburghii	Rroxscaffold_7G00182180
rosa_rugosa	Rorug06G0181000 Rorug06G0181100
rosa_samantha	Rh6AG293800 Rh6BG297100 Rh6CG297400 Rh6DG289400
rosa_wichuraiana	Rw6G025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AccI	GTMKAC	1 cut(s)	452
AciI	CCGC	1 cut(s)	460
AcsI	RAATTY	3 cut(s)	213, 341, 413
AcvI	CACGTG	1 cut(s)	136
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	2 cut(s)	172, 283
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	4 cut(s)	118, 304, 392, 443
Alw26I	GTCTC	2 cut(s)	43, 144
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	3 cut(s)	213, 341, 413
Asp700I	GAANNNNTTC	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	350, 359
BanI	GGYRCC	1 cut(s)	154
BbrPI	CACGTG	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	2 cut(s)	193, 272
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BcoDI	GTCTC	2 cut(s)	43, 144
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	3 cut(s)	11, 50, 432
BfoI	RGCGCY	1 cut(s)	158
BglII	AGATCT	1 cut(s)	185
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	156
BmsI	GCATC	2 cut(s)	188, 447
BpmI	CTGGAG	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	159
BsaAI	YACGTR	1 cut(s)	136
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	226
Bse1I	ACTGG	2 cut(s)	35, 361
BseDI	CCNNGG	1 cut(s)	226
BseNI	ACTGG	2 cut(s)	35, 361
BseRI	GAGGAG	2 cut(s)	19, 322
BseXI	GCAGC	1 cut(s)	64
BshNI	GGYRCC	1 cut(s)	154
BslFI	GGGAC	2 cut(s)	129, 491
BsmAI	GTCTC	2 cut(s)	43, 144
BsmFI	GGGAC	2 cut(s)	129, 491
BsmI	GAATGC	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	185
BspACI	CCGC	1 cut(s)	460
BspHI	TCATGA	1 cut(s)	486
BspLI	GGNNCC	1 cut(s)	156
BspMAI	CTGCAG	3 cut(s)	15, 54, 436
BspT107I	GGYRCC	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	35, 361
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	1 cut(s)	185
BssNAI	GTATAC	1 cut(s)	453
BssNI	GRCGYC	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	226
Bst1107I	GTATAC	1 cut(s)	453
Bst4CI	ACNGT	3 cut(s)	47, 91, 168
BstACI	GRCGYC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	2 cut(s)	432, 524
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	1 cut(s)	188
BstMAI	GTCTC	2 cut(s)	43, 144
BstMBI	GATC	1 cut(s)	185
BstSFI	CTRYAG	3 cut(s)	11, 50, 432
BstV1I	GCAGC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BstZ17I	GTATAC	1 cut(s)	453
BtsIMutI	CAGTG	2 cut(s)	43, 354
Cac8I	GCNNGC	2 cut(s)	432, 524
CciI	TCATGA	1 cut(s)	486
CfoI	GCGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	171, 282
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	3 cut(s)	367, 487, 496
CviJI	RGCY	5 cut(s)	75, 262, 296, 430, 522
CviKI_1	RGCY	5 cut(s)	75, 262, 296, 430, 522
CviQI	GTAC	2 cut(s)	171, 282
DinI	GGCGCC	1 cut(s)	156
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	226
Eco72I	CACGTG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	226
EgeI	GGCGCC	1 cut(s)	156
EheI	GGCGCC	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	3 cut(s)	370, 490, 499
FaiI	YATR	7 cut(s)	96, 299, 368, 453, 488, 497, 507
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FaqI	GGGAC	2 cut(s)	129, 491
FatI	CATG	3 cut(s)	366, 486, 495
FblI	GTMKAC	1 cut(s)	452
Fnu4HI	GCNGC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	18
HaeII	RGCGCY	1 cut(s)	158
HhaI	GCGC	1 cut(s)	157
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	3 cut(s)	370, 490, 499
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HinfI	GANTC	4 cut(s)	329, 463, 483, 492
HphI	GGTGA	2 cut(s)	350, 359
Hpy166II	GTNNAC	3 cut(s)	111, 171, 453
Hpy188I	TCNGA	1 cut(s)	468
Hpy188III	TCNNGA	2 cut(s)	183, 487
Hpy8I	GTNNAC	3 cut(s)	111, 171, 453
HpyAV	CCTTC	3 cut(s)	74, 327, 374
HpyCH4III	ACNGT	3 cut(s)	47, 91, 168
HpyCH4IV	ACGT	2 cut(s)	113, 135
HpyCH4V	TGCA	7 cut(s)	13, 23, 52, 104, 133, 434, 526
HpySE526I	ACGT	2 cut(s)	113, 135
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	3 cut(s)	370, 490, 499
HspAI	GCGC	1 cut(s)	155
KasI	GGCGCC	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	185
LpnPI	CCDG	8 cut(s)	23, 48, 57, 264, 321, 342, 420, 444
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	2 cut(s)	188, 447
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	2 cut(s)	113, 135
MaeIII	GTNAC	2 cut(s)	15, 347
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	2 cut(s)	380, 389
MflI	RGATCY	1 cut(s)	185
MluCI	AATT	5 cut(s)	213, 341, 413, 438, 527
Mly113I	GGCGCC	1 cut(s)	155
MlyI	GAGTC	2 cut(s)	323, 457
MnlI	CCTC	3 cut(s)	40, 252, 343
MroXI	GAANNNNTTC	1 cut(s)	384
MslI	CAYNNNNRTG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	23
NarI	GGCGCC	1 cut(s)	155
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	3 cut(s)	370, 490, 499
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	2 cut(s)	15, 347
PagI	TCATGA	1 cut(s)	486
PctI	GAATGC	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	483, 492
PkrI	GCNGC	1 cut(s)	54
PleI	GAGTC	2 cut(s)	323, 457
PluTI	GGCGCC	1 cut(s)	158
PmaCI	CACGTG	1 cut(s)	136
PmlI	CACGTG	1 cut(s)	136
PpsI	GAGTC	2 cut(s)	323, 457
Ppu21I	YACGTR	1 cut(s)	136
PspCI	CACGTG	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	156
PsrI	GAACNNNNNNTAC	2 cut(s)	231, 263
PstI	CTGCAG	3 cut(s)	15, 54, 436
PsuI	RGATCY	1 cut(s)	185
RsaI	GTAC	2 cut(s)	172, 283
RsaNI	GTAC	2 cut(s)	171, 282
RseI	CAYNNNNRTG	1 cut(s)	99
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	1 cut(s)	185
SbfI	CCTGCAGG	1 cut(s)	436
SchI	GAGTC	2 cut(s)	323, 457
SdaI	CCTGCAGG	1 cut(s)	436
SetI	ASST	4 cut(s)	116, 138, 319, 385
SfaNI	GCATC	2 cut(s)	188, 447
SfcI	CTRYAG	3 cut(s)	11, 50, 432
SfoI	GGCGCC	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse8387I	CCTGCAGG	1 cut(s)	436
Sse9I	AATT	5 cut(s)	213, 341, 413, 438, 527
SsiI	CCGC	1 cut(s)	460
SspDI	GGCGCC	1 cut(s)	154
SspMI	CTAG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	3 cut(s)	47, 91, 168
TaiI	ACGT	2 cut(s)	116, 138
TasI	AATT	5 cut(s)	213, 341, 413, 438, 527
TatI	WGTACW	1 cut(s)	170
TfiI	GAWTC	2 cut(s)	483, 492
TscAI	CASTG	2 cut(s)	50, 361
TseFI	GTSAC	2 cut(s)	15, 347
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	2 cut(s)	15, 347
TspDTI	ATGAA	6 cut(s)	56, 252, 390, 475, 484, 520
TspRI	CASTG	2 cut(s)	50, 361
XapI	RAATTY	3 cut(s)	213, 341, 413
XbaI	TCTAGA	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.