RchiOBHm_Chr6g0286561

Photosystem II reaction center PSB28 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010122
Physical Location & Seq
Reverse (-)
50024117 .. 50025644
1528 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25704

Sequence Viewer

Length: 315 bp
ATGGCAACCTTGCAGTCTTCACTTGCATTCTCCTCTCCAGCCTCCCACTGTCTCCAGCAATCACGCTCTCATTCTGGGTTGTTATCTTGGGCGGTTCATAGAAGTGCAGAGTCCACATTCAATGGCCAGTCTTTGCGCATTTCTCGGCCCCAATGGGTGCCACTAAGGCGGTCTAGTCAAGCATCTAGATCCATCAAAATGATGGCAAAACCAAAAATTCAGTTTATCCAAGGAACTGATGAGCAGACAATACCAGATGTGAGGCTAACCAAATCAAAAGATGGTACCAATGGCGTGGCTATATTCAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
Psb28

Protein Analysis

104

Amino Acids

11.53

Weight (kDa)

11.5

Isoelectric Point (pI)

82.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Psb28 PF03912 73 - 103 2e-07 Psb28 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 137
Acc65I GGTACC 1 cut(s) 284
AccB1I GGYRCC 2 cut(s) 157, 284
AciI CCGC 2 cut(s) 92, 169
AclWI GGATC 1 cut(s) 183
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 1 cut(s) 216
AfaI GTAC 1 cut(s) 286
AgsI TTSAA 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 183
AoxI GGCC 2 cut(s) 124, 146
ApoI RAATTY 1 cut(s) 216
Asp718I GGTACC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 147
BalI TGGCCA 1 cut(s) 126
BanI GGYRCC 2 cut(s) 157, 284
BbsI GAAGAC 1 cut(s) 9
BccI CCATC 3 cut(s) 196, 200, 275
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 2 cut(s) 174, 186
BglI GCCNNNNNGGC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 3 cut(s) 149, 159, 286
BmsI GCATC 1 cut(s) 191
BpiI GAAGAC 1 cut(s) 9
BpmI CTGGAG 2 cut(s) 21, 38
BsaJI CCNNGG 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 126
BshFI GGCC 2 cut(s) 126, 148
BshNI GGYRCC 2 cut(s) 157, 284
BsmAI GTCTC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 2 cut(s) 126, 148
Bsp143I GATC 1 cut(s) 188
BspACI CCGC 2 cut(s) 92, 169
BspANI GGCC 2 cut(s) 126, 148
BspLI GGNNCC 3 cut(s) 149, 159, 286
BspPI GGATC 1 cut(s) 183
BspT107I GGYRCC 2 cut(s) 157, 284
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 164
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 1 cut(s) 191
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 188
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 9
BstX2I RGATCY 1 cut(s) 188
BstXI CCANNNNNNTGG 1 cut(s) 295
BstYI RGATCY 1 cut(s) 188
BsuRI GGCC 2 cut(s) 126, 148
BtsIMutI CAGTG 1 cut(s) 46
CfoI GCGC 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 285
CviJI RGCY 5 cut(s) 41, 126, 148, 265, 299
CviKI_1 RGCY 5 cut(s) 41, 126, 148, 265, 299
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 1 cut(s) 164
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 229
FaiI YATR 2 cut(s) 99, 302
FspBI CTAG 2 cut(s) 174, 186
FspI TGCGCA 1 cut(s) 137
GlaI GCGC 1 cut(s) 137
GsuI CTGGAG 2 cut(s) 21, 38
HaeIII GGCC 2 cut(s) 126, 148
HhaI GCGC 1 cut(s) 138
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HinfI GANTC 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 114
Hpy188III TCNNGA 2 cut(s) 186, 307
Hpy8I GTNNAC 1 cut(s) 114
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 3 cut(s) 13, 26, 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 164
HspAI GCGC 1 cut(s) 136
KpnI GGTACC 1 cut(s) 288
Kzo9I GATC 1 cut(s) 188
LpnPI CCDG 6 cut(s) 51, 60, 68, 140, 267, 292
LweI GCATC 1 cut(s) 191
MaeI CTAG 2 cut(s) 174, 186
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MboII GAAGA 1 cut(s) 9
MflI RGATCY 1 cut(s) 188
MlsI TGGCCA 1 cut(s) 126
MluCI AATT 2 cut(s) 216, 310
MluNI TGGCCA 1 cut(s) 126
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 3 cut(s) 43, 52, 255
Mox20I TGGCCA 1 cut(s) 126
MscI TGGCCA 1 cut(s) 126
MslI CAYNNNNRTG 2 cut(s) 102, 197
Msp20I TGGCCA 1 cut(s) 126
Mva1269I GAATGC 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeII GATC 1 cut(s) 188
NlaIV GGNNCC 3 cut(s) 149, 159, 286
NmeAIII GCCGAG 1 cut(s) 124
NsbI TGCGCA 1 cut(s) 137
PctI GAATGC 1 cut(s) 26
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PspN4I GGNNCC 3 cut(s) 149, 159, 286
PspPI GGNCC 1 cut(s) 147
PsuI RGATCY 1 cut(s) 188
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
RseI CAYNNNNRTG 2 cut(s) 102, 197
Sau3AI GATC 1 cut(s) 188
Sau96I GGNCC 1 cut(s) 147
SchI GAGTC 1 cut(s) 119
SetI ASST 1 cut(s) 11
SfaNI GCATC 1 cut(s) 191
SmiMI CAYNNNNRTG 2 cut(s) 102, 197
Sse9I AATT 2 cut(s) 216, 310
SsiI CCGC 2 cut(s) 92, 169
SspMI CTAG 2 cut(s) 174, 186
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 50
TasI AATT 2 cut(s) 216, 310
TscAI CASTG 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 86
TspRI CASTG 1 cut(s) 53
XapI RAATTY 1 cut(s) 216
XbaI TCTAGA 1 cut(s) 185
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XspI CTAG 2 cut(s) 174, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.