Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004628.1

Orthogroup ID

OG0010122

Physical Location & Seq

Genomic Coordinates Reverse (-)

36103 .. 38527

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004628.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgatgcgtggggtggtacagcaactccagatagttctgatgatggtggagagggtggaagcggaacaggtggtggaggtgaaagatatgaatatggacaatcttctgtggatgaaggattcaaatttacctgtgaaggtaattttgatcatgtcacccaagatgaagaccacagattgtgcaatggcaaccttgcagtcttcacttgcattctcctctccagcctcccactgtctccagcaatcacgctctcattctgggttgttatcttgggcggttcatagaagtgcagagtccacattcaatggccagtctttgcgcatttctcggccccaatgggcgccactaaggtggtctagtcaagcatctagatccatcaaaatgatggcaaaaccaaaaattcagtttatccaaggaactgatgagcagacaataccagatgtgaggctaaccaaatcaaaagatggtaccaatggcgtggctatattcaggtttgagcagccttctgttttcgactcatctggcgaatttggtgatatcactggcttttacatgattgatgaagaaggggtcatttcatctgttgatgttaacgcaaaatttgtcaatggaaagcctgcaggaattgaagcaaagtatataatgcggacaccaagtgaatgggacagattcatgagattcatggagcgctatgctaatgacaatggcttgagtttcattaaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Psb28

Protein Analysis

242

Amino Acids

27.35

Weight (kDa)

8.85

Isoelectric Point (pI)

58.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28660 AT4G28660
fragaria_vesca	FvH4_2g20470
malus_domestica	MD05G1188500.v1.1 MD10G1176000.v1.1
prunus_persica	Prupe.8G215000_v2.0.a1 Prupe.8G215000_v2.0.a1 Prupe.8G215000_v2.0.a1
pyrus_communis	pycom05g17310 pycom10g15160
rosa_chinensis	RchiOBHm_Chr6g0286561
rosa_laevigata	RLG00000012557
rosa_multiflora	Rmu_sc0004628.1_g000014
rosa_roxburghii	Rroxscaffold_7G00182180
rosa_rugosa	Rorug06G0181000 Rorug06G0181100
rosa_samantha	Rh6AG293800 Rh6BG297100 Rh6CG297400 Rh6DG289400
rosa_wichuraiana	Rw6G025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	320
Acc65I	GGTACC	1 cut(s)	467
AccB1I	GGYRCC	2 cut(s)	340, 467
AciI	CCGC	3 cut(s)	62, 275, 646
AclWI	GGATC	1 cut(s)	366
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	4 cut(s)	124, 399, 527, 599
AcyI	GRCGYC	1 cut(s)	341
AdeI	CACNNNGTG	1 cut(s)	656
AfaI	GTAC	2 cut(s)	18, 469
AfeI	AGCGCT	1 cut(s)	689
AgsI	TTSAA	3 cut(s)	123, 304, 629
AleI	CACNNNNGTG	1 cut(s)	349
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	366
Aor51HI	AGCGCT	1 cut(s)	689
AoxI	GGCC	2 cut(s)	307, 329
ApeKI	GCWGC	1 cut(s)	499
ApoI	RAATTY	4 cut(s)	124, 399, 527, 599
Asp718I	GGTACC	1 cut(s)	467
AspLEI	GCGC	3 cut(s)	321, 343, 690
AspS9I	GGNCC	1 cut(s)	330
AsuHPI	GGTGA	3 cut(s)	91, 147, 545
BalI	TGGCCA	1 cut(s)	309
BanI	GGYRCC	2 cut(s)	340, 467
BbsI	GAAGAC	2 cut(s)	173, 192
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	4 cut(s)	37, 379, 383, 458
BclI	TGATCA	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	2 cut(s)	357, 369
BfmI	CTRYAG	1 cut(s)	618
BfoI	RGCGCY	2 cut(s)	344, 691
BisI	GCNGC	1 cut(s)	500
BlsI	GCNGC	1 cut(s)	501
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	3 cut(s)	332, 342, 469
BmsI	GCATC	1 cut(s)	374
BpiI	GAAGAC	2 cut(s)	173, 192
BpmI	CTGGAG	3 cut(s)	11, 204, 221
BsaHI	GRCGYC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bse1I	ACTGG	2 cut(s)	310, 547
Bse3DI	GCAATG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	189
BseNI	ACTGG	2 cut(s)	310, 547
BseRI	GAGGAG	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	511
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	309, 331
BshNI	GGYRCC	2 cut(s)	340, 467
BslFI	GGGAC	1 cut(s)	677
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	677
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	309, 331
Bsp143I	GATC	2 cut(s)	147, 371
BspACI	CCGC	3 cut(s)	62, 275, 646
BspANI	GGCC	2 cut(s)	309, 331
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	3 cut(s)	332, 342, 469
BspMAI	CTGCAG	1 cut(s)	622
BspPI	GGATC	1 cut(s)	366
BspT107I	GGYRCC	2 cut(s)	340, 467
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	310, 547
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	2 cut(s)	147, 371
BssNI	GRCGYC	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	412
Bst4CI	ACNGT	1 cut(s)	233
BstACI	GRCGYC	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	117
BstH2I	RGCGCY	2 cut(s)	344, 691
BstHHI	GCGC	3 cut(s)	321, 343, 690
BstKTI	GATC	2 cut(s)	150, 374
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	2 cut(s)	147, 371
BstSFI	CTRYAG	1 cut(s)	618
BstV1I	GCAGC	1 cut(s)	511
BstV2I	GAAGAC	2 cut(s)	173, 192
BstX2I	RGATCY	1 cut(s)	371
BstXI	CCANNNNNNTGG	3 cut(s)	351, 478, 660
BstYI	RGATCY	1 cut(s)	371
BsuRI	GGCC	2 cut(s)	309, 331
BtsCI	GGATG	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	229, 540
Cac8I	GCNNGC	1 cut(s)	618
CciI	TCATGA	1 cut(s)	672
CfoI	GCGC	3 cut(s)	321, 343, 690
Cfr13I	GGNCC	1 cut(s)	330
Csp6I	GTAC	2 cut(s)	17, 468
CviAII	CATG	4 cut(s)	151, 553, 673, 682
CviJI	RGCY	9 cut(s)	224, 309, 331, 448, 482, 502, 546, 616, 708
CviKI_1	RGCY	9 cut(s)	224, 309, 331, 448, 482, 502, 546, 616, 708
CviQI	GTAC	2 cut(s)	17, 468
DdeI	CTNAG	1 cut(s)	347
DinI	GGCGCC	1 cut(s)	342
DpnI	GATC	2 cut(s)	149, 373
DpnII	GATC	2 cut(s)	147, 371
DraIII	CACNNNGTG	1 cut(s)	656
EaeI	YGGCCR	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	412
Eco32I	GATATC	1 cut(s)	538
Eco47III	AGCGCT	1 cut(s)	689
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	412
EgeI	GGCGCC	1 cut(s)	342
EheI	GGCGCC	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	4 cut(s)	154, 556, 676, 685
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	4 cut(s)	150, 552, 672, 681
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	500
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	500
FspBI	CTAG	2 cut(s)	357, 369
FspI	TGCGCA	1 cut(s)	320
GlaI	GCGC	3 cut(s)	320, 342, 689
GluI	GCNGC	1 cut(s)	500
GsuI	CTGGAG	3 cut(s)	11, 204, 221
HaeII	RGCGCY	2 cut(s)	344, 691
HaeIII	GGCC	2 cut(s)	309, 331
HhaI	GCGC	3 cut(s)	321, 343, 690
Hin1I	GRCGYC	1 cut(s)	341
Hin1II	CATG	4 cut(s)	154, 556, 676, 685
Hin6I	GCGC	3 cut(s)	319, 341, 688
HinP1I	GCGC	3 cut(s)	319, 341, 688
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HinfI	GANTC	5 cut(s)	119, 293, 515, 669, 678
HpaI	GTTAAC	1 cut(s)	592
HphI	GGTGA	3 cut(s)	91, 147, 545
Hpy166II	GTNNAC	2 cut(s)	297, 592
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	3 cut(s)	28, 369, 673
Hpy8I	GTNNAC	2 cut(s)	297, 592
HpyAV	CCTTC	4 cut(s)	109, 130, 513, 560
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	5 cut(s)	182, 196, 209, 290, 620
HpyF3I	CTNAG	1 cut(s)	347
Hsp92I	GRCGYC	1 cut(s)	341
Hsp92II	CATG	4 cut(s)	154, 556, 676, 685
HspAI	GCGC	3 cut(s)	319, 341, 688
KasI	GGCGCC	1 cut(s)	340
KpnI	GGTACC	1 cut(s)	471
Ksp22I	TGATCA	1 cut(s)	147
KspAI	GTTAAC	1 cut(s)	592
Kzo9I	GATC	2 cut(s)	147, 371
LmnI	GCTCC	1 cut(s)	685
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	1 cut(s)	374
MaeI	CTAG	2 cut(s)	357, 369
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	2 cut(s)	149, 373
MboI	GATC	2 cut(s)	147, 371
MboII	GAAGA	4 cut(s)	95, 178, 192, 575
MflI	RGATCY	1 cut(s)	371
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	6 cut(s)	124, 141, 399, 527, 599, 624
MluNI	TGGCCA	1 cut(s)	309
Mly113I	GGCGCC	1 cut(s)	341
MlyI	GAGTC	2 cut(s)	302, 509
MnlI	CCTC	5 cut(s)	45, 70, 226, 235, 438
Mox20I	TGGCCA	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	2 cut(s)	591, 720
MslI	CAYNNNNRTG	3 cut(s)	285, 349, 380
Msp20I	TGGCCA	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	209
NarI	GGCGCC	1 cut(s)	341
NdeII	GATC	2 cut(s)	147, 371
NlaIII	CATG	4 cut(s)	154, 556, 676, 685
NlaIV	GGNNCC	3 cut(s)	332, 342, 469
NmeAIII	GCCGAG	1 cut(s)	307
NmuCI	GTSAC	1 cut(s)	153
NsbI	TGCGCA	1 cut(s)	320
OliI	CACNNNNGTG	1 cut(s)	349
PagI	TCATGA	1 cut(s)	672
PctI	GAATGC	1 cut(s)	209
PfeI	GAWTC	3 cut(s)	119, 669, 678
PkrI	GCNGC	1 cut(s)	501
PleI	GAGTC	2 cut(s)	301, 509
PluTI	GGCGCC	1 cut(s)	344
PpsI	GAGTC	2 cut(s)	301, 509
PspN4I	GGNNCC	3 cut(s)	332, 342, 469
PspPI	GGNCC	1 cut(s)	330
PstI	CTGCAG	1 cut(s)	622
PsuI	RGATCY	1 cut(s)	371
RsaI	GTAC	2 cut(s)	18, 469
RsaNI	GTAC	2 cut(s)	17, 468
RseI	CAYNNNNRTG	3 cut(s)	285, 349, 380
SaqAI	TTAA	2 cut(s)	591, 720
SatI	GCNGC	1 cut(s)	500
Sau3AI	GATC	2 cut(s)	147, 371
Sau96I	GGNCC	1 cut(s)	330
SbfI	CCTGCAGG	1 cut(s)	622
SchI	GAGTC	2 cut(s)	302, 509
SdaI	CCTGCAGG	1 cut(s)	622
SetI	ASST	7 cut(s)	72, 81, 133, 141, 194, 353, 494
SfaNI	GCATC	1 cut(s)	374
SfcI	CTRYAG	1 cut(s)	618
SfoI	GGCGCC	1 cut(s)	342
SmiMI	CAYNNNNRTG	3 cut(s)	285, 349, 380
SmlI	CTYRAG	1 cut(s)	709
SmoI	CTYRAG	1 cut(s)	709
Sse8387I	CCTGCAGG	1 cut(s)	622
Sse9I	AATT	6 cut(s)	124, 141, 399, 527, 599, 624
SsiI	CCGC	3 cut(s)	62, 275, 646
SspDI	GGCGCC	1 cut(s)	340
SspMI	CTAG	2 cut(s)	357, 369
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	1 cut(s)	513
TasI	AATT	6 cut(s)	124, 141, 399, 527, 599, 624
TfiI	GAWTC	3 cut(s)	119, 669, 678
Tru1I	TTAA	2 cut(s)	591, 720
Tru9I	TTAA	2 cut(s)	591, 720
TscAI	CASTG	2 cut(s)	236, 547
TseFI	GTSAC	1 cut(s)	153
TseI	GCWGC	1 cut(s)	499
Tsp45I	GTSAC	1 cut(s)	153
TspDTI	ATGAA	9 cut(s)	104, 128, 179, 269, 567, 576, 661, 670, 706
TspRI	CASTG	2 cut(s)	236, 547
XapI	RAATTY	4 cut(s)	124, 399, 527, 599
XbaI	TCTAGA	1 cut(s)	368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XspI	CTAG	2 cut(s)	357, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.