Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012832

Physical Location & Seq

Genomic Coordinates Forward (+)

20925690 .. 20931006

Gene Structure 5317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G236900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1683 bp

ATGAGAGATGGGAATTCCAAGAAAAGCAAGCTTTCATGGCCCAAGACACTGGTCAAGAAGTGGTTCAATATTAAGAGCAAAGCCGAGGACTTTGACGCAGACGACGCCGTTTATAGAGGTGGTGATGAAGAGTGGAGGAACACCTATTCAGAGAGGGAGGCATGCACAATCAAGAAAAGCAAAACAGAAAGATTAAGTAAGAGGCACTCTGATAGAGTCCGAAGGGGTAAGATTGACATGGACGCATCACAAGTTACAGATGTACACAATTATAGGATCTTTGTAGCTACATGGAATGTGGCTGGAAAATCTCCTCCAAGTTGTCTGAATCTTGAAGATTGGCTCCACACCTCTCCTCCTGCTGATATTTATGTTCTTGGGTTTCAGGAAATAGTTCCTTTGAATGCTGGCAATGTTTTGGGCACAGAAGATAACGGCCCAGCAAAAAAGTGGCTAGCTCTTATAAGGAAGACTCTAAATAATCTTCCTGGAACAAGTGGTGGTTGCCATACACCTTCACCAATTCCTGATCCAATTGTAGAATTAGATGCAGACTTTGAAGGATCAACAAAGCAGAAGGCTTCCTCTTTCTTTCACCGCAGGTCCTTTCAGTCCTTGAGCCGCAGCATGAGAATGGACAATGACATGTCAATGCCGCAACCCCGACTTGATCGACGATTCAGTGTTTGTGATCGGGTTATGTTTGGGCACAGACCAAGTGATTATGACCCCAATTACAGATGGGGTTCCTCTGACGATGAGAATGGACCTGGTGATTCACCTGTTGTCACACAGTATTCACCAATGTCCAACAGTGGGTCTTTCTCATTGGAGGATAGAGATAGACAGCCAGGGAACTCAAGATACTGCTTGGTTGCCAGCAAACAAATGGTTGGTATATTTTTGACAGTATGGGTAAAAAGTGATCTTAGAGATGATGTCCGCAATATGAAAGTGTCTTGTGTTGGAAGAGGATTAATGGGCTATCTTGGAAATAAGGGTTCAATTTCCATTAGCATGTCTTTGCACCAAACAAGCTTTTGCTTCATCTGTAGTCATCTGACCTCTGGCCAGAAGGAAGGAGATGAACTTCGAAGAAATTCTGATGTCATGGAGATCCTGAGGAAGACAAGGTTTCCCAGGGTTCATGGCATGGGAGATGAAAACTCTCCTCAGACAATACTAGAGCATGATCGAATCATTTGGCTTGGGGATTTAAATTATCGCATTGCCCTTTCTTACCGCTCTGCAAAAGCTCTTGTTGAGATGCGCAACTGGAGGGCATTGTTAGAGAATGACCAGCTGAGGATAGAGCAAAGACGAGGACGAGTCTTTGAGGGATGGAGTGAAGGAAAGATATATTTCCCTCCGACATACAAATATTTAAATAATTCAGATAGGTATGCAGGTGATGATAGGCACACCAAGGAGAAGCGAAGAACTCCAGCATGGTGTGATCGTATATTATGGCACGGAAGAGGCATTTATCAATTGTCTTATGTTCGTGGGGAGTCAAAGTTCTCAGATCATAGGCCAGTTTACAGCGTATTTCTGGCCGAGGTTGAGTCTATTAACCGTAACCGAATCAAGAAAAGCATGAGTTGTTCCAGTTCCAGAATTGAGGTAGAGGAGCTGTTACCACACTCGCATGGATATAGAAACATTGACCTCAATTTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052866 GO:0071704 GO:0106019

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

561

Amino Acids

64.44

Weight (kDa)

9.18

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63240 AT3G63240
fragaria_vesca	FvH4_2g23170
malus_domestica	MD03G1261100.v1.1 MD11G1281400.v1.1
prunus_persica	Prupe.8G236900_v2.0.a1
pyrus_communis	pycom03g20850 pycom11g24940
rosa_chinensis	RchiOBHm_Chr6g0290421
rosa_laevigata	RLG00000012220
rosa_multiflora	Rmu_sc0002890.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177080
rosa_rugosa	Rorug06G0212600
rosa_samantha	Rh6AG322600 Rh6BG330100 Rh6CG336100
rosa_wichuraiana	Rw6G027880 Rw6G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AarI	CACCTGC	1 cut(s)	1397
Acc16I	TGCGCA	1 cut(s)	1271
Acc36I	ACCTGC	2 cut(s)	591, 1397
AccBSI	CCGCTC	1 cut(s)	1245
AciI	CCGC	5 cut(s)	598, 622, 656, 943, 1243
AclWI	GGATC	4 cut(s)	284, 524, 571, 1111
AcoI	YGGCCR	2 cut(s)	1069, 1554
AcsI	RAATTY	2 cut(s)	13, 1099
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	816
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	5 cut(s)	67, 335, 403, 560, 1005
AjnI	CCWGG	4 cut(s)	487, 769, 850, 1139
AloI	GAACNNNNNNTCC	2 cut(s)	1502, 1534
AluBI	AGCT	7 cut(s)	31, 287, 458, 1038, 1256, 1303, 1633
AluI	AGCT	7 cut(s)	31, 287, 458, 1038, 1256, 1303, 1633
AlwI	GGATC	4 cut(s)	284, 524, 571, 1111
AoxI	GGCC	5 cut(s)	38, 436, 1069, 1532, 1554
ApeKI	GCWGC	1 cut(s)	624
ApoI	RAATTY	2 cut(s)	13, 1099
AseI	ATTAAT	1 cut(s)	977
Asp700I	GAANNNNTTC	3 cut(s)	62, 393, 1099
AspLEI	GCGC	1 cut(s)	1272
AspS9I	GGNCC	4 cut(s)	39, 437, 603, 767
AsuHPI	GGTGA	7 cut(s)	134, 510, 587, 771, 785, 792, 1421
AsuII	TTCGAA	1 cut(s)	1093
AsuNHI	GCTAGC	1 cut(s)	454
AvaII	GGWCC	2 cut(s)	603, 767
AxyI	CCTNAGG	1 cut(s)	1121
BaeGI	GKGCMC	2 cut(s)	425, 711
BalI	TGGCCA	1 cut(s)	1071
BbsI	GAAGAC	2 cut(s)	476, 1133
BbvCI	CCTCAGC	1 cut(s)	1304
BbvI	GCAGC	1 cut(s)	636
BccI	CCATC	3 cut(s)	2, 735, 1335
BceAI	ACGGC	2 cut(s)	92, 451
BciT130I	CCWGG	4 cut(s)	489, 771, 852, 1141
BfaI	CTAG	2 cut(s)	455, 1184
BfmI	CTRYAG	1 cut(s)	1051
BfuAI	ACCTGC	2 cut(s)	591, 1397
BisI	GCNGC	3 cut(s)	622, 625, 656
BlsI	GCNGC	3 cut(s)	623, 626, 657
Bme1390I	CCNGG	4 cut(s)	489, 771, 852, 1141
Bme18I	GGWCC	2 cut(s)	603, 767
BmgT120I	GGNCC	4 cut(s)	39, 437, 603, 767
BmiI	GGNNCC	2 cut(s)	344, 748
BmrFI	CCNGG	4 cut(s)	489, 771, 852, 1141
BmsI	GCATC	3 cut(s)	254, 538, 1257
BmtI	GCTAGC	1 cut(s)	458
BoxI	GACNNNNGTC	1 cut(s)	50
BpiI	GAAGAC	2 cut(s)	476, 1133
BpmI	CTGGAG	2 cut(s)	1297, 1428
Bpu10I	CCTNAGC	1 cut(s)	1304
Bpu14I	TTCGAA	1 cut(s)	1093
BpuEI	CTTGAG	2 cut(s)	637, 844
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	6 cut(s)	84, 851, 1139, 1140, 1425, 1557
BsaXI	ACNNNNNCTCC	4 cut(s)	340, 370, 1502, 1532
Bsc4I	CCNNNNNNNGG	1 cut(s)	816
Bse1I	ACTGG	4 cut(s)	54, 1280, 1535, 1608
Bse21I	CCTNAGG	1 cut(s)	1121
Bse3DI	GCAATG	2 cut(s)	418, 1227
BseBI	CCWGG	4 cut(s)	489, 771, 852, 1141
BseDI	CCNNGG	6 cut(s)	84, 851, 1139, 1140, 1425, 1557
BseGI	GGATG	1 cut(s)	1346
BseLI	CCNNNNNNNGG	1 cut(s)	816
BseMI	GCAATG	2 cut(s)	418, 1227
BseMII	CTCAG	4 cut(s)	1112, 1187, 1295, 1536
BseNI	ACTGG	4 cut(s)	54, 1280, 1535, 1608
BseRI	GAGGAG	4 cut(s)	303, 345, 1161, 1643
BseSI	GKGCMC	2 cut(s)	425, 711
BseXI	GCAGC	1 cut(s)	636
BseYI	CCCAGC	1 cut(s)	439
BshFI	GGCC	5 cut(s)	40, 438, 1071, 1534, 1556
BslI	CCNNNNNNNGG	1 cut(s)	816
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	5 cut(s)	40, 438, 1071, 1534, 1556
Bsp119I	TTCGAA	1 cut(s)	1093
Bsp1286I	GDGCHC	2 cut(s)	425, 711
Bsp1407I	TGTACA	1 cut(s)	262
BspACI	CCGC	5 cut(s)	598, 622, 656, 943, 1243
BspANI	GGCC	5 cut(s)	40, 438, 1071, 1534, 1556
BspCNI	CTCAG	4 cut(s)	1113, 1186, 1296, 1535
BspLI	GGNNCC	2 cut(s)	344, 748
BspMI	ACCTGC	2 cut(s)	591, 1397
BspOI	GCTAGC	1 cut(s)	458
BspPI	GGATC	4 cut(s)	284, 524, 571, 1111
BspT104I	TTCGAA	1 cut(s)	1093
BsrBI	CCGCTC	1 cut(s)	1245
BsrDI	GCAATG	2 cut(s)	418, 1227
BsrGI	TGTACA	1 cut(s)	262
BsrI	ACTGG	4 cut(s)	54, 1280, 1535, 1608
BssECI	CCNNGG	6 cut(s)	84, 851, 1139, 1140, 1425, 1557
BssNI	GRCGYC	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	1425
Bst2UI	CCWGG	4 cut(s)	489, 771, 852, 1141
Bst4CI	ACNGT	4 cut(s)	795, 815, 910, 1577
Bst6I	CTCTTC	3 cut(s)	123, 964, 1471
BstACI	GRCGYC	1 cut(s)	105
BstAUI	TGTACA	1 cut(s)	262
BstBI	TTCGAA	1 cut(s)	1093
BstC8I	GCNNGC	5 cut(s)	29, 163, 409, 456, 880
BstDEI	CTNAG	5 cut(s)	929, 1121, 1173, 1304, 1522
BstF5I	GGATG	1 cut(s)	1346
BstHHI	GCGC	1 cut(s)	1272
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 104
BstNI	CCWGG	4 cut(s)	489, 771, 852, 1141
BstNSI	RCATGY	3 cut(s)	165, 649, 1021
BstPAI	GACNNNNGTC	1 cut(s)	50
BstSCI	CCNGG	4 cut(s)	487, 769, 850, 1139
BstSFI	CTRYAG	1 cut(s)	1051
BstSLI	GKGCMC	2 cut(s)	425, 711
BstV1I	GCAGC	1 cut(s)	636
BstV2I	GAAGAC	2 cut(s)	476, 1133
BstX2I	RGATCY	2 cut(s)	276, 1116
BstXI	CCANNNNNNTGG	1 cut(s)	49
BstYI	RGATCY	2 cut(s)	276, 1116
Bsu36I	CCTNAGG	1 cut(s)	1121
BsuRI	GGCC	5 cut(s)	40, 438, 1071, 1534, 1556
BtsCI	GGATG	1 cut(s)	1346
BtsIMutI	CAGTG	3 cut(s)	47, 688, 820
BveI	ACCTGC	2 cut(s)	591, 1397
Cac8I	GCNNGC	5 cut(s)	29, 163, 409, 456, 880
CfoI	GCGC	1 cut(s)	1272
Cfr13I	GGNCC	4 cut(s)	39, 437, 603, 767
CseI	GACGC	3 cut(s)	104, 113, 251
CsiI	ACCWGGT	1 cut(s)	769
Csp6I	GTAC	1 cut(s)	263
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	5 cut(s)	929, 1121, 1173, 1304, 1522
DraI	TTTAAA	2 cut(s)	1218, 1386
EaeI	YGGCCR	2 cut(s)	1069, 1554
Eam1104I	CTCTTC	3 cut(s)	123, 964, 1471
EarI	CTCTTC	3 cut(s)	123, 964, 1471
Eco130I	CCWWGG	1 cut(s)	1425
Eco47I	GGWCC	2 cut(s)	603, 767
Eco81I	CCTNAGG	1 cut(s)	1121
EcoO109I	RGGNCCY	1 cut(s)	603
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	4 cut(s)	487, 769, 850, 1139
EcoT14I	CCWWGG	1 cut(s)	1425
ErhI	CCWWGG	1 cut(s)	1425
Fnu4HI	GCNGC	3 cut(s)	622, 625, 656
FokI	GGATG	1 cut(s)	1353
Fsp4HI	GCNGC	3 cut(s)	622, 625, 656
FspBI	CTAG	2 cut(s)	455, 1184
FspI	TGCGCA	1 cut(s)	1271
GlaI	GCGC	1 cut(s)	1271
GluI	GCNGC	3 cut(s)	622, 625, 656
GsaI	CCCAGC	1 cut(s)	443
GsuI	CTGGAG	2 cut(s)	1297, 1428
HaeIII	GGCC	5 cut(s)	40, 438, 1071, 1534, 1556
HgaI	GACGC	3 cut(s)	104, 113, 251
HhaI	GCGC	1 cut(s)	1272
Hin1I	GRCGYC	1 cut(s)	105
Hin6I	GCGC	1 cut(s)	1270
HinP1I	GCGC	1 cut(s)	1270
HindIII	AAGCTT	2 cut(s)	29, 1036
HphI	GGTGA	7 cut(s)	134, 510, 587, 771, 785, 792, 1421
Hpy166II	GTNNAC	2 cut(s)	265, 1540
Hpy188III	TCNNGA	9 cut(s)	55, 172, 332, 386, 527, 861, 1120, 1588, 1614
Hpy8I	GTNNAC	2 cut(s)	265, 1540
Hpy99I	CGWCG	2 cut(s)	107, 678
HpyAV	CCTTC	7 cut(s)	216, 525, 554, 571, 1069, 1073, 1343
HpyCH4III	ACNGT	4 cut(s)	795, 815, 910, 1577
HpyCH4V	TGCA	5 cut(s)	165, 551, 1027, 1250, 1406
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 104
HpyF3I	CTNAG	5 cut(s)	929, 1121, 1173, 1304, 1522
Hsp92I	GRCGYC	1 cut(s)	105
HspAI	GCGC	1 cut(s)	1270
LmnI	GCTCC	2 cut(s)	348, 1630
Lsp1109I	GCAGC	1 cut(s)	636
LweI	GCATC	3 cut(s)	254, 538, 1257
MabI	ACCWGGT	1 cut(s)	769
MaeI	CTAG	2 cut(s)	455, 1184
MaeIII	GTNAC	4 cut(s)	253, 787, 1577, 1635
MbiI	CCGCTC	1 cut(s)	1245
MfeI	CAATTG	2 cut(s)	534, 1490
MflI	RGATCY	2 cut(s)	276, 1116
MhlI	GDGCHC	2 cut(s)	425, 711
MlsI	TGGCCA	1 cut(s)	1071
MluNI	TGGCCA	1 cut(s)	1071
MlyI	GAGTC	5 cut(s)	225, 466, 1338, 1520, 1574
MmeI	TCCRAC	3 cut(s)	834, 946, 1394
Mox20I	TGGCCA	1 cut(s)	1071
MroXI	GAANNNNTTC	3 cut(s)	62, 393, 1099
MscI	TGGCCA	1 cut(s)	1071
MseI	TTAA	6 cut(s)	72, 194, 977, 1217, 1385, 1572
MslI	CAYNNNNRTG	4 cut(s)	632, 650, 1016, 1647
Msp20I	TGGCCA	1 cut(s)	1071
MspA1I	CMGCKG	1 cut(s)	1303
MspR9I	CCNGG	4 cut(s)	489, 771, 852, 1141
MunI	CAATTG	2 cut(s)	534, 1490
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	4 cut(s)	489, 771, 852, 1141
MwoI	GCNNNNNNNGC	2 cut(s)	37, 104
NheI	GCTAGC	1 cut(s)	454
NlaIV	GGNNCC	2 cut(s)	344, 748
NmeAIII	GCCGAG	2 cut(s)	109, 1582
NmuCI	GTSAC	1 cut(s)	787
NsbI	TGCGCA	1 cut(s)	1271
NspI	RCATGY	3 cut(s)	165, 649, 1021
NspV	TTCGAA	1 cut(s)	1093
PaeI	GCATGC	1 cut(s)	165
PaqCI	CACCTGC	1 cut(s)	1397
PasI	CCCWGGG	1 cut(s)	1140
PciI	ACATGT	1 cut(s)	645
PctI	GAATGC	1 cut(s)	409
PdmI	GAANNNNTTC	3 cut(s)	62, 393, 1099
PfeI	GAWTC	5 cut(s)	328, 678, 776, 1197, 1584
PfoI	TCCNGGA	1 cut(s)	487
PkrI	GCNGC	3 cut(s)	623, 626, 657
PleI	GAGTC	5 cut(s)	224, 466, 1337, 1519, 1573
PpsI	GAGTC	5 cut(s)	224, 466, 1337, 1519, 1573
PpuMI	RGGWCCY	1 cut(s)	603
PscI	ACATGT	1 cut(s)	645
PshAI	GACNNNNGTC	1 cut(s)	50
PshBI	ATTAAT	1 cut(s)	977
PsiI	TTATAA	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	603
Psp6I	CCWGG	4 cut(s)	487, 769, 850, 1139
PspFI	CCCAGC	1 cut(s)	439
PspGI	CCWGG	4 cut(s)	487, 769, 850, 1139
PspN4I	GGNNCC	2 cut(s)	344, 748
PspPI	GGNCC	4 cut(s)	39, 437, 603, 767
PspPPI	RGGWCCY	1 cut(s)	603
PsrI	GAACNNNNNNTAC	2 cut(s)	848, 880
PsuI	RGATCY	2 cut(s)	276, 1116
PvuII	CAGCTG	1 cut(s)	1303
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
RseI	CAYNNNNRTG	4 cut(s)	632, 650, 1016, 1647
SaqAI	TTAA	6 cut(s)	72, 194, 977, 1217, 1385, 1572
SatI	GCNGC	3 cut(s)	622, 625, 656
Sau96I	GGNCC	4 cut(s)	39, 437, 603, 767
SchI	GAGTC	5 cut(s)	225, 466, 1338, 1520, 1574
ScrFI	CCNGG	4 cut(s)	489, 771, 852, 1141
SduI	GDGCHC	2 cut(s)	425, 711
SexAI	ACCWGGT	1 cut(s)	769
SfaNI	GCATC	3 cut(s)	254, 538, 1257
SfcI	CTRYAG	1 cut(s)	1051
SfuI	TTCGAA	1 cut(s)	1093
SinI	GGWCC	2 cut(s)	603, 767
SmiI	ATTTAAAT	2 cut(s)	1218, 1386
SmiMI	CAYNNNNRTG	4 cut(s)	632, 650, 1016, 1647
SmlI	CTYRAG	2 cut(s)	616, 859
SmoI	CTYRAG	2 cut(s)	616, 859
SphI	GCATGC	1 cut(s)	165
SsiI	CCGC	5 cut(s)	598, 622, 656, 943, 1243
SspI	AATATT	2 cut(s)	70, 1382
SspMI	CTAG	2 cut(s)	455, 1184
StyD4I	CCNGG	4 cut(s)	487, 769, 850, 1139
StyI	CCWWGG	1 cut(s)	1425
SwaI	ATTTAAAT	2 cut(s)	1218, 1386
TaaI	ACNGT	4 cut(s)	795, 815, 910, 1577
TaqI	TCGA	3 cut(s)	673, 1093, 1195
TatI	WGTACW	1 cut(s)	262
TauI	GCSGC	2 cut(s)	624, 658
TfiI	GAWTC	5 cut(s)	328, 678, 776, 1197, 1584
Tru1I	TTAA	6 cut(s)	72, 194, 977, 1217, 1385, 1572
Tru9I	TTAA	6 cut(s)	72, 194, 977, 1217, 1385, 1572
TscAI	CASTG	3 cut(s)	54, 688, 820
TseFI	GTSAC	1 cut(s)	787
TseI	GCWGC	1 cut(s)	624
Tsp45I	GTSAC	1 cut(s)	787
TspDTI	ATGAA	7 cut(s)	24, 141, 965, 1036, 1101, 1136, 1176
TspGWI	ACGGA	1 cut(s)	1488
TspRI	CASTG	3 cut(s)	54, 688, 820
VpaK11BI	GGWCC	2 cut(s)	603, 767
VspI	ATTAAT	1 cut(s)	977
XapI	RAATTY	2 cut(s)	13, 1099
XceI	RCATGY	3 cut(s)	165, 649, 1021
XcmI	CCANNNNNNNNNTGG	2 cut(s)	447, 886
XmnI	GAANNNNTTC	3 cut(s)	62, 393, 1099
XspI	CTAG	2 cut(s)	455, 1184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.