Rw6G027880

Type I inositol 1,4,5-trisphosphate 5-phosphatase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
51846799 .. 51849877
3079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G027880.1

Sequence Viewer

Length: 1500 bp
ATGATAGATGGGAATTCAAAGAAAGCAAGGTTTGATAAAATGCCTGCATTTCCTCTGATTTTGTTCTTCTGTGTGTTGTTTGTTCTGGGTATGAAGCTTTCATGGCCCAAGACACTGGTCAAGAAGTGGCTCAACATCAAGAGCAAAGCTGAGGATTTTCACGCAGACGATGTTGTTTATGGAGGTGGTGATGAAGAGTGGAGGAACAACTATTCAGAGAGGGAAGCATGCACAATCAAGAAAAGCAAAACAGTCCGGCGAGGTAAGATTGACATGGACGTATCACAGGTTACAGACGTACAAAACTATAGGATTTTTGTAGCTACATGGAATGTGGCTGGAAAATCTCCTCCGAGTTATTTGAATCTAGAAGATTGGCTTCATACCTCTCCTCCTGCTGACATTTATGTTCTAGGTATGTTTCAAGAAATAGTTCCTTTGAATGCTGGCAATGTGTTGGGGACAGAGGACAATGCCCCGGCTAAAAATGGTCTTCCCGGCACAAGTGGTGGTTGCCATACACCTTCGCCAGTTCCTGATCCAATTGTGGAGTTGGATTCAGACTTTGAGGGATCAACAAGGCAGAAGGCATCCTCCTTCTTCCACCGCCGGTCCTTTCAATCCTTGAGCCGCAGCATGAGAATGGAGAATGACATGTCAATGCCACAACCCCAGCTTGATCGACGGTACAGTGTTTGTGATCGAGTTATTTTTGGGAATAGACCAAGTGACTATGACCCCAATGTAAGATGGGGTTCCTCTGATGATGATAATGGACCTGGTGAGTCACCTGTTGTCACACAGTATTCACCAATGTCCAATAGGAACTCAAGGTACTGCTTGGTTGCCAGCAAGCAAATGGTTGGGATATTTTTAACGGTGTGGGTGAGAAGTGATCTCAGAGATGATGTTCGCAATATGAAGGTGTCTTGTGGCAGAGGATTGATGGGCTATCTTGGAAATAAGGGTTCAATTTCAATTAGCATGTCCTTGCACCAAACAAGCTTCTGCTTCATCTGTAGTCATCTAACCTCTGGGCAGAAGGACGGAGATGAACTTCGAAGAAACTCTGATGTCTTGGAGATCCTTAGGAAGACAAGTCGAATCATTTGGCTCGGTGATTTGAATTATCGCATTGCCCTTTCTTACCGCTATGCAAAAGCTCTTGTTGAGATGCGCAACTGGAGGGCATTGTTAGAGAAGGACCAGCTGAGGATAGAGCAGAGACGAGGACGTGTCTTTGAGGGATGGAGTGAAGGGAAGATATATTTCCCTCCGACATACAAGTGTGATCGTCTATTATGGCATGGAAGAGGCCTCCTTCAATTGTCCTATGTTCGTGGGGAGTCGAGGTTCTCAGATCACAGGCCAGTTTACAGCGTATTTCTGGCAGAGGTCGAGTCCATTAACCGTAACCGAATCAAGAAAAGCATGAGTTGTTCCAGTTCCAGGATTGAGGTAGAGGAGCTGTTGCCACACTCGTGTGGATACTCCCACTAA

Protein Analysis

499

Amino Acids

56.98

Weight (kDa)

9.03

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 274 - 460 6.7e-41 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012832)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63240 AT3G63240
fragaria_vesca FvH4_2g23170
malus_domestica MD03G1261100.v1.1 MD11G1281400.v1.1
prunus_persica Prupe.8G236900_v2.0.a1
pyrus_communis pycom03g20850 pycom11g24940
rosa_chinensis RchiOBHm_Chr6g0290421
rosa_laevigata RLG00000012220
rosa_multiflora Rmu_sc0002890.1_g000001
rosa_roxburghii Rroxscaffold_7G00177080
rosa_rugosa Rorug06G0212600
rosa_samantha Rh6AG322600 Rh6BG330100 Rh6CG336100
rosa_wichuraiana Rw6G027880 Rw6G027970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1178
AciI CCGC 3 cut(s) 607, 631, 1150
AclWI GGATC 3 cut(s) 533, 580, 1078
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 3 cut(s) 300, 689, 836
AfiI CCNNNNNNNGG 1 cut(s) 1449
AflIII ACRYGT 2 cut(s) 654, 1234
AgsI TTSAA 9 cut(s) 18, 364, 425, 442, 620, 972, 978, 1126, 1325
AjiI CACGTC 1 cut(s) 1235
AjnI CCWGG 2 cut(s) 778, 1448
AleI CACNNNNGTG 2 cut(s) 1480, 1482
AloI GAACNNNNNNTCC 2 cut(s) 1337, 1369
AluBI AGCT 8 cut(s) 97, 149, 323, 676, 1005, 1163, 1210, 1468
AluI AGCT 8 cut(s) 97, 149, 323, 676, 1005, 1163, 1210, 1468
Alw26I GTCTC 1 cut(s) 1219
AlwI GGATC 3 cut(s) 533, 580, 1078
AlwNI CAGNNNCTG 1 cut(s) 536
AoxI GGCC 3 cut(s) 104, 1315, 1367
ApeKI GCWGC 1 cut(s) 633
ApoI RAATTY 1 cut(s) 13
Asp700I GAANNNNTTC 1 cut(s) 432
AspLEI GCGC 1 cut(s) 1179
AspS9I GGNCC 4 cut(s) 105, 612, 776, 1204
AsuC2I CCSGG 2 cut(s) 479, 498
AsuHPI GGTGA 6 cut(s) 200, 780, 794, 801, 898, 1130
AsuII TTCGAA 1 cut(s) 1060
AvaII GGWCC 3 cut(s) 612, 776, 1204
AxyI CCTNAGG 1 cut(s) 1088
BauI CACGAG 1 cut(s) 1480
BbsI GAAGAC 2 cut(s) 485, 1100
BbvCI CCTCAGC 2 cut(s) 150, 1211
BbvI GCAGC 1 cut(s) 645
BccI CCATC 4 cut(s) 2, 744, 940, 1242
BciT130I CCWGG 2 cut(s) 780, 1450
BciVI GTATCC 1 cut(s) 1481
BcnI CCSGG 2 cut(s) 479, 498
BcoDI GTCTC 1 cut(s) 1219
BfaI CTAG 2 cut(s) 368, 413
BfmI CTRYAG 2 cut(s) 307, 1018
BfuI GTATCC 1 cut(s) 1481
BisI GCNGC 2 cut(s) 631, 634
BlsI GCNGC 2 cut(s) 632, 635
Bme1390I CCNGG 4 cut(s) 479, 498, 780, 1450
Bme18I GGWCC 3 cut(s) 612, 776, 1204
BmgBI CACGTC 1 cut(s) 1235
BmgT120I GGNCC 4 cut(s) 105, 612, 776, 1204
BmiI GGNNCC 1 cut(s) 757
BmrFI CCNGG 4 cut(s) 479, 498, 780, 1450
BmsI GCATC 2 cut(s) 599, 1164
BoxI GACNNNNGTC 1 cut(s) 116
BpiI GAAGAC 2 cut(s) 485, 1100
BpmI CTGGAG 1 cut(s) 1204
Bpu10I CCTNAGC 2 cut(s) 150, 1211
Bpu14I TTCGAA 1 cut(s) 1060
BpuEI CTTGAG 2 cut(s) 646, 814
BpuMI CCSGG 2 cut(s) 479, 498
BsaJI CCNNGG 1 cut(s) 477
BsaXI ACNNNNNCTCC 4 cut(s) 376, 406, 1337, 1367
Bsc4I CCNNNNNNNGG 1 cut(s) 1449
Bse118I RCCGGY 1 cut(s) 609
Bse1I ACTGG 5 cut(s) 120, 530, 1187, 1370, 1443
Bse21I CCTNAGG 1 cut(s) 1088
Bse3DI GCAATG 2 cut(s) 457, 1134
BseBI CCWGG 2 cut(s) 780, 1450
BseDI CCNNGG 1 cut(s) 477
BseGI GGATG 2 cut(s) 590, 1253
BseLI CCNNNNNNNGG 1 cut(s) 1449
BseMI GCAATG 2 cut(s) 457, 1134
BseMII CTCAG 4 cut(s) 141, 913, 1202, 1371
BseNI ACTGG 5 cut(s) 120, 530, 1187, 1370, 1443
BseRI GAGGAG 3 cut(s) 339, 381, 1478
BseXI GCAGC 1 cut(s) 645
BseYI CCCAGC 1 cut(s) 672
BshFI GGCC 3 cut(s) 106, 1317, 1369
BsiSI CCGG 4 cut(s) 256, 479, 498, 610
BslFI GGGAC 1 cut(s) 475
BslI CCNNNNNNNGG 1 cut(s) 1449
BsmAI GTCTC 1 cut(s) 1219
BsmBI CGTCTC 1 cut(s) 1219
BsmFI GGGAC 1 cut(s) 475
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 3 cut(s) 106, 1317, 1369
Bsp119I TTCGAA 1 cut(s) 1060
Bsp143I GATC 8 cut(s) 538, 572, 679, 700, 895, 1083, 1291, 1360
BspACI CCGC 3 cut(s) 607, 631, 1150
BspANI GGCC 3 cut(s) 106, 1317, 1369
BspCNI CTCAG 4 cut(s) 142, 912, 1203, 1370
BspLI GGNNCC 1 cut(s) 757
BspPI GGATC 3 cut(s) 533, 580, 1078
BspT104I TTCGAA 1 cut(s) 1060
BsrDI GCAATG 2 cut(s) 457, 1134
BsrFI RCCGGY 1 cut(s) 609
BsrI ACTGG 5 cut(s) 120, 530, 1187, 1370, 1443
BssAI RCCGGY 1 cut(s) 609
BssECI CCNNGG 1 cut(s) 477
BssMI GATC 8 cut(s) 538, 572, 679, 700, 895, 1083, 1291, 1360
BssSI CACGAG 1 cut(s) 1480
Bst2BI CACGAG 1 cut(s) 1480
Bst2UI CCWGG 2 cut(s) 780, 1450
Bst4CI ACNGT 6 cut(s) 253, 687, 692, 804, 880, 1412
Bst6I CTCTTC 2 cut(s) 189, 1306
BstBI TTCGAA 1 cut(s) 1060
BstC8I GCNNGC 5 cut(s) 45, 229, 448, 850, 854
BstDEI CTNAG 5 cut(s) 150, 899, 1088, 1211, 1357
BstF5I GGATG 2 cut(s) 590, 1253
BstHHI GCGC 1 cut(s) 1179
BstKTI GATC 8 cut(s) 541, 575, 682, 703, 898, 1086, 1294, 1363
BstMAI GTCTC 1 cut(s) 1219
BstMBI GATC 8 cut(s) 538, 572, 679, 700, 895, 1083, 1291, 1360
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNI CCWGG 2 cut(s) 780, 1450
BstNSI RCATGY 3 cut(s) 231, 658, 988
BstPAI GACNNNNGTC 1 cut(s) 116
BstSCI CCNGG 4 cut(s) 477, 496, 778, 1448
BstSFI CTRYAG 2 cut(s) 307, 1018
BstV1I GCAGC 1 cut(s) 645
BstV2I GAAGAC 2 cut(s) 485, 1100
BstX2I RGATCY 1 cut(s) 1083
BstXI CCANNNNNNTGG 1 cut(s) 115
BstYI RGATCY 1 cut(s) 1083
Bsu36I CCTNAGG 1 cut(s) 1088
BsuI GTATCC 1 cut(s) 1481
BsuRI GGCC 3 cut(s) 106, 1317, 1369
BtrI CACGTC 1 cut(s) 1235
BtsCI GGATG 2 cut(s) 590, 1253
BtsIMutI CAGTG 2 cut(s) 113, 697
Cac8I GCNNGC 5 cut(s) 45, 229, 448, 850, 854
CaiI CAGNNNCTG 1 cut(s) 536
CfoI GCGC 1 cut(s) 1179
Cfr10I RCCGGY 1 cut(s) 609
Cfr13I GGNCC 4 cut(s) 105, 612, 776, 1204
CsiI ACCWGGT 1 cut(s) 778
Csp6I GTAC 3 cut(s) 299, 688, 835
CviAII CATG 9 cut(s) 102, 228, 274, 327, 637, 655, 985, 1307, 1432
CviQI GTAC 3 cut(s) 299, 688, 835
DdeI CTNAG 5 cut(s) 150, 899, 1088, 1211, 1357
DpnI GATC 8 cut(s) 540, 574, 681, 702, 897, 1085, 1293, 1362
DpnII GATC 8 cut(s) 538, 572, 679, 700, 895, 1083, 1291, 1360
Eam1104I CTCTTC 2 cut(s) 189, 1306
EarI CTCTTC 2 cut(s) 189, 1306
Eco147I AGGCCT 1 cut(s) 1317
Eco47I GGWCC 3 cut(s) 612, 776, 1204
Eco81I CCTNAGG 1 cut(s) 1088
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 2 cut(s) 778, 1448
Esp3I CGTCTC 1 cut(s) 1219
FaeI CATG 9 cut(s) 105, 231, 277, 330, 640, 658, 988, 1310, 1435
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FaqI GGGAC 1 cut(s) 475
FatI CATG 9 cut(s) 101, 227, 273, 326, 636, 654, 984, 1306, 1431
Fnu4HI GCNGC 2 cut(s) 631, 634
FokI GGATG 2 cut(s) 577, 1260
Fsp4HI GCNGC 2 cut(s) 631, 634
FspBI CTAG 2 cut(s) 368, 413
FspI TGCGCA 1 cut(s) 1178
GlaI GCGC 1 cut(s) 1178
GluI GCNGC 2 cut(s) 631, 634
GsaI CCCAGC 1 cut(s) 676
GsuI CTGGAG 1 cut(s) 1204
HaeIII GGCC 3 cut(s) 106, 1317, 1369
HapII CCGG 4 cut(s) 256, 479, 498, 610
HhaI GCGC 1 cut(s) 1179
Hin1II CATG 9 cut(s) 105, 231, 277, 330, 640, 658, 988, 1310, 1435
Hin6I GCGC 1 cut(s) 1177
HinP1I GCGC 1 cut(s) 1177
HindIII AAGCTT 2 cut(s) 95, 1003
HinfI GANTC 7 cut(s) 364, 557, 785, 1104, 1346, 1400, 1419
HpaII CCGG 4 cut(s) 256, 479, 498, 610
HphI GGTGA 6 cut(s) 200, 780, 794, 801, 898, 1130
Hpy166II GTNNAC 1 cut(s) 1375
Hpy188I TCNGA 9 cut(s) 57, 217, 354, 562, 763, 902, 1072, 1278, 1360
Hpy188III TCNNGA 7 cut(s) 121, 139, 238, 368, 425, 536, 1423
Hpy8I GTNNAC 1 cut(s) 1375
Hpy99I CGWCG 1 cut(s) 687
HpyAV CCTTC 8 cut(s) 534, 580, 607, 916, 1036, 1195, 1250, 1331
HpyCH4III ACNGT 6 cut(s) 253, 687, 692, 804, 880, 1412
HpyCH4IV ACGT 3 cut(s) 279, 297, 1234
HpyCH4V TGCA 4 cut(s) 47, 231, 994, 1157
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 5 cut(s) 150, 899, 1088, 1211, 1357
HpySE526I ACGT 3 cut(s) 279, 297, 1234
Hsp92II CATG 9 cut(s) 105, 231, 277, 330, 640, 658, 988, 1310, 1435
HspAI GCGC 1 cut(s) 1177
Kzo9I GATC 8 cut(s) 538, 572, 679, 700, 895, 1083, 1291, 1360
LmnI GCTCC 1 cut(s) 1465
Lsp1109I GCAGC 1 cut(s) 645
LweI GCATC 2 cut(s) 599, 1164
MabI ACCWGGT 1 cut(s) 778
MaeI CTAG 2 cut(s) 368, 413
MaeII ACGT 3 cut(s) 279, 297, 1234
MaeIII GTNAC 5 cut(s) 289, 728, 786, 796, 1412
MalI GATC 8 cut(s) 540, 574, 681, 702, 897, 1085, 1293, 1362
MboI GATC 8 cut(s) 538, 572, 679, 700, 895, 1083, 1291, 1360
MboII GAAGA 9 cut(s) 58, 206, 383, 485, 592, 1074, 1105, 1273, 1323
MfeI CAATTG 2 cut(s) 543, 1325
MflI RGATCY 1 cut(s) 1083
MluCI AATT 6 cut(s) 13, 543, 972, 978, 1126, 1325
MlyI GAGTC 3 cut(s) 794, 1355, 1409
MmeI TCCRAC 2 cut(s) 534, 1301
MroXI GAANNNNTTC 1 cut(s) 432
MseI TTAA 2 cut(s) 875, 1407
MslI CAYNNNNRTG 5 cut(s) 641, 659, 1285, 1480, 1482
MspA1I CMGCKG 1 cut(s) 1210
MspI CCGG 4 cut(s) 256, 479, 498, 610
MspR9I CCNGG 4 cut(s) 479, 498, 780, 1450
MunI CAATTG 2 cut(s) 543, 1325
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 2 cut(s) 780, 1450
MwoI GCNNNNNNNGC 1 cut(s) 103
NciI CCSGG 2 cut(s) 479, 498
NdeII GATC 8 cut(s) 538, 572, 679, 700, 895, 1083, 1291, 1360
NlaIII CATG 9 cut(s) 105, 231, 277, 330, 640, 658, 988, 1310, 1435
NlaIV GGNNCC 1 cut(s) 757
NmuCI GTSAC 3 cut(s) 728, 786, 796
NsbI TGCGCA 1 cut(s) 1178
NspI RCATGY 3 cut(s) 231, 658, 988
NspV TTCGAA 1 cut(s) 1060
OliI CACNNNNGTG 2 cut(s) 1480, 1482
PaeI GCATGC 1 cut(s) 231
PceI AGGCCT 1 cut(s) 1317
PciI ACATGT 1 cut(s) 654
PctI GAATGC 1 cut(s) 448
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 4 cut(s) 364, 557, 1104, 1419
PfoI TCCNGGA 1 cut(s) 1448
PkrI GCNGC 2 cut(s) 632, 635
PleI GAGTC 3 cut(s) 793, 1354, 1408
PpsI GAGTC 3 cut(s) 793, 1354, 1408
PscI ACATGT 1 cut(s) 654
PshAI GACNNNNGTC 1 cut(s) 116
Psp6I CCWGG 2 cut(s) 778, 1448
PspFI CCCAGC 1 cut(s) 672
PspGI CCWGG 2 cut(s) 778, 1448
PspN4I GGNNCC 1 cut(s) 757
PspPI GGNCC 4 cut(s) 105, 612, 776, 1204
PsrI GAACNNNNNNTAC 2 cut(s) 818, 850
PstNI CAGNNNCTG 1 cut(s) 536
PsuI RGATCY 1 cut(s) 1083
PvuII CAGCTG 1 cut(s) 1210
RsaI GTAC 3 cut(s) 300, 689, 836
RsaNI GTAC 3 cut(s) 299, 688, 835
RseI CAYNNNNRTG 5 cut(s) 641, 659, 1285, 1480, 1482
SaqAI TTAA 2 cut(s) 875, 1407
SatI GCNGC 2 cut(s) 631, 634
Sau3AI GATC 8 cut(s) 538, 572, 679, 700, 895, 1083, 1291, 1360
Sau96I GGNCC 4 cut(s) 105, 612, 776, 1204
SchI GAGTC 3 cut(s) 794, 1355, 1409
ScrFI CCNGG 4 cut(s) 479, 498, 780, 1450
SexAI ACCWGGT 1 cut(s) 778
SfaNI GCATC 2 cut(s) 599, 1164
SfcI CTRYAG 2 cut(s) 307, 1018
SfuI TTCGAA 1 cut(s) 1060
SinI GGWCC 3 cut(s) 612, 776, 1204
SmiMI CAYNNNNRTG 5 cut(s) 641, 659, 1285, 1480, 1482
SmlI CTYRAG 2 cut(s) 625, 829
SmoI CTYRAG 2 cut(s) 625, 829
SphI GCATGC 1 cut(s) 231
Sse9I AATT 6 cut(s) 13, 543, 972, 978, 1126, 1325
SseBI AGGCCT 1 cut(s) 1317
SsiI CCGC 3 cut(s) 607, 631, 1150
SspMI CTAG 2 cut(s) 368, 413
StuI AGGCCT 1 cut(s) 1317
StyD4I CCNGG 4 cut(s) 477, 496, 778, 1448
TaaI ACNGT 6 cut(s) 253, 687, 692, 804, 880, 1412
TaiI ACGT 3 cut(s) 282, 300, 1237
TaqI TCGA 6 cut(s) 682, 703, 1060, 1102, 1349, 1398
TasI AATT 6 cut(s) 13, 543, 972, 978, 1126, 1325
TauI GCSGC 1 cut(s) 633
TfiI GAWTC 4 cut(s) 364, 557, 1104, 1419
Tru1I TTAA 2 cut(s) 875, 1407
Tru9I TTAA 2 cut(s) 875, 1407
TscAI CASTG 2 cut(s) 120, 697
TseFI GTSAC 3 cut(s) 728, 786, 796
TseI GCWGC 1 cut(s) 633
Tsp45I GTSAC 3 cut(s) 728, 786, 796
TspDTI ATGAA 7 cut(s) 90, 107, 207, 371, 935, 1003, 1068
TspGWI ACGGA 1 cut(s) 1062
TspRI CASTG 2 cut(s) 120, 697
VpaK11BI GGWCC 3 cut(s) 612, 776, 1204
XapI RAATTY 1 cut(s) 13
XbaI TCTAGA 1 cut(s) 367
XceI RCATGY 3 cut(s) 231, 658, 988
XcmI CCANNNNNNNNNTGG 1 cut(s) 856
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 2 cut(s) 368, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.