pycom11g24940

Type I inositol 1,4,5-trisphosphate 5-phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0012832
Physical Location & Seq
Forward (+)
27784401 .. 27787431
3031 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g24940.8

Sequence Viewer

Length: 1677 bp
ATGAGAGATGAGAATTCCAAGAAAAGCAAGCTTTCATGGCCCAAGACACTGGTCAAAAAATGGTTCAACATCAAGAGCAAAGCCGAGGACTTCGATGCAGACGACGCCGTTTACGGAGGTGTTGATGGAGAGTGGAGGAACAACCATTCAGAGAGGGAGGCATGCACAATCAAGAAAAGCAAAACAGAAAGATTGAGCAAGAGGCATTCGGATAGAATCCGGCGGGGTAAGATTGATATGGAAGCATCACAGGTTACAGATGTACATAATTACAGGATCTTTGTAGCTACATGGAATGTGGCTGGAAAATCTCCTCCGAGTTGTTTGAATCTCGAAGATTGGCTTCATACCTCTCCACCTGCTGATATTTATGTTCTTGGGTTCCAAGAAATAGTTCCTTTGAATGCCGGCAATGTTTTAGGCGCGGAAGACATCGCGCCAGCTAAAAAGTGGTTAGCTCTTATAAGGAAGACTCTAAATAATCTTCCTGGAACAAGCGGGGCTTTCCATACACCTTCGCCAGTAACTGATCCAATTGTAGAATTAGATGCGGACTTTGAGGGATCGGCAAGGGAGAAGGCCTCCTCTTTCTTTCATCGCAGGTCCTTTCAATCCTTGAGCCGCAGCATGAGAATGGACAATGACATGTCAATGCCGCAACCCAGACTTGATAGGCGATTCAGTGTTTGTGATCGGGTTATGTTTGGGCACATATCAAGTGATTATGATCCCAATTACAGATGGGGTTCCTCTGATGATGAGAATGTACCTGGTGATTCACCTGTTGTGACACATTATTCACCAATGTCCAACAGTGGGTCTTTCTCAATGGAGGATAGAGATAGACAGCTAGGCCACTCGAGATACTGCTTGGTTGCCAGCAAGCAAATGGTTGGTATATTTTTGACAGTGTGGGTAAAAAGTGATCTTCGACATGATGTTCGCAATTTGAAAGTGTCTTGTGTTGGAAGAGGATTAATGGGCTATCTCGGAAATAAGGGTTCAATTTCCATTAGCATGTCTTTGCATCAAACAAGTTTTTGCTTCATCTGTACTCATCTCACCTCTGGGCAAAAGGAAGGAGATGAACTTCGTAGAAATTCCGATGTCATGGAGATCCTTAGGAAGACAAGGTTTCCTCGGGTTAATGGCATGGGAGATGAAAACTCTCCTCAGACTATACTAGACCACGATCGAATTATCTGGCTTGGGGATTTGAATTATCGCATTGCCCTTTCTTACCGCTCTGCAAAAGCTCTTGTTGAGATGCGCAACTGGAGGGCATTGTTAGAGAATGACCAGCTACGAATAGAGCAACTAAGAGGACGCGTCTTTGAGGGATGGAATGAAGGGAGGATATATTTCCCTCCTACATACAAGTATCTAAATAATTCAGATCGGTATGCAGGCGATGATAGGCACACCAAGGAGAAGCGAAGAACTCCAGCATGGTGCGATCGTATATTATGGTACGGAAGAGGCCTCCAGCAACTGTCTTATGTTCGTGGGGAGTCAAGATTCTCAGATCATAGGCCAGTCTACGGTGTATTTCTGGCAGAGGTTGAGTCTATTAACCGTAGCCGAATCAAGAAAAGTATGAGTTGTTCCAGTTCCAGAATCGAGGTAGAGGAGCTGTTGCCACACTCCCATGCATACACCGGCCTCAATTTCTATTGA

Protein Analysis

559

Amino Acids

64.11

Weight (kDa)

9.07

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012832)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63240 AT3G63240
fragaria_vesca FvH4_2g23170
malus_domestica MD03G1261100.v1.1 MD11G1281400.v1.1
prunus_persica Prupe.8G236900_v2.0.a1
pyrus_communis pycom03g20850 pycom11g24940
rosa_chinensis RchiOBHm_Chr6g0290421
rosa_laevigata RLG00000012220
rosa_multiflora Rmu_sc0002890.1_g000001
rosa_roxburghii Rroxscaffold_7G00177080
rosa_rugosa Rorug06G0212600
rosa_samantha Rh6AG322600 Rh6BG330100 Rh6CG336100
rosa_wichuraiana Rw6G027880 Rw6G027970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 464
AarI CACCTGC 1 cut(s) 367
Acc16I TGCGCA 1 cut(s) 1271
Acc36I ACCTGC 2 cut(s) 367, 591
AccBSI CCGCTC 1 cut(s) 1245
AccI GTMKAC 1 cut(s) 1539
AccII CGCG 3 cut(s) 425, 437, 1329
AciI CCGC 7 cut(s) 223, 425, 498, 551, 622, 656, 1243
AclWI GGATC 5 cut(s) 284, 524, 571, 722, 1111
AcsI RAATTY 2 cut(s) 13, 1099
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 4 cut(s) 264, 768, 1054, 1472
AfiI CCNNNNNNNGG 2 cut(s) 816, 1541
AflIII ACRYGT 2 cut(s) 645, 1327
AgsI TTSAA 7 cut(s) 67, 328, 403, 611, 952, 1005, 1219
AjnI CCWGG 2 cut(s) 487, 769
AjuI GAANNNNNNNTTGG 2 cut(s) 378, 410
AluBI AGCT 8 cut(s) 31, 287, 443, 458, 850, 1256, 1303, 1633
AluI AGCT 8 cut(s) 31, 287, 443, 458, 850, 1256, 1303, 1633
AlwI GGATC 5 cut(s) 284, 524, 571, 722, 1111
AlwNI CAGNNNCTG 2 cut(s) 527, 1492
Ama87I CYCGRG 2 cut(s) 859, 1140
AoxI GGCC 6 cut(s) 38, 579, 853, 1480, 1532, 1660
ApeKI GCWGC 1 cut(s) 624
ApoI RAATTY 2 cut(s) 13, 1099
ArsI GACNNNNNNTTYG 2 cut(s) 924, 956
AseI ATTAAT 1 cut(s) 977
Asp700I GAANNNNTTC 1 cut(s) 393
AspLEI GCGC 3 cut(s) 425, 439, 1272
AspS9I GGNCC 2 cut(s) 39, 603
AsuHPI GGTGA 4 cut(s) 771, 785, 792, 1054
AvaI CYCGRG 2 cut(s) 859, 1140
AvaII GGWCC 1 cut(s) 603
AxyI CCTNAGG 1 cut(s) 1121
BaeGI GKGCMC 1 cut(s) 711
BbsI GAAGAC 3 cut(s) 435, 476, 1133
BbvI GCAGC 1 cut(s) 636
BccI CCATC 3 cut(s) 119, 735, 1335
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 2 cut(s) 489, 771
BfaI CTAG 2 cut(s) 851, 1184
BfuAI ACCTGC 2 cut(s) 367, 591
BisI GCNGC 3 cut(s) 622, 625, 656
BlsI GCNGC 3 cut(s) 623, 626, 657
Bme1390I CCNGG 2 cut(s) 489, 771
Bme18I GGWCC 1 cut(s) 603
BmeT110I CYCGRG 2 cut(s) 859, 1140
BmgT120I GGNCC 2 cut(s) 39, 603
BmiI GGNNCC 2 cut(s) 383, 748
BmrFI CCNGG 2 cut(s) 489, 771
BmsI GCATC 5 cut(s) 85, 254, 538, 1036, 1257
BoxI GACNNNNGTC 1 cut(s) 50
BpiI GAAGAC 3 cut(s) 435, 476, 1133
BplI GAGNNNNNCTC 2 cut(s) 566, 598
BpmI CTGGAG 3 cut(s) 1297, 1428, 1469
BpuEI CTTGAG 1 cut(s) 637
BsaBI GATNNNNATC 1 cut(s) 726
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 3 cut(s) 84, 1139, 1425
Bsc4I CCNNNNNNNGG 2 cut(s) 816, 1541
Bse118I RCCGGY 2 cut(s) 407, 1658
Bse1I ACTGG 5 cut(s) 54, 521, 1280, 1535, 1608
Bse21I CCTNAGG 1 cut(s) 1121
Bse3DI GCAATG 2 cut(s) 418, 1227
Bse8I GATNNNNATC 1 cut(s) 726
BseBI CCWGG 2 cut(s) 489, 771
BseDI CCNNGG 3 cut(s) 84, 1139, 1425
BseGI GGATG 1 cut(s) 1346
BseJI GATNNNNATC 1 cut(s) 726
BseLI CCNNNNNNNGG 2 cut(s) 816, 1541
BseMI GCAATG 2 cut(s) 418, 1227
BseMII CTCAG 2 cut(s) 1187, 1536
BseNI ACTGG 5 cut(s) 54, 521, 1280, 1535, 1608
BseRI GAGGAG 4 cut(s) 303, 574, 1161, 1643
BseSI GKGCMC 1 cut(s) 711
BseXI GCAGC 1 cut(s) 636
Bsh1236I CGCG 3 cut(s) 425, 437, 1329
Bsh1285I CGRYCG 2 cut(s) 1195, 1459
BshFI GGCC 6 cut(s) 40, 581, 855, 1482, 1534, 1662
BsiEI CGRYCG 2 cut(s) 1195, 1459
BsiHKCI CYCGRG 2 cut(s) 859, 1140
BsiSI CCGG 3 cut(s) 220, 408, 1659
BslI CCNNNNNNNGG 2 cut(s) 816, 1541
BsmI GAATGC 2 cut(s) 205, 409
BsnI GGCC 6 cut(s) 40, 581, 855, 1482, 1534, 1662
BsoBI CYCGRG 2 cut(s) 859, 1140
Bsp1286I GDGCHC 1 cut(s) 711
Bsp1407I TGTACA 1 cut(s) 262
BspACI CCGC 7 cut(s) 223, 425, 498, 551, 622, 656, 1243
BspANI GGCC 6 cut(s) 40, 581, 855, 1482, 1534, 1662
BspCNI CTCAG 2 cut(s) 1186, 1535
BspFNI CGCG 3 cut(s) 425, 437, 1329
BspLI GGNNCC 2 cut(s) 383, 748
BspMI ACCTGC 2 cut(s) 367, 591
BspPI GGATC 5 cut(s) 284, 524, 571, 722, 1111
BsrBI CCGCTC 1 cut(s) 1245
BsrDI GCAATG 2 cut(s) 418, 1227
BsrFI RCCGGY 2 cut(s) 407, 1658
BsrGI TGTACA 1 cut(s) 262
BsrI ACTGG 5 cut(s) 54, 521, 1280, 1535, 1608
BssAI RCCGGY 2 cut(s) 407, 1658
BssECI CCNNGG 3 cut(s) 84, 1139, 1425
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 1425
Bst2UI CCWGG 2 cut(s) 489, 771
Bst4CI ACNGT 5 cut(s) 815, 910, 1494, 1544, 1577
Bst6I CTCTTC 2 cut(s) 964, 1471
BstACI GRCGYC 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 262
BstC8I GCNNGC 7 cut(s) 29, 163, 409, 441, 880, 884, 1408
BstDEI CTNAG 4 cut(s) 1121, 1173, 1319, 1522
BstF5I GGATG 1 cut(s) 1346
BstFNI CGCG 3 cut(s) 425, 437, 1329
BstHHI GCGC 3 cut(s) 425, 439, 1272
BstMCI CGRYCG 2 cut(s) 1195, 1459
BstMWI GCNNNNNNNGC 2 cut(s) 37, 104
BstNI CCWGG 2 cut(s) 489, 771
BstNSI RCATGY 3 cut(s) 165, 649, 1021
BstPAI GACNNNNGTC 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 487, 769
BstSLI GKGCMC 1 cut(s) 711
BstUI CGCG 3 cut(s) 425, 437, 1329
BstV1I GCAGC 1 cut(s) 636
BstV2I GAAGAC 3 cut(s) 435, 476, 1133
BstX2I RGATCY 2 cut(s) 276, 1116
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 2 cut(s) 276, 1116
Bsu36I CCTNAGG 1 cut(s) 1121
BsuRI GGCC 6 cut(s) 40, 581, 855, 1482, 1534, 1662
BtgZI GCGATG 3 cut(s) 418, 581, 1425
BtsCI GGATG 1 cut(s) 1346
BtsIMutI CAGTG 4 cut(s) 47, 688, 820, 915
BveI ACCTGC 2 cut(s) 367, 591
Cac8I GCNNGC 7 cut(s) 29, 163, 409, 441, 880, 884, 1408
CaiI CAGNNNCTG 2 cut(s) 527, 1492
CfoI GCGC 3 cut(s) 425, 439, 1272
Cfr10I RCCGGY 2 cut(s) 407, 1658
Cfr13I GGNCC 2 cut(s) 39, 603
CseI GACGC 3 cut(s) 113, 1318, 1335
CsiI ACCWGGT 1 cut(s) 769
Csp6I GTAC 4 cut(s) 263, 767, 1053, 1471
CviQI GTAC 4 cut(s) 263, 767, 1053, 1471
DdeI CTNAG 4 cut(s) 1121, 1173, 1319, 1522
Eam1104I CTCTTC 2 cut(s) 964, 1471
EarI CTCTTC 2 cut(s) 964, 1471
Eco130I CCWWGG 1 cut(s) 1425
Eco147I AGGCCT 2 cut(s) 581, 1482
Eco47I GGWCC 1 cut(s) 603
Eco81I CCTNAGG 1 cut(s) 1121
Eco88I CYCGRG 2 cut(s) 859, 1140
EcoO109I RGGNCCY 1 cut(s) 603
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 2 cut(s) 487, 769
EcoT14I CCWWGG 1 cut(s) 1425
EcoT22I ATGCAT 1 cut(s) 1654
ErhI CCWWGG 1 cut(s) 1425
FalI AAGNNNNNCTT 4 cut(s) 327, 359, 487, 519
FauI CCCGC 2 cut(s) 216, 491
FblI GTMKAC 1 cut(s) 1539
Fnu4HI GCNGC 3 cut(s) 622, 625, 656
FokI GGATG 1 cut(s) 1353
Fsp4HI GCNGC 3 cut(s) 622, 625, 656
FspBI CTAG 2 cut(s) 851, 1184
FspI TGCGCA 1 cut(s) 1271
GlaI GCGC 3 cut(s) 424, 438, 1271
GluI GCNGC 3 cut(s) 622, 625, 656
GsuI CTGGAG 3 cut(s) 1297, 1428, 1469
HaeIII GGCC 6 cut(s) 40, 581, 855, 1482, 1534, 1662
HapII CCGG 3 cut(s) 220, 408, 1659
HgaI GACGC 3 cut(s) 113, 1318, 1335
HhaI GCGC 3 cut(s) 425, 439, 1272
Hin1I GRCGYC 1 cut(s) 105
Hin6I GCGC 3 cut(s) 423, 437, 1270
HinP1I GCGC 3 cut(s) 423, 437, 1270
HindIII AAGCTT 1 cut(s) 29
HpaII CCGG 3 cut(s) 220, 408, 1659
HphI GGTGA 4 cut(s) 771, 785, 792, 1054
Hpy166II GTNNAC 2 cut(s) 112, 1540
Hpy188I TCNGA 9 cut(s) 151, 211, 318, 754, 992, 1105, 1176, 1396, 1525
Hpy188III TCNNGA 7 cut(s) 73, 172, 332, 861, 1515, 1588, 1614
Hpy8I GTNNAC 2 cut(s) 112, 1540
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 4 cut(s) 525, 571, 1073, 1343
HpyCH4III ACNGT 5 cut(s) 815, 910, 1494, 1544, 1577
HpyCH4V TGCA 6 cut(s) 98, 165, 1027, 1250, 1406, 1652
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 104
HpyF3I CTNAG 4 cut(s) 1121, 1173, 1319, 1522
Hsp92I GRCGYC 1 cut(s) 105
HspAI GCGC 3 cut(s) 423, 437, 1270
KroI GCCGGC 1 cut(s) 407
KroNI GCCGGC 1 cut(s) 409
LmnI GCTCC 1 cut(s) 1630
Lsp1109I GCAGC 1 cut(s) 636
LweI GCATC 5 cut(s) 85, 254, 538, 1036, 1257
MabI ACCWGGT 1 cut(s) 769
MaeI CTAG 2 cut(s) 851, 1184
MaeIII GTNAC 3 cut(s) 253, 523, 787
MbiI CCGCTC 1 cut(s) 1245
MboII GAAGA 9 cut(s) 347, 440, 476, 481, 920, 981, 1138, 1449, 1488
MfeI CAATTG 1 cut(s) 534
MflI RGATCY 2 cut(s) 276, 1116
MhlI GDGCHC 1 cut(s) 711
MluI ACGCGT 1 cut(s) 1327
MlyI GAGTC 3 cut(s) 466, 1520, 1574
MmeI TCCRAC 2 cut(s) 834, 946
Mph1103I ATGCAT 1 cut(s) 1654
MroNI GCCGGC 1 cut(s) 407
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 3 cut(s) 977, 1146, 1572
MslI CAYNNNNRTG 4 cut(s) 632, 650, 1016, 1647
MspI CCGG 3 cut(s) 220, 408, 1659
MspR9I CCNGG 2 cut(s) 489, 771
MunI CAATTG 1 cut(s) 534
Mva1269I GAATGC 2 cut(s) 205, 409
MvaI CCWGG 2 cut(s) 489, 771
MvnI CGCG 3 cut(s) 425, 437, 1329
MwoI GCNNNNNNNGC 2 cut(s) 37, 104
NaeI GCCGGC 1 cut(s) 409
NgoMIV GCCGGC 1 cut(s) 407
NlaIV GGNNCC 2 cut(s) 383, 748
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 787
NsbI TGCGCA 1 cut(s) 1271
NsiI ATGCAT 1 cut(s) 1654
NspI RCATGY 3 cut(s) 165, 649, 1021
PaeI GCATGC 1 cut(s) 165
PaeR7I CTCGAG 1 cut(s) 859
PaqCI CACCTGC 1 cut(s) 367
PceI AGGCCT 2 cut(s) 581, 1482
PciI ACATGT 1 cut(s) 645
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PctI GAATGC 2 cut(s) 205, 409
PdiI GCCGGC 1 cut(s) 409
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 7 cut(s) 216, 328, 678, 776, 1518, 1584, 1617
PfoI TCCNGGA 1 cut(s) 487
PkrI GCNGC 3 cut(s) 623, 626, 657
Ple19I CGATCG 2 cut(s) 1195, 1459
PleI GAGTC 3 cut(s) 466, 1519, 1573
PpsI GAGTC 3 cut(s) 466, 1519, 1573
PpuMI RGGWCCY 1 cut(s) 603
PscI ACATGT 1 cut(s) 645
PshAI GACNNNNGTC 1 cut(s) 50
PshBI ATTAAT 1 cut(s) 977
PsiI TTATAA 1 cut(s) 464
Psp5II RGGWCCY 1 cut(s) 603
Psp6I CCWGG 2 cut(s) 487, 769
PspGI CCWGG 2 cut(s) 487, 769
PspN4I GGNNCC 2 cut(s) 383, 748
PspPI GGNCC 2 cut(s) 39, 603
PspPPI RGGWCCY 1 cut(s) 603
PsrI GAACNNNNNNTAC 2 cut(s) 1588, 1620
PstNI CAGNNNCTG 2 cut(s) 527, 1492
PsuI RGATCY 2 cut(s) 276, 1116
PvuI CGATCG 2 cut(s) 1195, 1459
RsaI GTAC 4 cut(s) 264, 768, 1054, 1472
RsaNI GTAC 4 cut(s) 263, 767, 1053, 1471
RseI CAYNNNNRTG 4 cut(s) 632, 650, 1016, 1647
SaqAI TTAA 3 cut(s) 977, 1146, 1572
SatI GCNGC 3 cut(s) 622, 625, 656
Sau96I GGNCC 2 cut(s) 39, 603
SchI GAGTC 3 cut(s) 466, 1520, 1574
ScrFI CCNGG 2 cut(s) 489, 771
SduI GDGCHC 1 cut(s) 711
SexAI ACCWGGT 1 cut(s) 769
SfaNI GCATC 5 cut(s) 85, 254, 538, 1036, 1257
Sfr274I CTCGAG 1 cut(s) 859
SinI GGWCC 1 cut(s) 603
SlaI CTCGAG 1 cut(s) 859
SmiMI CAYNNNNRTG 4 cut(s) 632, 650, 1016, 1647
SmlI CTYRAG 2 cut(s) 616, 859
SmoI CTYRAG 2 cut(s) 616, 859
SphI GCATGC 1 cut(s) 165
SseBI AGGCCT 2 cut(s) 581, 1482
SsiI CCGC 7 cut(s) 223, 425, 498, 551, 622, 656, 1243
SspMI CTAG 2 cut(s) 851, 1184
StuI AGGCCT 2 cut(s) 581, 1482
StyD4I CCNGG 2 cut(s) 487, 769
StyI CCWWGG 1 cut(s) 1425
TaaI ACNGT 5 cut(s) 815, 910, 1494, 1544, 1577
TaqI TCGA 6 cut(s) 93, 333, 860, 931, 1195, 1620
TatI WGTACW 2 cut(s) 262, 1052
TauI GCSGC 2 cut(s) 624, 658
TfiI GAWTC 7 cut(s) 216, 328, 678, 776, 1518, 1584, 1617
Tru1I TTAA 3 cut(s) 977, 1146, 1572
Tru9I TTAA 3 cut(s) 977, 1146, 1572
TscAI CASTG 4 cut(s) 54, 688, 820, 915
TseFI GTSAC 1 cut(s) 787
TseI GCWGC 1 cut(s) 624
Tsp45I GTSAC 1 cut(s) 787
TspDTI ATGAA 7 cut(s) 24, 335, 584, 1036, 1101, 1176, 1362
TspGWI ACGGA 2 cut(s) 129, 1488
TspRI CASTG 4 cut(s) 54, 688, 820, 915
VpaK11BI GGWCC 1 cut(s) 603
VspI ATTAAT 1 cut(s) 977
XapI RAATTY 2 cut(s) 13, 1099
XceI RCATGY 3 cut(s) 165, 649, 1021
XcmI CCANNNNNNNNNTGG 2 cut(s) 447, 886
XhoI CTCGAG 1 cut(s) 859
XmiI GTMKAC 1 cut(s) 1539
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 2 cut(s) 851, 1184
Zsp2I ATGCAT 1 cut(s) 1654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.