Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0012832

Physical Location & Seq

Genomic Coordinates Forward (+)

51924282 .. 51929104

Gene Structure 4823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G027970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1677 bp

ATGATAGATGGGAATTCAAAGAAAAGCAAGCTTTCATGGCCCAAGACACTGGTCAAGAAGTGGCTCAACATCAAGAGCAAAGCTGAGGATTTTCACGCAGACGATGTTGTTTATGGAGGTGGTGATGAAGAGTGGAGGAACAACTATTCAGAGAGGGAAGCATGCACAATCAAGAAAAGCAAAACAGAAAGGTTAAGCAAGAGGCACTCTGATAAAGTCCGGCGAGGTAAGATTGACATGGACGTATCACAGGTTACAGACGTACAAAACTATAGGATTTTTGTAGCTACATGGAATGTGGCTGGAAAATCTCCTCCGAGTTATTTGAATCTAGAAGATTGGCTTCATACCTCTCCTCCTGCTGACATTTATGTTCTAGGGTTTCAAGAAATAGTTCCTTTGAATGCTGGCAATGTGTTGGGGACAGAGGACAATGCCCCGGCTAAAAAATGGGTAGCCCTTATAAGGAAGACTCTAAATAGTCTTCCCGGCACAAGTGGTGGTTGCCATACACCTTCGCCAGTTCCTGATCCAATTGTGGAGTTGGATTCAGACTTTGAGGGATCAACAAGGCAGAAGGCATCCTCCTTCTTCCACCGCCGGTCCTTTCAATCCTTGAGCCGCAGCATGAGAATGGAGAATGACATGTCAATGCCACAACCCCAGCTTGATCGACGGTACAGTGTTTGTGATCGAGTTATTTTTGGGAATAGACCGAGTGACTATGACCCCAATGTAAGATGGGGTTCCTCTGATGATGATAATGGACCTGGTGAGTCACCTGTTGTCACACAGTATTCACCAATGTCCAATAGTGGATCATTTTCAATAGAGGATAGAGAAAGACAGCAAGGGAACTCAAGGTACTGCTTGGTTGCCAGCAAGCAAATGGTTGGGATATTTTTAACGGTGTGGGTGAGAAGTGATCTCAGAGATGATGTTCGCAATATGAAGGTGTCTTGTGTTGGCAGAGGATTGATGGGCTATCTTGGAAATAAGGGTTCAATTTCAATTAGCATGTCCTTGCACCAAACAAGCTTCTGCTTCATCTGTAGTCATCTAACCTCTGGGCAGAAGGACGGAGATGAACTTCGAAGAAACTCTGATGTCTTGGAGATCCTTAGGAAGACAAGGTTTCCCAGGGTTAATGGAATGGGAGATGAAAGCTCTCCTCAGACTATACTAGAGCATGATCGAATCATTTGGCTCGGTGATTTGAATTATCGCATTGCCCTTTCTTACCGCTATGCAAAAGCTCTTGTTGAGATGCGCAACTGGAGGGCATTGTTAGAGAAGGACCAGCTGAGGATAGAGCAGAGACGAGGACGTGTCTTTGAGGGATGGAGTGAAGGGAAGATATATTTCCCTCCGACATACAAGTATTTGAACAATTCAGATAGGTATGCCGGTGAAGATAGGCACAACAAGGAGAAGCGAAGAACTCCAGCATGGTGTGATCGTATATTATGGCATGGAAGAGGCCTCCTTCAATTGTCCTATGTTCGTGGGGAGTCGAGGTTCTCAGATCACAGGCCAGTTTACAGCGTATTTCTGGCAGAGGTCGAGTCCATTAACCGTAACCGAATCAAGAAAAGCATGAGTTGTTCCAGTTCCAGGATTGAGGTAGAGGAGCTGTTGCCACACTCGTGTGGATACTCCCAACTAAATTTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052866 GO:0071704 GO:0106019

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

558

Amino Acids

64.04

Weight (kDa)

9.12

Isoelectric Point (pI)

57.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	97 - 161	3.8e-07	Endonuclease/Exonuclease/phosphatase family 2
Exo_endo_phos2	PF22669	282 - 515	2.5e-63	Endonuclease/Exonuclease/phosphatase family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63240 AT3G63240
fragaria_vesca	FvH4_2g23170
malus_domestica	MD03G1261100.v1.1 MD11G1281400.v1.1
prunus_persica	Prupe.8G236900_v2.0.a1
pyrus_communis	pycom03g20850 pycom11g24940
rosa_chinensis	RchiOBHm_Chr6g0290421
rosa_laevigata	RLG00000012220
rosa_multiflora	Rmu_sc0002890.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177080
rosa_rugosa	Rorug06G0212600
rosa_samantha	Rh6AG322600 Rh6BG330100 Rh6CG336100
rosa_wichuraiana	Rw6G027880 Rw6G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
Acc16I	TGCGCA	1 cut(s)	1271
AciI	CCGC	3 cut(s)	598, 622, 1243
AclWI	GGATC	4 cut(s)	524, 571, 826, 1111
AcsI	RAATTY	2 cut(s)	13, 1666
AfaI	GTAC	3 cut(s)	264, 680, 866
AfiI	CCNNNNNNNGG	2 cut(s)	465, 1614
AflIII	ACRYGT	2 cut(s)	645, 1327
AjiI	CACGTC	1 cut(s)	1328
AjnI	CCWGG	3 cut(s)	769, 1139, 1613
AleI	CACNNNNGTG	2 cut(s)	1645, 1647
AloI	GAACNNNNNNTCC	2 cut(s)	1502, 1534
AluBI	AGCT	9 cut(s)	31, 83, 287, 667, 1038, 1167, 1256, 1303, 1633
AluI	AGCT	9 cut(s)	31, 83, 287, 667, 1038, 1167, 1256, 1303, 1633
Alw26I	GTCTC	1 cut(s)	1312
AlwI	GGATC	4 cut(s)	524, 571, 826, 1111
AlwNI	CAGNNNCTG	1 cut(s)	527
AoxI	GGCC	3 cut(s)	38, 1480, 1532
ApeKI	GCWGC	1 cut(s)	624
ApoI	RAATTY	2 cut(s)	13, 1666
Asp700I	GAANNNNTTC	1 cut(s)	393
AspLEI	GCGC	1 cut(s)	1272
AspS9I	GGNCC	4 cut(s)	39, 603, 767, 1297
AsuC2I	CCSGG	2 cut(s)	440, 489
AsuHPI	GGTGA	7 cut(s)	134, 771, 785, 792, 928, 1223, 1421
AsuII	TTCGAA	1 cut(s)	1093
AvaII	GGWCC	3 cut(s)	603, 767, 1297
AxyI	CCTNAGG	1 cut(s)	1121
BauI	CACGAG	1 cut(s)	1645
BbsI	GAAGAC	3 cut(s)	476, 476, 1133
BbvCI	CCTCAGC	2 cut(s)	84, 1304
BbvI	GCAGC	1 cut(s)	636
BccI	CCATC	4 cut(s)	2, 735, 973, 1335
BciT130I	CCWGG	3 cut(s)	771, 1141, 1615
BciVI	GTATCC	1 cut(s)	1646
BcnI	CCSGG	2 cut(s)	440, 489
BcoDI	GTCTC	1 cut(s)	1312
BfaI	CTAG	3 cut(s)	332, 377, 1184
BfmI	CTRYAG	2 cut(s)	271, 1051
BfuI	GTATCC	1 cut(s)	1646
BisI	GCNGC	2 cut(s)	622, 625
BlsI	GCNGC	2 cut(s)	623, 626
Bme1390I	CCNGG	5 cut(s)	440, 489, 771, 1141, 1615
Bme18I	GGWCC	3 cut(s)	603, 767, 1297
BmgBI	CACGTC	1 cut(s)	1328
BmgT120I	GGNCC	4 cut(s)	39, 603, 767, 1297
BmiI	GGNNCC	1 cut(s)	748
BmrFI	CCNGG	5 cut(s)	440, 489, 771, 1141, 1615
BmsI	GCATC	2 cut(s)	590, 1257
BoxI	GACNNNNGTC	1 cut(s)	50
BpiI	GAAGAC	3 cut(s)	476, 476, 1133
BpmI	CTGGAG	2 cut(s)	1297, 1428
Bpu10I	CCTNAGC	2 cut(s)	84, 1304
Bpu14I	TTCGAA	1 cut(s)	1093
BpuEI	CTTGAG	2 cut(s)	637, 844
BpuMI	CCSGG	2 cut(s)	440, 489
BsaJI	CCNNGG	3 cut(s)	438, 1139, 1140
BsaXI	ACNNNNNCTCC	4 cut(s)	340, 370, 1502, 1532
Bsc4I	CCNNNNNNNGG	2 cut(s)	465, 1614
Bse118I	RCCGGY	2 cut(s)	600, 1406
Bse1I	ACTGG	5 cut(s)	54, 521, 1280, 1535, 1608
Bse21I	CCTNAGG	1 cut(s)	1121
Bse3DI	GCAATG	2 cut(s)	418, 1227
BseBI	CCWGG	3 cut(s)	771, 1141, 1615
BseDI	CCNNGG	3 cut(s)	438, 1139, 1140
BseGI	GGATG	2 cut(s)	581, 1346
BseLI	CCNNNNNNNGG	2 cut(s)	465, 1614
BseMI	GCAATG	2 cut(s)	418, 1227
BseMII	CTCAG	5 cut(s)	75, 943, 1187, 1295, 1536
BseNI	ACTGG	5 cut(s)	54, 521, 1280, 1535, 1608
BseRI	GAGGAG	4 cut(s)	303, 345, 1161, 1643
BseXI	GCAGC	1 cut(s)	636
BseYI	CCCAGC	1 cut(s)	663
BshFI	GGCC	3 cut(s)	40, 1482, 1534
BsiSI	CCGG	5 cut(s)	220, 440, 489, 601, 1407
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	2 cut(s)	465, 1614
BsmAI	GTCTC	1 cut(s)	1312
BsmBI	CGTCTC	1 cut(s)	1312
BsmFI	GGGAC	1 cut(s)	436
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	3 cut(s)	40, 1482, 1534
Bsp119I	TTCGAA	1 cut(s)	1093
BspACI	CCGC	3 cut(s)	598, 622, 1243
BspANI	GGCC	3 cut(s)	40, 1482, 1534
BspCNI	CTCAG	5 cut(s)	76, 942, 1186, 1296, 1535
BspLI	GGNNCC	1 cut(s)	748
BspPI	GGATC	4 cut(s)	524, 571, 826, 1111
BspT104I	TTCGAA	1 cut(s)	1093
BsrDI	GCAATG	2 cut(s)	418, 1227
BsrFI	RCCGGY	2 cut(s)	600, 1406
BsrI	ACTGG	5 cut(s)	54, 521, 1280, 1535, 1608
BssAI	RCCGGY	2 cut(s)	600, 1406
BssECI	CCNNGG	3 cut(s)	438, 1139, 1140
BssSI	CACGAG	1 cut(s)	1645
Bst2BI	CACGAG	1 cut(s)	1645
Bst2UI	CCWGG	3 cut(s)	771, 1141, 1615
Bst4CI	ACNGT	5 cut(s)	678, 683, 795, 910, 1577
Bst6I	CTCTTC	2 cut(s)	123, 1471
BstBI	TTCGAA	1 cut(s)	1093
BstC8I	GCNNGC	5 cut(s)	29, 163, 409, 880, 884
BstDEI	CTNAG	6 cut(s)	84, 929, 1121, 1173, 1304, 1522
BstF5I	GGATG	2 cut(s)	581, 1346
BstHHI	GCGC	1 cut(s)	1272
BstMAI	GTCTC	1 cut(s)	1312
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	3 cut(s)	771, 1141, 1615
BstNSI	RCATGY	3 cut(s)	165, 649, 1021
BstPAI	GACNNNNGTC	1 cut(s)	50
BstSCI	CCNGG	5 cut(s)	438, 487, 769, 1139, 1613
BstSFI	CTRYAG	2 cut(s)	271, 1051
BstV1I	GCAGC	1 cut(s)	636
BstV2I	GAAGAC	3 cut(s)	476, 476, 1133
BstX2I	RGATCY	1 cut(s)	1116
BstXI	CCANNNNNNTGG	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	1116
Bsu36I	CCTNAGG	1 cut(s)	1121
BsuI	GTATCC	1 cut(s)	1646
BsuRI	GGCC	3 cut(s)	40, 1482, 1534
BtrI	CACGTC	1 cut(s)	1328
BtsCI	GGATG	2 cut(s)	581, 1346
BtsIMutI	CAGTG	2 cut(s)	47, 688
Cac8I	GCNNGC	5 cut(s)	29, 163, 409, 880, 884
CaiI	CAGNNNCTG	1 cut(s)	527
CfoI	GCGC	1 cut(s)	1272
Cfr10I	RCCGGY	2 cut(s)	600, 1406
Cfr13I	GGNCC	4 cut(s)	39, 603, 767, 1297
CsiI	ACCWGGT	1 cut(s)	769
Csp6I	GTAC	3 cut(s)	263, 679, 865
CviQI	GTAC	3 cut(s)	263, 679, 865
DdeI	CTNAG	6 cut(s)	84, 929, 1121, 1173, 1304, 1522
Eam1104I	CTCTTC	2 cut(s)	123, 1471
EarI	CTCTTC	2 cut(s)	123, 1471
Eco147I	AGGCCT	1 cut(s)	1482
Eco47I	GGWCC	3 cut(s)	603, 767, 1297
Eco81I	CCTNAGG	1 cut(s)	1121
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	3 cut(s)	769, 1139, 1613
Esp3I	CGTCTC	1 cut(s)	1312
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	1 cut(s)	436
Fnu4HI	GCNGC	2 cut(s)	622, 625
FokI	GGATG	2 cut(s)	568, 1353
Fsp4HI	GCNGC	2 cut(s)	622, 625
FspBI	CTAG	3 cut(s)	332, 377, 1184
FspI	TGCGCA	1 cut(s)	1271
GlaI	GCGC	1 cut(s)	1271
GluI	GCNGC	2 cut(s)	622, 625
GsaI	CCCAGC	1 cut(s)	667
GsuI	CTGGAG	2 cut(s)	1297, 1428
HaeIII	GGCC	3 cut(s)	40, 1482, 1534
HapII	CCGG	5 cut(s)	220, 440, 489, 601, 1407
HhaI	GCGC	1 cut(s)	1272
Hin6I	GCGC	1 cut(s)	1270
HinP1I	GCGC	1 cut(s)	1270
HindIII	AAGCTT	2 cut(s)	29, 1036
HinfI	GANTC	8 cut(s)	328, 472, 548, 776, 1197, 1511, 1565, 1584
HpaII	CCGG	5 cut(s)	220, 440, 489, 601, 1407
HphI	GGTGA	7 cut(s)	134, 771, 785, 792, 928, 1223, 1421
Hpy166II	GTNNAC	1 cut(s)	1540
Hpy188III	TCNNGA	7 cut(s)	55, 73, 172, 332, 386, 527, 1588
Hpy8I	GTNNAC	1 cut(s)	1540
Hpy99I	CGWCG	1 cut(s)	678
HpyAV	CCTTC	8 cut(s)	525, 571, 598, 946, 1069, 1288, 1343, 1496
HpyCH4III	ACNGT	5 cut(s)	678, 683, 795, 910, 1577
HpyCH4IV	ACGT	3 cut(s)	243, 261, 1327
HpyCH4V	TGCA	3 cut(s)	165, 1027, 1250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	6 cut(s)	84, 929, 1121, 1173, 1304, 1522
HpySE526I	ACGT	3 cut(s)	243, 261, 1327
HspAI	GCGC	1 cut(s)	1270
LmnI	GCTCC	1 cut(s)	1630
Lsp1109I	GCAGC	1 cut(s)	636
LweI	GCATC	2 cut(s)	590, 1257
MabI	ACCWGGT	1 cut(s)	769
MaeI	CTAG	3 cut(s)	332, 377, 1184
MaeII	ACGT	3 cut(s)	243, 261, 1327
MaeIII	GTNAC	5 cut(s)	253, 719, 777, 787, 1577
MfeI	CAATTG	2 cut(s)	534, 1490
MflI	RGATCY	1 cut(s)	1116
MluCI	AATT	8 cut(s)	13, 534, 1005, 1011, 1219, 1390, 1490, 1666
MlyI	GAGTC	4 cut(s)	466, 785, 1520, 1574
MmeI	TCCRAC	2 cut(s)	525, 1394
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	4 cut(s)	194, 905, 1146, 1572
MslI	CAYNNNNRTG	4 cut(s)	632, 650, 1645, 1647
MspA1I	CMGCKG	1 cut(s)	1303
MspI	CCGG	5 cut(s)	220, 440, 489, 601, 1407
MspR9I	CCNGG	5 cut(s)	440, 489, 771, 1141, 1615
MunI	CAATTG	2 cut(s)	534, 1490
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	3 cut(s)	771, 1141, 1615
MwoI	GCNNNNNNNGC	1 cut(s)	37
NciI	CCSGG	2 cut(s)	440, 489
NlaIV	GGNNCC	1 cut(s)	748
NmuCI	GTSAC	3 cut(s)	719, 777, 787
NsbI	TGCGCA	1 cut(s)	1271
NspI	RCATGY	3 cut(s)	165, 649, 1021
NspV	TTCGAA	1 cut(s)	1093
OliI	CACNNNNGTG	2 cut(s)	1645, 1647
PaeI	GCATGC	1 cut(s)	165
PasI	CCCWGGG	1 cut(s)	1140
PceI	AGGCCT	1 cut(s)	1482
PciI	ACATGT	1 cut(s)	645
PctI	GAATGC	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	4 cut(s)	328, 548, 1197, 1584
PfoI	TCCNGGA	1 cut(s)	1613
PkrI	GCNGC	2 cut(s)	623, 626
PleI	GAGTC	4 cut(s)	466, 784, 1519, 1573
PpsI	GAGTC	4 cut(s)	466, 784, 1519, 1573
PscI	ACATGT	1 cut(s)	645
PshAI	GACNNNNGTC	1 cut(s)	50
PsiI	TTATAA	1 cut(s)	464
Psp6I	CCWGG	3 cut(s)	769, 1139, 1613
PspFI	CCCAGC	1 cut(s)	663
PspGI	CCWGG	3 cut(s)	769, 1139, 1613
PspN4I	GGNNCC	1 cut(s)	748
PspPI	GGNCC	4 cut(s)	39, 603, 767, 1297
PsrI	GAACNNNNNNTAC	2 cut(s)	848, 880
PstNI	CAGNNNCTG	1 cut(s)	527
PsuI	RGATCY	1 cut(s)	1116
PvuII	CAGCTG	1 cut(s)	1303
RsaI	GTAC	3 cut(s)	264, 680, 866
RsaNI	GTAC	3 cut(s)	263, 679, 865
RseI	CAYNNNNRTG	4 cut(s)	632, 650, 1645, 1647
SaqAI	TTAA	4 cut(s)	194, 905, 1146, 1572
SatI	GCNGC	2 cut(s)	622, 625
Sau96I	GGNCC	4 cut(s)	39, 603, 767, 1297
SchI	GAGTC	4 cut(s)	466, 785, 1520, 1574
ScrFI	CCNGG	5 cut(s)	440, 489, 771, 1141, 1615
SexAI	ACCWGGT	1 cut(s)	769
SfaNI	GCATC	2 cut(s)	590, 1257
SfcI	CTRYAG	2 cut(s)	271, 1051
SfuI	TTCGAA	1 cut(s)	1093
SinI	GGWCC	3 cut(s)	603, 767, 1297
SmiMI	CAYNNNNRTG	4 cut(s)	632, 650, 1645, 1647
SmlI	CTYRAG	2 cut(s)	616, 859
SmoI	CTYRAG	2 cut(s)	616, 859
SphI	GCATGC	1 cut(s)	165
Sse9I	AATT	8 cut(s)	13, 534, 1005, 1011, 1219, 1390, 1490, 1666
SseBI	AGGCCT	1 cut(s)	1482
SsiI	CCGC	3 cut(s)	598, 622, 1243
SspMI	CTAG	3 cut(s)	332, 377, 1184
StuI	AGGCCT	1 cut(s)	1482
StyD4I	CCNGG	5 cut(s)	438, 487, 769, 1139, 1613
TaaI	ACNGT	5 cut(s)	678, 683, 795, 910, 1577
TaiI	ACGT	3 cut(s)	246, 264, 1330
TaqI	TCGA	6 cut(s)	673, 694, 1093, 1195, 1514, 1563
TaqII	GACCGA	1 cut(s)	730
TasI	AATT	8 cut(s)	13, 534, 1005, 1011, 1219, 1390, 1490, 1666
TauI	GCSGC	1 cut(s)	624
TfiI	GAWTC	4 cut(s)	328, 548, 1197, 1584
Tru1I	TTAA	4 cut(s)	194, 905, 1146, 1572
Tru9I	TTAA	4 cut(s)	194, 905, 1146, 1572
TscAI	CASTG	2 cut(s)	54, 688
TseFI	GTSAC	3 cut(s)	719, 777, 787
TseI	GCWGC	1 cut(s)	624
Tsp45I	GTSAC	3 cut(s)	719, 777, 787
TspDTI	ATGAA	7 cut(s)	24, 141, 335, 965, 1036, 1101, 1176
TspGWI	ACGGA	1 cut(s)	1095
TspRI	CASTG	2 cut(s)	54, 688
VpaK11BI	GGWCC	3 cut(s)	603, 767, 1297
XapI	RAATTY	2 cut(s)	13, 1666
XbaI	TCTAGA	1 cut(s)	331
XceI	RCATGY	3 cut(s)	165, 649, 1021
XcmI	CCANNNNNNNNNTGG	1 cut(s)	886
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	3 cut(s)	332, 377, 1184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.