Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002890.1

Orthogroup ID

OG0012832

Physical Location & Seq

Genomic Coordinates Forward (+)

6989 .. 11043

Gene Structure 4055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002890.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1818 bp

atgaagctttcatggcccaagacactggtcaagaagtggctcaacatcaagagcaaagctgaggattttcacgcagacgatgttgtttgtggaggtggtgatgaagagtggaggaacaactattcagagagagaagcatgcacaatcaagaaaagcaaaacagaaaggttaagcaagaggcactctgataaagtccggcgaggtaagattgacatggacgtatcacaggttacagacgtacaaaactataggatttttgtagctacatggaatgtggctggaaaatctcctccgagttatttgaatctagaagattggcttcatacctctcctcctgctgacatttatgttctagggtttcaagaaatagttcctttgaatgctggcaatgtgttggggacagaggacaatgccccggctaaaaaatgggtagcccttataaggaagactctaaatagccttcctggcacaagtggtggttgccatacaccttcgccagttcctgatccaattgtggagttggattcagactttgagggatcaacaaggcagaaggcctcctccttcttccaccgccggtcctttcaatccttgagccgcagcatgagaatggagaatgacatgtcaatgccacaaccccagcttgatcgacggtacagtgtttgtgatcgagttatttttgggaatagaccgagtgactatgaccccaatgtaagatggggttcctctgatgatgataatggacctggtgagtcacctgttgtcacacagtattcaccaatgtccaatagtggatcattttcaatagaggatagagaaagacagcaagggaactcaaggtactgcttggttgccagcaagcaaatggttgggatatttttaacggtgtgggtgagaagtgatctcagagatgatgttcgcaatatgaaggtgtcttgtgttggcagaggattgatgggctatcttggaaataagggttcaatttcaattagcatgtccttgcaccaaacaagcttctgcttcatctgtagtcatctaacctctgggcagaaggacggagatgaacttcgaagaaactctgatgtcttggagatccttaggaagacaaggtttcccagggttaatggaatgggagatgaaagctctcctcagactatactagagcatgatcggatcatttggctcggtgatttgaattatcgcattgccctttcttaccgctatgcaaaagctcttgttgagatgcgcaactggagggcattgttagagaaggaccagctgaggatagagcagagacgaggacgtgtctttgagggatggagtgaagggaagatatatttccctccgacatacaagtatttgaacaattcagataggtatgccggtgaagataggcacaacaaggagaagcgaagaactccagcatggtgtgatcgtatattatggcatggaagaggcctccttcaattgtcctatgttcgtggggagtcgaggttctcagatcacaggccagtttacagcgtatttctggcagaggtcgagtccattaaccgtaaccgaatcaagaaaagcatgagttgttccagttccaggattgaggaatcttttcgaatacaagctgcgagtgacattcaatttttttccgggattccaaccccattgatctccttgatcagtcagagatggtcacggctcggttgcaaaggaaattctgccatgatggtgataaagacagtttattgcccacagtccaaaactaggtcacaattggcaaatttggaagcttctggcacaatggttgtggctggtcttggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052866 GO:0071704 GO:0106019

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

605

Amino Acids

68.9

Weight (kDa)

9.31

Isoelectric Point (pI)

55.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63240 AT3G63240
fragaria_vesca	FvH4_2g23170
malus_domestica	MD03G1261100.v1.1 MD11G1281400.v1.1
prunus_persica	Prupe.8G236900_v2.0.a1
pyrus_communis	pycom03g20850 pycom11g24940
rosa_chinensis	RchiOBHm_Chr6g0290421
rosa_laevigata	RLG00000012220
rosa_multiflora	Rmu_sc0002890.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177080
rosa_rugosa	Rorug06G0212600
rosa_samantha	Rh6AG322600 Rh6BG330100 Rh6CG336100
rosa_wichuraiana	Rw6G027880 Rw6G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	440
Acc16I	TGCGCA	1 cut(s)	1247
AciI	CCGC	3 cut(s)	574, 598, 1219
AclWI	GGATC	5 cut(s)	500, 547, 802, 1087, 1181
AcsI	RAATTY	2 cut(s)	1708, 1774
AfaI	GTAC	3 cut(s)	240, 656, 842
AfiI	CCNNNNNNNGG	3 cut(s)	441, 1590, 1758
AflIII	ACRYGT	2 cut(s)	621, 1303
AjiI	CACGTC	1 cut(s)	1304
AjnI	CCWGG	4 cut(s)	463, 745, 1115, 1589
AloI	GAACNNNNNNTCC	2 cut(s)	1478, 1510
Alw26I	GTCTC	1 cut(s)	1288
AlwI	GGATC	5 cut(s)	500, 547, 802, 1087, 1181
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	4 cut(s)	14, 555, 1456, 1508
ApeKI	GCWGC	2 cut(s)	600, 1619
ApoI	RAATTY	2 cut(s)	1708, 1774
Asp700I	GAANNNNTTC	2 cut(s)	369, 1605
AspLEI	GCGC	1 cut(s)	1248
AspS9I	GGNCC	4 cut(s)	15, 579, 743, 1273
AsuC2I	CCSGG	2 cut(s)	416, 1645
AsuHPI	GGTGA	8 cut(s)	110, 747, 761, 768, 904, 1199, 1397, 1735
AsuII	TTCGAA	2 cut(s)	1069, 1609
AvaII	GGWCC	3 cut(s)	579, 743, 1273
AxyI	CCTNAGG	1 cut(s)	1097
BbsI	GAAGAC	2 cut(s)	452, 1109
BbvCI	CCTCAGC	2 cut(s)	60, 1280
BbvI	GCAGC	2 cut(s)	612, 1606
BccI	CCATC	5 cut(s)	711, 949, 1311, 1677, 1714
BceAI	ACGGC	1 cut(s)	1706
BciT130I	CCWGG	4 cut(s)	465, 747, 1117, 1591
BclI	TGATCA	1 cut(s)	1671
BcnI	CCSGG	2 cut(s)	416, 1645
BcoDI	GTCTC	1 cut(s)	1288
BfaI	CTAG	4 cut(s)	308, 353, 1160, 1758
BfmI	CTRYAG	2 cut(s)	247, 1027
BglI	GCCNNNNNGGC	1 cut(s)	465
BisI	GCNGC	3 cut(s)	598, 601, 1620
BlsI	GCNGC	3 cut(s)	599, 602, 1621
Bme1390I	CCNGG	6 cut(s)	416, 465, 747, 1117, 1591, 1645
Bme18I	GGWCC	3 cut(s)	579, 743, 1273
BmgBI	CACGTC	1 cut(s)	1304
BmgT120I	GGNCC	4 cut(s)	15, 579, 743, 1273
BmiI	GGNNCC	1 cut(s)	724
BmrFI	CCNGG	6 cut(s)	416, 465, 747, 1117, 1591, 1645
BmsI	GCATC	1 cut(s)	1233
BoxI	GACNNNNGTC	1 cut(s)	26
BpiI	GAAGAC	2 cut(s)	452, 1109
BpmI	CTGGAG	2 cut(s)	1273, 1404
Bpu10I	CCTNAGC	2 cut(s)	60, 1280
Bpu14I	TTCGAA	2 cut(s)	1069, 1609
BpuEI	CTTGAG	2 cut(s)	613, 820
BpuMI	CCSGG	2 cut(s)	416, 1645
BsaJI	CCNNGG	3 cut(s)	414, 1115, 1116
BsaXI	ACNNNNNCTCC	4 cut(s)	316, 346, 1478, 1508
Bsc4I	CCNNNNNNNGG	3 cut(s)	441, 1590, 1758
Bse118I	RCCGGY	2 cut(s)	576, 1382
Bse1I	ACTGG	5 cut(s)	30, 497, 1256, 1511, 1584
Bse21I	CCTNAGG	1 cut(s)	1097
Bse3DI	GCAATG	2 cut(s)	394, 1203
BseBI	CCWGG	4 cut(s)	465, 747, 1117, 1591
BseDI	CCNNGG	3 cut(s)	414, 1115, 1116
BseGI	GGATG	1 cut(s)	1322
BseLI	CCNNNNNNNGG	3 cut(s)	441, 1590, 1758
BseMI	GCAATG	2 cut(s)	394, 1203
BseMII	CTCAG	5 cut(s)	51, 919, 1163, 1271, 1512
BseNI	ACTGG	5 cut(s)	30, 497, 1256, 1511, 1584
BseRI	GAGGAG	4 cut(s)	279, 321, 550, 1137
BseXI	GCAGC	2 cut(s)	612, 1606
BseYI	CCCAGC	1 cut(s)	639
BshFI	GGCC	4 cut(s)	16, 557, 1458, 1510
BsiSI	CCGG	5 cut(s)	196, 416, 577, 1383, 1644
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	3 cut(s)	441, 1590, 1758
BsmAI	GTCTC	1 cut(s)	1288
BsmBI	CGTCTC	1 cut(s)	1288
BsmFI	GGGAC	1 cut(s)	412
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	4 cut(s)	16, 557, 1458, 1510
Bsp119I	TTCGAA	2 cut(s)	1069, 1609
BspACI	CCGC	3 cut(s)	574, 598, 1219
BspANI	GGCC	4 cut(s)	16, 557, 1458, 1510
BspCNI	CTCAG	5 cut(s)	52, 918, 1162, 1272, 1511
BspLI	GGNNCC	1 cut(s)	724
BspPI	GGATC	5 cut(s)	500, 547, 802, 1087, 1181
BspT104I	TTCGAA	2 cut(s)	1069, 1609
BsrDI	GCAATG	2 cut(s)	394, 1203
BsrFI	RCCGGY	2 cut(s)	576, 1382
BsrI	ACTGG	5 cut(s)	30, 497, 1256, 1511, 1584
BssAI	RCCGGY	2 cut(s)	576, 1382
BssECI	CCNNGG	3 cut(s)	414, 1115, 1116
Bst2UI	CCWGG	4 cut(s)	465, 747, 1117, 1591
Bst4CI	ACNGT	7 cut(s)	654, 659, 771, 886, 1553, 1735, 1749
Bst6I	CTCTTC	2 cut(s)	99, 1447
BstBI	TTCGAA	2 cut(s)	1069, 1609
BstC8I	GCNNGC	4 cut(s)	139, 385, 856, 860
BstDEI	CTNAG	6 cut(s)	60, 905, 1097, 1149, 1280, 1498
BstF5I	GGATG	1 cut(s)	1322
BstHHI	GCGC	1 cut(s)	1248
BstMAI	GTCTC	1 cut(s)	1288
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 465
BstNI	CCWGG	4 cut(s)	465, 747, 1117, 1591
BstNSI	RCATGY	3 cut(s)	141, 625, 997
BstPAI	GACNNNNGTC	1 cut(s)	26
BstSCI	CCNGG	6 cut(s)	414, 463, 745, 1115, 1589, 1643
BstSFI	CTRYAG	2 cut(s)	247, 1027
BstV1I	GCAGC	2 cut(s)	612, 1606
BstV2I	GAAGAC	2 cut(s)	452, 1109
BstX2I	RGATCY	1 cut(s)	1092
BstXI	CCANNNNNNTGG	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	1092
Bsu36I	CCTNAGG	1 cut(s)	1097
BsuRI	GGCC	4 cut(s)	16, 557, 1458, 1510
BtrI	CACGTC	1 cut(s)	1304
BtsCI	GGATG	1 cut(s)	1322
BtsIMutI	CAGTG	2 cut(s)	23, 664
Cac8I	GCNNGC	4 cut(s)	139, 385, 856, 860
CaiI	CAGNNNCTG	1 cut(s)	503
CfoI	GCGC	1 cut(s)	1248
Cfr10I	RCCGGY	2 cut(s)	576, 1382
Cfr13I	GGNCC	4 cut(s)	15, 579, 743, 1273
CsiI	ACCWGGT	1 cut(s)	745
Csp6I	GTAC	3 cut(s)	239, 655, 841
CspCI	CAANNNNNGTGG	2 cut(s)	1782, 1817
CviQI	GTAC	3 cut(s)	239, 655, 841
DdeI	CTNAG	6 cut(s)	60, 905, 1097, 1149, 1280, 1498
Eam1104I	CTCTTC	2 cut(s)	99, 1447
EarI	CTCTTC	2 cut(s)	99, 1447
Eco147I	AGGCCT	2 cut(s)	557, 1458
Eco47I	GGWCC	3 cut(s)	579, 743, 1273
Eco81I	CCTNAGG	1 cut(s)	1097
EcoRII	CCWGG	4 cut(s)	463, 745, 1115, 1589
Esp3I	CGTCTC	1 cut(s)	1288
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FaqI	GGGAC	1 cut(s)	412
FbaI	TGATCA	1 cut(s)	1671
Fnu4HI	GCNGC	3 cut(s)	598, 601, 1620
FokI	GGATG	1 cut(s)	1329
Fsp4HI	GCNGC	3 cut(s)	598, 601, 1620
FspBI	CTAG	4 cut(s)	308, 353, 1160, 1758
FspI	TGCGCA	1 cut(s)	1247
GlaI	GCGC	1 cut(s)	1247
GluI	GCNGC	3 cut(s)	598, 601, 1620
GsaI	CCCAGC	1 cut(s)	643
GsuI	CTGGAG	2 cut(s)	1273, 1404
HaeIII	GGCC	4 cut(s)	16, 557, 1458, 1510
HapII	CCGG	5 cut(s)	196, 416, 577, 1383, 1644
HhaI	GCGC	1 cut(s)	1248
Hin6I	GCGC	1 cut(s)	1246
HinP1I	GCGC	1 cut(s)	1246
HindIII	AAGCTT	3 cut(s)	5, 1012, 1782
HinfI	GANTC	9 cut(s)	304, 448, 524, 752, 1487, 1541, 1560, 1601, 1648
HpaII	CCGG	5 cut(s)	196, 416, 577, 1383, 1644
HphI	GGTGA	8 cut(s)	110, 747, 761, 768, 904, 1199, 1397, 1735
Hpy166II	GTNNAC	1 cut(s)	1516
Hpy188III	TCNNGA	7 cut(s)	31, 49, 148, 308, 362, 503, 1564
Hpy8I	GTNNAC	1 cut(s)	1516
Hpy99I	CGWCG	1 cut(s)	654
HpyAV	CCTTC	9 cut(s)	470, 501, 547, 574, 922, 1045, 1264, 1319, 1472
HpyCH4III	ACNGT	7 cut(s)	654, 659, 771, 886, 1553, 1735, 1749
HpyCH4IV	ACGT	3 cut(s)	219, 237, 1303
HpyCH4V	TGCA	4 cut(s)	141, 1003, 1226, 1701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 465
HpyF3I	CTNAG	6 cut(s)	60, 905, 1097, 1149, 1280, 1498
HpySE526I	ACGT	3 cut(s)	219, 237, 1303
HspAI	GCGC	1 cut(s)	1246
Ksp22I	TGATCA	1 cut(s)	1671
Lsp1109I	GCAGC	2 cut(s)	612, 1606
LweI	GCATC	1 cut(s)	1233
MabI	ACCWGGT	1 cut(s)	745
MaeI	CTAG	4 cut(s)	308, 353, 1160, 1758
MaeII	ACGT	3 cut(s)	219, 237, 1303
MaeIII	GTNAC	8 cut(s)	229, 695, 753, 763, 1553, 1625, 1686, 1761
MfeI	CAATTG	3 cut(s)	510, 1466, 1766
MflI	RGATCY	1 cut(s)	1092
MlyI	GAGTC	4 cut(s)	442, 761, 1496, 1550
MmeI	TCCRAC	3 cut(s)	501, 1370, 1676
MroXI	GAANNNNTTC	2 cut(s)	369, 1605
MseI	TTAA	4 cut(s)	170, 881, 1122, 1548
MslI	CAYNNNNRTG	3 cut(s)	608, 626, 1721
MspA1I	CMGCKG	1 cut(s)	1279
MspI	CCGG	5 cut(s)	196, 416, 577, 1383, 1644
MspR9I	CCNGG	6 cut(s)	416, 465, 747, 1117, 1591, 1645
MunI	CAATTG	3 cut(s)	510, 1466, 1766
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	4 cut(s)	465, 747, 1117, 1591
MwoI	GCNNNNNNNGC	2 cut(s)	13, 465
NciI	CCSGG	2 cut(s)	416, 1645
NlaIV	GGNNCC	1 cut(s)	724
NmuCI	GTSAC	6 cut(s)	695, 753, 763, 1625, 1686, 1761
NsbI	TGCGCA	1 cut(s)	1247
NspI	RCATGY	3 cut(s)	141, 625, 997
NspV	TTCGAA	2 cut(s)	1069, 1609
PaeI	GCATGC	1 cut(s)	141
PasI	CCCWGGG	1 cut(s)	1116
PceI	AGGCCT	2 cut(s)	557, 1458
PciI	ACATGT	1 cut(s)	621
PctI	GAATGC	1 cut(s)	385
PdmI	GAANNNNTTC	2 cut(s)	369, 1605
PfeI	GAWTC	5 cut(s)	304, 524, 1560, 1601, 1648
PfoI	TCCNGGA	2 cut(s)	1589, 1643
PkrI	GCNGC	3 cut(s)	599, 602, 1621
PleI	GAGTC	4 cut(s)	442, 760, 1495, 1549
PpsI	GAGTC	4 cut(s)	442, 760, 1495, 1549
PscI	ACATGT	1 cut(s)	621
PshAI	GACNNNNGTC	1 cut(s)	26
PsiI	TTATAA	1 cut(s)	440
Psp6I	CCWGG	4 cut(s)	463, 745, 1115, 1589
PspFI	CCCAGC	1 cut(s)	639
PspGI	CCWGG	4 cut(s)	463, 745, 1115, 1589
PspN4I	GGNNCC	1 cut(s)	724
PspPI	GGNCC	4 cut(s)	15, 579, 743, 1273
PsrI	GAACNNNNNNTAC	2 cut(s)	824, 856
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	1092
PvuII	CAGCTG	1 cut(s)	1279
RsaI	GTAC	3 cut(s)	240, 656, 842
RsaNI	GTAC	3 cut(s)	239, 655, 841
RseI	CAYNNNNRTG	3 cut(s)	608, 626, 1721
SaqAI	TTAA	4 cut(s)	170, 881, 1122, 1548
SatI	GCNGC	3 cut(s)	598, 601, 1620
Sau96I	GGNCC	4 cut(s)	15, 579, 743, 1273
SchI	GAGTC	4 cut(s)	442, 761, 1496, 1550
ScrFI	CCNGG	6 cut(s)	416, 465, 747, 1117, 1591, 1645
SexAI	ACCWGGT	1 cut(s)	745
SfaNI	GCATC	1 cut(s)	1233
SfcI	CTRYAG	2 cut(s)	247, 1027
SfuI	TTCGAA	2 cut(s)	1069, 1609
SinI	GGWCC	3 cut(s)	579, 743, 1273
SmiMI	CAYNNNNRTG	3 cut(s)	608, 626, 1721
SmlI	CTYRAG	2 cut(s)	592, 835
SmoI	CTYRAG	2 cut(s)	592, 835
SphI	GCATGC	1 cut(s)	141
SseBI	AGGCCT	2 cut(s)	557, 1458
SsiI	CCGC	3 cut(s)	574, 598, 1219
SspMI	CTAG	4 cut(s)	308, 353, 1160, 1758
StuI	AGGCCT	2 cut(s)	557, 1458
StyD4I	CCNGG	6 cut(s)	414, 463, 745, 1115, 1589, 1643
TaaI	ACNGT	7 cut(s)	654, 659, 771, 886, 1553, 1735, 1749
TaiI	ACGT	3 cut(s)	222, 240, 1306
TaqI	TCGA	6 cut(s)	649, 670, 1069, 1490, 1539, 1609
TaqII	GACCGA	1 cut(s)	706
TauI	GCSGC	1 cut(s)	600
TfiI	GAWTC	5 cut(s)	304, 524, 1560, 1601, 1648
Tru1I	TTAA	4 cut(s)	170, 881, 1122, 1548
Tru9I	TTAA	4 cut(s)	170, 881, 1122, 1548
TscAI	CASTG	2 cut(s)	30, 664
TseFI	GTSAC	6 cut(s)	695, 753, 763, 1625, 1686, 1761
TseI	GCWGC	2 cut(s)	600, 1619
Tsp45I	GTSAC	6 cut(s)	695, 753, 763, 1625, 1686, 1761
TspDTI	ATGAA	7 cut(s)	17, 117, 311, 941, 1012, 1077, 1152
TspGWI	ACGGA	1 cut(s)	1071
TspRI	CASTG	2 cut(s)	30, 664
VpaK11BI	GGWCC	3 cut(s)	579, 743, 1273
XapI	RAATTY	2 cut(s)	1708, 1774
XbaI	TCTAGA	1 cut(s)	307
XceI	RCATGY	3 cut(s)	141, 625, 997
XcmI	CCANNNNNNNNNTGG	1 cut(s)	862
XmnI	GAANNNNTTC	2 cut(s)	369, 1605
XspI	CTAG	4 cut(s)	308, 353, 1160, 1758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.