RLG00000012220

Type I inositol 1,4,5-trisphosphate 5-phosphatase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
16363218 .. 16367344
4127 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012220

Sequence Viewer

Length: 1884 bp
ATGATAGATGGGAATTCAAAGAAAAGCAAGCTTTCATGGCCCAAGACACTGGTCAAGAAGTGGCTCAACATCAAGAGCAAAGCTGAGGATTTTCATGCAGATGATGTTGTTTATGGAGGTGGTGATGAAGAGTGGAGGAACAACTATTCAGAGAGGGAAGCATGCACAATCAAGAAAAGCAAAACAGAAAGGTTAAGCAAGAGGCACTCTGATAAAGTCCGGCGAGGTAAGATTGACATGGACGCATCACAGGTGACAGACGTACAAAATTATAGGATTTTTGTAGCTACATGGAATGTGGCTGGGAAATCTCCTCCGAGTTGTTTGAATCTAGAAGATTGGCTTCATACCTCTCCTCCTGCTGACATTTATGTTCTAGGGTTTCAAGAAATAGTTCCTTTGAATGCTGGCAATGTGTTGGGGACAGAGGACAATGCCCCAGCTAAAAAATGGGTAGCCCTTATAAGGAAGACTCTAAATAGTCTTCCCGGCGCAAGTGGTGGTTGCCATACCCCTTCGCCAGTTCCTGATCCAATTGTGGAGTTGGATTCAGACTTTGAGGGATCAACAAGGCAGAAGGCCTCCTCCTTCTTCCACCGCCGGTCCTTTCAATCCTTGAGCCGCAGCATGAGAATGGAGAATGACATGTCAATGCCACAACCCCAGCTTGATCGACGGTACAGTGTTTGTGATCGAGTTATTTTTGGGAATAGACCAAGTGACTATGACCCCAATGTAAGATGGGGTTCCTCTGATGATGATAATGGACCTGGTGAGTCACCTGTTGTCACACAGTATTCACCAATGTCCAATAGTGGATCATTTTCAATAGAGGATAGAGAAAGACAGCAAGGGAACTCAAGGTACTGCTTGGTTGCCAGCAAGCAAATGGTTGGGATATTTTTAACGGTGTGGGTGAGAAGTGATCTCAGAGATGATGTTCGCAATATGAAGGTGTCTTGTGTTGGCAGAGGATTGATGGGCTATCTTGGAAATAAGGGTTCAATTTCAATCAGCATGTCCTTGCACGAAACAAGCTTCTGCTTCATCTGTAGTCATCTAACCTCTGGGCAGAAGGACGGAGATGAACTTCGAAGAAACTCTGATGTCTTGGAGATCCTTAGGAAGACAAGGTTTCCCAGGGTTAATGGAATGGGAGATGAAAGCTCTCCTCAGACTATACTAGAGCATGATCGAATCATTTGGCTCGGTGATTTGAATTATCGCATTGCCCTTTCTTACCGCTATGCAAAAGCTCTTGTTGAGATGCGCAACTGGAGGGCATTGTTAGAGAAGGACCAGCTAAGGATAGAGCAGAGACGAGGACGTGTCTTTGAGGGATGGAGTGAAGGGAAGATATATTTCCCTCCGACATACAAGTATTTGAACAATTCAGATAGGTATGCCGGTGATGATAGGCACAACAAGGAGAAGCGAAGAACTCCAGCATGGTGTGATCGTATATTATGGCATGGAAGAGGCCTCCTTCAATTGTCCTATGTTCGTGGGGAGTCGAGGTTCTCAGATCACAGGCCAGTTTACAGCGTATTTCTGGCAGAGGTCGAGTCCATTAACCGTAACCGAATCAAGAAAAGCATGAGTTGTTCCAGTTCCAGGATTGAGGAATCTTTTCGAATACAAGCTGCGAGTGACATTCAATTTTTTTCCGGGATTCCAACCCCATTGATCTCCTTGATCAGTCAGAGATGGTCACGGCTCAGTTGCAAAGGAAATTCTACCATGATGGTGATAAAGACAGTTTATAGCCCACTGTCCAAATCTAGGTCACAATTGGCAAATTTGGAAGCTTCTGGCACAATGGTTGTGGCTGATCTTGGTAATGAGGATGAGCATGATGACCCATTTGGAGCCAAGACGGTTTGA

Protein Analysis

628

Amino Acids

71.29

Weight (kDa)

9.08

Isoelectric Point (pI)

54.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 97 - 161 2.6e-07 Endonuclease/Exonuclease/phosphatase family 2
Exo_endo_phos2 PF22669 282 - 515 3.5e-63 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012832)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63240 AT3G63240
fragaria_vesca FvH4_2g23170
malus_domestica MD03G1261100.v1.1 MD11G1281400.v1.1
prunus_persica Prupe.8G236900_v2.0.a1
pyrus_communis pycom03g20850 pycom11g24940
rosa_chinensis RchiOBHm_Chr6g0290421
rosa_laevigata RLG00000012220
rosa_multiflora Rmu_sc0002890.1_g000001
rosa_roxburghii Rroxscaffold_7G00177080
rosa_rugosa Rorug06G0212600
rosa_samantha Rh6AG322600 Rh6BG330100 Rh6CG336100
rosa_wichuraiana Rw6G027880 Rw6G027970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 464
Acc16I TGCGCA 1 cut(s) 1271
AciI CCGC 3 cut(s) 598, 622, 1243
AclWI GGATC 4 cut(s) 524, 571, 826, 1111
AcsI RAATTY 3 cut(s) 13, 1732, 1798
AfaI GTAC 3 cut(s) 264, 680, 866
AfiI CCNNNNNNNGG 3 cut(s) 465, 1614, 1782
AflIII ACRYGT 2 cut(s) 645, 1327
AjiI CACGTC 1 cut(s) 1328
AjnI CCWGG 3 cut(s) 769, 1139, 1613
AloI GAACNNNNNNTCC 2 cut(s) 1502, 1534
Alw26I GTCTC 1 cut(s) 1312
AlwI GGATC 4 cut(s) 524, 571, 826, 1111
AlwNI CAGNNNCTG 1 cut(s) 527
AoxI GGCC 4 cut(s) 38, 579, 1480, 1532
ApeKI GCWGC 2 cut(s) 624, 1643
ApoI RAATTY 3 cut(s) 13, 1732, 1798
Asp700I GAANNNNTTC 2 cut(s) 393, 1629
AspLEI GCGC 2 cut(s) 494, 1272
AspS9I GGNCC 4 cut(s) 39, 603, 767, 1297
AsuC2I CCSGG 2 cut(s) 489, 1669
AsuHPI GGTGA 9 cut(s) 134, 265, 771, 785, 792, 928, 1223, 1421, 1759
AsuII TTCGAA 2 cut(s) 1093, 1633
AvaII GGWCC 3 cut(s) 603, 767, 1297
AxyI CCTNAGG 1 cut(s) 1121
BbsI GAAGAC 3 cut(s) 476, 476, 1133
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 636, 1630
BccI CCATC 6 cut(s) 2, 735, 973, 1335, 1701, 1738
BceAI ACGGC 1 cut(s) 1730
BciT130I CCWGG 3 cut(s) 771, 1141, 1615
BclI TGATCA 1 cut(s) 1695
BcnI CCSGG 2 cut(s) 489, 1669
BcoDI GTCTC 1 cut(s) 1312
BfaI CTAG 4 cut(s) 332, 377, 1184, 1782
BfmI CTRYAG 1 cut(s) 1051
BisI GCNGC 3 cut(s) 622, 625, 1644
BlsI GCNGC 3 cut(s) 623, 626, 1645
Bme1390I CCNGG 5 cut(s) 489, 771, 1141, 1615, 1669
Bme18I GGWCC 3 cut(s) 603, 767, 1297
BmgBI CACGTC 1 cut(s) 1328
BmgT120I GGNCC 4 cut(s) 39, 603, 767, 1297
BmiI GGNNCC 2 cut(s) 748, 1870
BmrFI CCNGG 5 cut(s) 489, 771, 1141, 1615, 1669
BmsI GCATC 2 cut(s) 254, 1257
BoxI GACNNNNGTC 1 cut(s) 50
BpiI GAAGAC 3 cut(s) 476, 476, 1133
BpmI CTGGAG 2 cut(s) 1297, 1428
Bpu10I CCTNAGC 2 cut(s) 84, 1304
Bpu14I TTCGAA 2 cut(s) 1093, 1633
BpuEI CTTGAG 2 cut(s) 637, 844
BpuMI CCSGG 2 cut(s) 489, 1669
BsaJI CCNNGG 2 cut(s) 1139, 1140
BsaXI ACNNNNNCTCC 4 cut(s) 340, 370, 1502, 1532
Bsc4I CCNNNNNNNGG 3 cut(s) 465, 1614, 1782
Bse118I RCCGGY 2 cut(s) 600, 1406
Bse1I ACTGG 5 cut(s) 54, 521, 1280, 1535, 1608
Bse21I CCTNAGG 1 cut(s) 1121
Bse3DI GCAATG 2 cut(s) 418, 1227
BseBI CCWGG 3 cut(s) 771, 1141, 1615
BseDI CCNNGG 2 cut(s) 1139, 1140
BseGI GGATG 2 cut(s) 1346, 1852
BseLI CCNNNNNNNGG 3 cut(s) 465, 1614, 1782
BseMI GCAATG 2 cut(s) 418, 1227
BseMII CTCAG 5 cut(s) 75, 943, 1187, 1536, 1732
BseNI ACTGG 5 cut(s) 54, 521, 1280, 1535, 1608
BseRI GAGGAG 4 cut(s) 303, 345, 574, 1161
BseXI GCAGC 2 cut(s) 636, 1630
BseYI CCCAGC 3 cut(s) 302, 439, 663
BshFI GGCC 4 cut(s) 40, 581, 1482, 1534
BsiSI CCGG 5 cut(s) 220, 489, 601, 1407, 1668
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 3 cut(s) 465, 1614, 1782
BsmAI GTCTC 1 cut(s) 1312
BsmBI CGTCTC 1 cut(s) 1312
BsmFI GGGAC 1 cut(s) 436
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 4 cut(s) 40, 581, 1482, 1534
Bsp119I TTCGAA 2 cut(s) 1093, 1633
BspACI CCGC 3 cut(s) 598, 622, 1243
BspANI GGCC 4 cut(s) 40, 581, 1482, 1534
BspCNI CTCAG 5 cut(s) 76, 942, 1186, 1535, 1731
BspLI GGNNCC 2 cut(s) 748, 1870
BspPI GGATC 4 cut(s) 524, 571, 826, 1111
BspT104I TTCGAA 2 cut(s) 1093, 1633
BsrDI GCAATG 2 cut(s) 418, 1227
BsrFI RCCGGY 2 cut(s) 600, 1406
BsrI ACTGG 5 cut(s) 54, 521, 1280, 1535, 1608
BssAI RCCGGY 2 cut(s) 600, 1406
BssECI CCNNGG 2 cut(s) 1139, 1140
Bst2UI CCWGG 3 cut(s) 771, 1141, 1615
Bst4CI ACNGT 8 cut(s) 678, 683, 795, 910, 1577, 1759, 1773, 1879
Bst6I CTCTTC 2 cut(s) 123, 1471
BstBI TTCGAA 2 cut(s) 1093, 1633
BstC8I GCNNGC 5 cut(s) 29, 163, 409, 880, 884
BstDEI CTNAG 7 cut(s) 84, 929, 1121, 1173, 1304, 1522, 1718
BstF5I GGATG 2 cut(s) 1346, 1852
BstHHI GCGC 2 cut(s) 494, 1272
BstMAI GTCTC 1 cut(s) 1312
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 3 cut(s) 771, 1141, 1615
BstNSI RCATGY 3 cut(s) 165, 649, 1021
BstPAI GACNNNNGTC 1 cut(s) 50
BstSCI CCNGG 5 cut(s) 487, 769, 1139, 1613, 1667
BstSFI CTRYAG 1 cut(s) 1051
BstV1I GCAGC 2 cut(s) 636, 1630
BstV2I GAAGAC 3 cut(s) 476, 476, 1133
BstX2I RGATCY 1 cut(s) 1116
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 1 cut(s) 1116
Bsu36I CCTNAGG 1 cut(s) 1121
BsuRI GGCC 4 cut(s) 40, 581, 1482, 1534
BtrI CACGTC 1 cut(s) 1328
BtsCI GGATG 2 cut(s) 1346, 1852
BtsIMutI CAGTG 3 cut(s) 47, 688, 1769
Cac8I GCNNGC 5 cut(s) 29, 163, 409, 880, 884
CaiI CAGNNNCTG 1 cut(s) 527
CfoI GCGC 2 cut(s) 494, 1272
Cfr10I RCCGGY 2 cut(s) 600, 1406
Cfr13I GGNCC 4 cut(s) 39, 603, 767, 1297
CseI GACGC 1 cut(s) 251
CsiI ACCWGGT 1 cut(s) 769
Csp6I GTAC 3 cut(s) 263, 679, 865
CspCI CAANNNNNGTGG 2 cut(s) 1806, 1841
CviQI GTAC 3 cut(s) 263, 679, 865
DdeI CTNAG 7 cut(s) 84, 929, 1121, 1173, 1304, 1522, 1718
Eam1104I CTCTTC 2 cut(s) 123, 1471
EarI CTCTTC 2 cut(s) 123, 1471
Eco147I AGGCCT 2 cut(s) 581, 1482
Eco47I GGWCC 3 cut(s) 603, 767, 1297
Eco81I CCTNAGG 1 cut(s) 1121
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 3 cut(s) 769, 1139, 1613
Esp3I CGTCTC 1 cut(s) 1312
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FaqI GGGAC 1 cut(s) 436
FbaI TGATCA 1 cut(s) 1695
Fnu4HI GCNGC 3 cut(s) 622, 625, 1644
FokI GGATG 2 cut(s) 1353, 1859
Fsp4HI GCNGC 3 cut(s) 622, 625, 1644
FspBI CTAG 4 cut(s) 332, 377, 1184, 1782
FspI TGCGCA 1 cut(s) 1271
GlaI GCGC 2 cut(s) 493, 1271
GluI GCNGC 3 cut(s) 622, 625, 1644
GsaI CCCAGC 3 cut(s) 306, 443, 667
GsuI CTGGAG 2 cut(s) 1297, 1428
HaeIII GGCC 4 cut(s) 40, 581, 1482, 1534
HapII CCGG 5 cut(s) 220, 489, 601, 1407, 1668
HgaI GACGC 1 cut(s) 251
HhaI GCGC 2 cut(s) 494, 1272
Hin6I GCGC 2 cut(s) 492, 1270
HinP1I GCGC 2 cut(s) 492, 1270
HindIII AAGCTT 3 cut(s) 29, 1036, 1806
HpaII CCGG 5 cut(s) 220, 489, 601, 1407, 1668
HphI GGTGA 9 cut(s) 134, 265, 771, 785, 792, 928, 1223, 1421, 1759
Hpy166II GTNNAC 1 cut(s) 1540
Hpy188III TCNNGA 7 cut(s) 55, 73, 172, 332, 386, 527, 1588
Hpy8I GTNNAC 1 cut(s) 1540
Hpy99I CGWCG 1 cut(s) 678
HpyAV CCTTC 8 cut(s) 525, 571, 598, 946, 1069, 1288, 1343, 1496
HpyCH4III ACNGT 8 cut(s) 678, 683, 795, 910, 1577, 1759, 1773, 1879
HpyCH4IV ACGT 2 cut(s) 261, 1327
HpyCH4V TGCA 5 cut(s) 98, 165, 1027, 1250, 1725
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 7 cut(s) 84, 929, 1121, 1173, 1304, 1522, 1718
HpySE526I ACGT 2 cut(s) 261, 1327
HspAI GCGC 2 cut(s) 492, 1270
Ksp22I TGATCA 1 cut(s) 1695
LmnI GCTCC 1 cut(s) 1868
Lsp1109I GCAGC 2 cut(s) 636, 1630
LweI GCATC 2 cut(s) 254, 1257
MabI ACCWGGT 1 cut(s) 769
MaeI CTAG 4 cut(s) 332, 377, 1184, 1782
MaeII ACGT 2 cut(s) 261, 1327
MaeIII GTNAC 8 cut(s) 253, 719, 777, 787, 1577, 1649, 1710, 1785
MfeI CAATTG 3 cut(s) 534, 1490, 1790
MflI RGATCY 1 cut(s) 1116
MlyI GAGTC 4 cut(s) 466, 785, 1520, 1574
MmeI TCCRAC 3 cut(s) 525, 1394, 1700
MroXI GAANNNNTTC 2 cut(s) 393, 1629
MseI TTAA 4 cut(s) 194, 905, 1146, 1572
MslI CAYNNNNRTG 4 cut(s) 99, 632, 650, 1745
MspI CCGG 5 cut(s) 220, 489, 601, 1407, 1668
MspR9I CCNGG 5 cut(s) 489, 771, 1141, 1615, 1669
MunI CAATTG 3 cut(s) 534, 1490, 1790
Mva1269I GAATGC 1 cut(s) 409
MvaI CCWGG 3 cut(s) 771, 1141, 1615
MwoI GCNNNNNNNGC 1 cut(s) 37
NciI CCSGG 2 cut(s) 489, 1669
NlaIV GGNNCC 2 cut(s) 748, 1870
NmuCI GTSAC 7 cut(s) 253, 719, 777, 787, 1649, 1710, 1785
NsbI TGCGCA 1 cut(s) 1271
NspI RCATGY 3 cut(s) 165, 649, 1021
NspV TTCGAA 2 cut(s) 1093, 1633
PaeI GCATGC 1 cut(s) 165
PasI CCCWGGG 1 cut(s) 1140
PceI AGGCCT 2 cut(s) 581, 1482
PciI ACATGT 1 cut(s) 645
PctI GAATGC 1 cut(s) 409
PdmI GAANNNNTTC 2 cut(s) 393, 1629
PfeI GAWTC 6 cut(s) 328, 548, 1197, 1584, 1625, 1672
PfoI TCCNGGA 2 cut(s) 1613, 1667
PkrI GCNGC 3 cut(s) 623, 626, 1645
PleI GAGTC 4 cut(s) 466, 784, 1519, 1573
PpsI GAGTC 4 cut(s) 466, 784, 1519, 1573
PscI ACATGT 1 cut(s) 645
PshAI GACNNNNGTC 1 cut(s) 50
PsiI TTATAA 1 cut(s) 464
Psp6I CCWGG 3 cut(s) 769, 1139, 1613
PspFI CCCAGC 3 cut(s) 302, 439, 663
PspGI CCWGG 3 cut(s) 769, 1139, 1613
PspN4I GGNNCC 2 cut(s) 748, 1870
PspPI GGNCC 4 cut(s) 39, 603, 767, 1297
PsrI GAACNNNNNNTAC 2 cut(s) 848, 880
PstNI CAGNNNCTG 1 cut(s) 527
PsuI RGATCY 1 cut(s) 1116
RsaI GTAC 3 cut(s) 264, 680, 866
RsaNI GTAC 3 cut(s) 263, 679, 865
RseI CAYNNNNRTG 4 cut(s) 99, 632, 650, 1745
SaqAI TTAA 4 cut(s) 194, 905, 1146, 1572
SatI GCNGC 3 cut(s) 622, 625, 1644
Sau96I GGNCC 4 cut(s) 39, 603, 767, 1297
SchI GAGTC 4 cut(s) 466, 785, 1520, 1574
ScrFI CCNGG 5 cut(s) 489, 771, 1141, 1615, 1669
SexAI ACCWGGT 1 cut(s) 769
SfaNI GCATC 2 cut(s) 254, 1257
SfcI CTRYAG 1 cut(s) 1051
SfuI TTCGAA 2 cut(s) 1093, 1633
SinI GGWCC 3 cut(s) 603, 767, 1297
SmiMI CAYNNNNRTG 4 cut(s) 99, 632, 650, 1745
SmlI CTYRAG 2 cut(s) 616, 859
SmoI CTYRAG 2 cut(s) 616, 859
SphI GCATGC 1 cut(s) 165
SseBI AGGCCT 2 cut(s) 581, 1482
SsiI CCGC 3 cut(s) 598, 622, 1243
SspMI CTAG 4 cut(s) 332, 377, 1184, 1782
StuI AGGCCT 2 cut(s) 581, 1482
StyD4I CCNGG 5 cut(s) 487, 769, 1139, 1613, 1667
TaaI ACNGT 8 cut(s) 678, 683, 795, 910, 1577, 1759, 1773, 1879
TaiI ACGT 2 cut(s) 264, 1330
TaqI TCGA 7 cut(s) 673, 694, 1093, 1195, 1514, 1563, 1633
TauI GCSGC 1 cut(s) 624
TfiI GAWTC 6 cut(s) 328, 548, 1197, 1584, 1625, 1672
Tru1I TTAA 4 cut(s) 194, 905, 1146, 1572
Tru9I TTAA 4 cut(s) 194, 905, 1146, 1572
TscAI CASTG 3 cut(s) 54, 688, 1776
TseFI GTSAC 7 cut(s) 253, 719, 777, 787, 1649, 1710, 1785
TseI GCWGC 2 cut(s) 624, 1643
Tsp45I GTSAC 7 cut(s) 253, 719, 777, 787, 1649, 1710, 1785
TspDTI ATGAA 8 cut(s) 24, 83, 141, 335, 965, 1036, 1101, 1176
TspGWI ACGGA 1 cut(s) 1095
TspRI CASTG 3 cut(s) 54, 688, 1776
VpaK11BI GGWCC 3 cut(s) 603, 767, 1297
XapI RAATTY 3 cut(s) 13, 1732, 1798
XbaI TCTAGA 1 cut(s) 331
XceI RCATGY 3 cut(s) 165, 649, 1021
XcmI CCANNNNNNNNNTGG 2 cut(s) 447, 886
XmnI GAANNNNTTC 2 cut(s) 393, 1629
XspI CTAG 4 cut(s) 332, 377, 1184, 1782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.