Protein TIME FOR
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G63180 AT3G63180 |
| fragaria_vesca | FvH4_2g23490 FvH4_2g23490 |
| malus_domestica | MD03G1263800.v1.1 MD11G1284500.v1.1 |
| prunus_persica | Prupe.8G240200_v2.0.a1 Prupe.8G240200_v2.0.a1 Prupe.8G240200_v2.0.a1 |
| pyrus_communis | pycom03g21150 pycom11g25200 |
| rosa_chinensis | RchiOBHm_Chr6g0290961 |
| rosa_laevigata | RLG00000012160 |
| rosa_multiflora | Rmu_sc0001577.1_g000015 |
| rosa_roxburghii | Rroxscaffold_7G00176510 |
| rosa_rugosa | Rorug06G0216500 Rorug06G0216600 Rorug06G0216700 |
| rosa_samantha | Rh6AG326400 Rh6BG334000 Rh6CG340100 Rh6DG327300 |
| rosa_wichuraiana | Rw6G028380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 2839 |
| AccB1I | GGYRCC | 2 cut(s) | 1394, 2503 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1460 |
| AccI | GTMKAC | 1 cut(s) | 3083 |
| AccII | CGCG | 1 cut(s) | 66 |
| AciI | CCGC | 5 cut(s) | 188, 339, 608, 2168, 2513 |
| AclWI | GGATC | 2 cut(s) | 956, 1240 |
| AcoI | YGGCCR | 3 cut(s) | 1224, 1361, 3130 |
| AcsI | RAATTY | 5 cut(s) | 902, 1002, 1258, 2764, 3109 |
| AcuI | CTGAAG | 7 cut(s) | 171, 302, 651, 1469, 1767, 2374, 2783 |
| AfaI | GTAC | 3 cut(s) | 2407, 2886, 3212 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 402, 1391, 1460, 1987, 2473, 2687, 3152 |
| AflIII | ACRYGT | 3 cut(s) | 894, 2781, 3182 |
| AjnI | CCWGG | 2 cut(s) | 507, 1471 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1765, 1797 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3035, 3067 |
| Alw21I | GWGCWC | 5 cut(s) | 107, 149, 500, 570, 3182 |
| Alw26I | GTCTC | 4 cut(s) | 1076, 1275, 2082, 2239 |
| AlwI | GGATC | 2 cut(s) | 956, 1240 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 251, 325, 629, 1373, 2086 |
| Ama87I | CYCGRG | 1 cut(s) | 473 |
| AoxI | GGCC | 8 cut(s) | 26, 404, 1224, 1361, 1663, 1952, 2696, 3130 |
| ApoI | RAATTY | 5 cut(s) | 902, 1002, 1258, 2764, 3109 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 384, 416 |
| AseI | ATTAAT | 1 cut(s) | 1818 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1355, 2956 |
| AspS9I | GGNCC | 9 cut(s) | 392, 505, 750, 1663, 1706, 1844, 1952, 2498, 2706 |
| AsuC2I | CCSGG | 1 cut(s) | 713 |
| AsuHPI | GGTGA | 3 cut(s) | 602, 710, 2210 |
| AvaI | CYCGRG | 1 cut(s) | 473 |
| AvaII | GGWCC | 7 cut(s) | 392, 505, 750, 1706, 1844, 2498, 2706 |
| BaeGI | GKGCMC | 2 cut(s) | 231, 1221 |
| BalI | TGGCCA | 3 cut(s) | 1226, 1363, 3132 |
| BanI | GGYRCC | 2 cut(s) | 1394, 2503 |
| BanII | GRGCYC | 2 cut(s) | 500, 570 |
| BauI | CACGAG | 1 cut(s) | 140 |
| BbsI | GAAGAC | 3 cut(s) | 308, 2598, 3042 |
| Bbv12I | GWGCWC | 5 cut(s) | 107, 149, 500, 570, 3182 |
| BbvCI | CCTCAGC | 1 cut(s) | 465 |
| BccI | CCATC | 8 cut(s) | 190, 907, 991, 1072, 1616, 2065, 2573, 2717 |
| BceAI | ACGGC | 2 cut(s) | 1295, 2155 |
| BciT130I | CCWGG | 2 cut(s) | 509, 1473 |
| BciVI | GTATCC | 2 cut(s) | 1878, 2480 |
| BcnI | CCSGG | 1 cut(s) | 713 |
| BcoDI | GTCTC | 4 cut(s) | 1076, 1275, 2082, 2239 |
| BfaI | CTAG | 6 cut(s) | 1209, 1764, 2130, 3057, 3120, 3214 |
| BfmI | CTRYAG | 3 cut(s) | 1247, 1428, 1803 |
| BfuAI | ACCTGC | 1 cut(s) | 2839 |
| BfuI | GTATCC | 2 cut(s) | 1878, 2480 |
| BglII | AGATCT | 1 cut(s) | 2954 |
| BlpI | GCTNAGC | 1 cut(s) | 244 |
| BmcAI | AGTACT | 1 cut(s) | 3212 |
| Bme1390I | CCNGG | 3 cut(s) | 509, 713, 1473 |
| Bme18I | GGWCC | 7 cut(s) | 392, 505, 750, 1706, 1844, 2498, 2706 |
| BmeT110I | CYCGRG | 1 cut(s) | 473 |
| BmgT120I | GGNCC | 9 cut(s) | 392, 505, 750, 1663, 1706, 1844, 1952, 2498, 2706 |
| BmiI | GGNNCC | 6 cut(s) | 394, 751, 918, 1396, 2505, 2563 |
| BmrFI | CCNGG | 3 cut(s) | 509, 713, 1473 |
| BmrI | ACTGGG | 1 cut(s) | 873 |
| BmuI | ACTGGG | 1 cut(s) | 873 |
| BpiI | GAAGAC | 3 cut(s) | 308, 2598, 3042 |
| BpmI | CTGGAG | 2 cut(s) | 1211, 2574 |
| Bpu10I | CCTNAGC | 2 cut(s) | 465, 3007 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 244 |
| BpuEI | CTTGAG | 9 cut(s) | 41, 554, 896, 963, 2213, 2493, 2596, 3191, 3196 |
| BpuMI | CCSGG | 1 cut(s) | 713 |
| BsaAI | YACGTR | 1 cut(s) | 1391 |
| BsaBI | GATNNNNATC | 1 cut(s) | 458 |
| BsaJI | CCNNGG | 9 cut(s) | 501, 927, 1144, 1221, 1227, 1277, 1836, 2433, 2702 |
| BsaWI | WCCGGW | 1 cut(s) | 661 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 210, 240, 929, 959, 2722, 2752 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 402, 1391, 1460, 1987, 2473, 2687, 3152 |
| Bse118I | RCCGGY | 1 cut(s) | 2500 |
| Bse1I | ACTGG | 8 cut(s) | 868, 1194, 1378, 1934, 2557, 2692, 2788, 3046 |
| Bse3DI | GCAATG | 2 cut(s) | 52, 1308 |
| Bse8I | GATNNNNATC | 1 cut(s) | 458 |
| BseBI | CCWGG | 2 cut(s) | 509, 1473 |
| BseDI | CCNNGG | 9 cut(s) | 501, 927, 1144, 1221, 1227, 1277, 1836, 2433, 2702 |
| BseGI | GGATG | 5 cut(s) | 804, 1235, 2057, 2675, 3002 |
| BseJI | GATNNNNATC | 1 cut(s) | 458 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 402, 1391, 1460, 1987, 2473, 2687, 3152 |
| BseMI | GCAATG | 2 cut(s) | 52, 1308 |
| BseNI | ACTGG | 8 cut(s) | 868, 1194, 1378, 1934, 2557, 2692, 2788, 3046 |
| BseRI | GAGGAG | 9 cut(s) | 130, 141, 309, 909, 912, 1374, 1929, 2691, 2901 |
| BseSI | GKGCMC | 2 cut(s) | 231, 1221 |
| BseYI | CCCAGC | 2 cut(s) | 299, 2330 |
| BsgI | GTGCAG | 1 cut(s) | 2537 |
| Bsh1236I | CGCG | 1 cut(s) | 66 |
| BshFI | GGCC | 8 cut(s) | 28, 406, 1226, 1363, 1665, 1954, 2698, 3132 |
| BshNI | GGYRCC | 2 cut(s) | 1394, 2503 |
| BsiHKAI | GWGCWC | 5 cut(s) | 107, 149, 500, 570, 3182 |
| BsiHKCI | CYCGRG | 1 cut(s) | 473 |
| BsiSI | CCGG | 3 cut(s) | 662, 713, 2501 |
| BslFI | GGGAC | 3 cut(s) | 859, 1696, 2158 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 402, 1391, 1460, 1987, 2473, 2687, 3152 |
| BsmAI | GTCTC | 4 cut(s) | 1076, 1275, 2082, 2239 |
| BsmFI | GGGAC | 3 cut(s) | 859, 1696, 2158 |
| BsnI | GGCC | 8 cut(s) | 28, 406, 1226, 1363, 1665, 1954, 2698, 3132 |
| BsoBI | CYCGRG | 1 cut(s) | 473 |
| Bsp1286I | GDGCHC | 7 cut(s) | 107, 149, 231, 500, 570, 1221, 3182 |
| Bsp143I | GATC | 6 cut(s) | 130, 213, 459, 961, 1232, 2954 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 244 |
| Bsp19I | CCATGG | 3 cut(s) | 927, 1227, 2433 |
| BspACI | CCGC | 5 cut(s) | 188, 339, 608, 2168, 2513 |
| BspANI | GGCC | 8 cut(s) | 28, 406, 1226, 1363, 1665, 1954, 2698, 3132 |
| BspFNI | CGCG | 1 cut(s) | 66 |
| BspLI | GGNNCC | 6 cut(s) | 394, 751, 918, 1396, 2505, 2563 |
| BspMAI | CTGCAG | 2 cut(s) | 1432, 1807 |
| BspMI | ACCTGC | 1 cut(s) | 2839 |
| BspPI | GGATC | 2 cut(s) | 956, 1240 |
| BspT107I | GGYRCC | 2 cut(s) | 1394, 2503 |
| BsrDI | GCAATG | 2 cut(s) | 52, 1308 |
| BsrFI | RCCGGY | 1 cut(s) | 2500 |
| BsrI | ACTGG | 8 cut(s) | 868, 1194, 1378, 1934, 2557, 2692, 2788, 3046 |
| BssAI | RCCGGY | 1 cut(s) | 2500 |
| BssECI | CCNNGG | 9 cut(s) | 501, 927, 1144, 1221, 1227, 1277, 1836, 2433, 2702 |
| BssMI | GATC | 6 cut(s) | 130, 213, 459, 961, 1232, 2954 |
| BssSI | CACGAG | 1 cut(s) | 140 |
| BssT1I | CCWWGG | 7 cut(s) | 501, 927, 1144, 1221, 1227, 1836, 2433 |
| Bst2BI | CACGAG | 1 cut(s) | 140 |
| Bst2UI | CCWGG | 2 cut(s) | 509, 1473 |
| Bst6I | CTCTTC | 3 cut(s) | 303, 435, 786 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 2164, 2228, 2735 |
| BstBAI | YACGTR | 1 cut(s) | 1391 |
| BstDSI | CCRYGG | 4 cut(s) | 927, 1227, 1277, 2433 |
| BstF5I | GGATG | 5 cut(s) | 804, 1235, 2057, 2675, 3002 |
| BstFNI | CGCG | 1 cut(s) | 66 |
| BstKTI | GATC | 6 cut(s) | 133, 216, 462, 964, 1235, 2957 |
| BstMAI | GTCTC | 4 cut(s) | 1076, 1275, 2082, 2239 |
| BstMBI | GATC | 6 cut(s) | 130, 213, 459, 961, 1232, 2954 |
| BstNI | CCWGG | 2 cut(s) | 509, 1473 |
| BstNSI | RCATGY | 5 cut(s) | 898, 1721, 2377, 2785, 3186 |
| BstSCI | CCNGG | 3 cut(s) | 507, 711, 1471 |
| BstSFI | CTRYAG | 3 cut(s) | 1247, 1428, 1803 |
| BstSLI | GKGCMC | 2 cut(s) | 231, 1221 |
| BstUI | CGCG | 1 cut(s) | 66 |
| BstV2I | GAAGAC | 3 cut(s) | 308, 2598, 3042 |
| BstX2I | RGATCY | 1 cut(s) | 2954 |
| BstYI | RGATCY | 1 cut(s) | 2954 |
| BsuI | GTATCC | 2 cut(s) | 1878, 2480 |
| BsuRI | GGCC | 8 cut(s) | 28, 406, 1226, 1363, 1665, 1954, 2698, 3132 |
| BtgI | CCRYGG | 4 cut(s) | 927, 1227, 1277, 2433 |
| BtgZI | GCGATG | 1 cut(s) | 2695 |
| BtsCI | GGATG | 5 cut(s) | 804, 1235, 2057, 2675, 3002 |
| BtsI | GCAGTG | 3 cut(s) | 231, 1812, 2347 |
| BtsIMutI | CAGTG | 8 cut(s) | 147, 231, 1221, 1812, 1941, 2347, 2398, 2685 |
| BveI | ACCTGC | 1 cut(s) | 2839 |
| CaiI | CAGNNNCTG | 5 cut(s) | 251, 325, 629, 1373, 2086 |
| Cfr10I | RCCGGY | 1 cut(s) | 2500 |
| Cfr13I | GGNCC | 9 cut(s) | 392, 505, 750, 1663, 1706, 1844, 1952, 2498, 2706 |
| CseI | GACGC | 2 cut(s) | 151, 1665 |
| CsiI | ACCWGGT | 1 cut(s) | 1471 |
| Csp6I | GTAC | 3 cut(s) | 2406, 2885, 3211 |
| CviQI | GTAC | 3 cut(s) | 2406, 2885, 3211 |
| DpnI | GATC | 6 cut(s) | 132, 215, 461, 963, 1234, 2956 |
| DpnII | GATC | 6 cut(s) | 130, 213, 459, 961, 1232, 2954 |
| EaeI | YGGCCR | 3 cut(s) | 1224, 1361, 3130 |
| Eam1104I | CTCTTC | 3 cut(s) | 303, 435, 786 |
| EarI | CTCTTC | 3 cut(s) | 303, 435, 786 |
| Ecl136II | GAGCTC | 2 cut(s) | 498, 568 |
| Eco130I | CCWWGG | 7 cut(s) | 501, 927, 1144, 1221, 1227, 1836, 2433 |
| Eco24I | GRGCYC | 2 cut(s) | 500, 570 |
| Eco47I | GGWCC | 7 cut(s) | 392, 505, 750, 1706, 1844, 2498, 2706 |
| Eco53kI | GAGCTC | 2 cut(s) | 498, 568 |
| Eco57I | CTGAAG | 7 cut(s) | 171, 302, 651, 1469, 1767, 2374, 2783 |
| Eco88I | CYCGRG | 1 cut(s) | 473 |
| EcoICRI | GAGCTC | 2 cut(s) | 498, 568 |
| EcoRI | GAATTC | 1 cut(s) | 3109 |
| EcoRII | CCWGG | 2 cut(s) | 507, 1471 |
| EcoT14I | CCWWGG | 7 cut(s) | 501, 927, 1144, 1221, 1227, 1836, 2433 |
| EcoT22I | ATGCAT | 2 cut(s) | 1638, 1741 |
| EcoT38I | GRGCYC | 2 cut(s) | 500, 570 |
| ErhI | CCWWGG | 7 cut(s) | 501, 927, 1144, 1221, 1227, 1836, 2433 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 300, 332, 926, 958 |
| FaqI | GGGAC | 3 cut(s) | 859, 1696, 2158 |
| FauNDI | CATATG | 1 cut(s) | 2811 |
| FblI | GTMKAC | 1 cut(s) | 3083 |
| FokI | GGATG | 5 cut(s) | 791, 1222, 2044, 2662, 2989 |
| FriOI | GRGCYC | 2 cut(s) | 500, 570 |
| FspBI | CTAG | 6 cut(s) | 1209, 1764, 2130, 3057, 3120, 3214 |
| GsaI | CCCAGC | 2 cut(s) | 303, 2334 |
| GsuI | CTGGAG | 2 cut(s) | 1211, 2574 |
| HaeIII | GGCC | 8 cut(s) | 28, 406, 1226, 1363, 1665, 1954, 2698, 3132 |
| HapII | CCGG | 3 cut(s) | 662, 713, 2501 |
| HgaI | GACGC | 2 cut(s) | 151, 1665 |
| HindIII | AAGCTT | 4 cut(s) | 872, 1465, 2189, 2877 |
| HpaII | CCGG | 3 cut(s) | 662, 713, 2501 |
| HphI | GGTGA | 3 cut(s) | 602, 710, 2210 |
| Hpy166II | GTNNAC | 3 cut(s) | 718, 1810, 3084 |
| Hpy188III | TCNNGA | 8 cut(s) | 140, 252, 539, 614, 980, 1118, 2929, 3175 |
| Hpy8I | GTNNAC | 3 cut(s) | 718, 1810, 3084 |
| Hpy99I | CGWCG | 1 cut(s) | 167 |
| HpyCH4IV | ACGT | 1 cut(s) | 1390 |
| HpySE526I | ACGT | 1 cut(s) | 1390 |
| Kzo9I | GATC | 6 cut(s) | 130, 213, 459, 961, 1232, 2954 |
| MabI | ACCWGGT | 1 cut(s) | 1471 |
| MaeI | CTAG | 6 cut(s) | 1209, 1764, 2130, 3057, 3120, 3214 |
| MaeII | ACGT | 1 cut(s) | 1390 |
| MaeIII | GTNAC | 9 cut(s) | 60, 137, 653, 1124, 1339, 2148, 2314, 2683, 2814 |
| MalI | GATC | 6 cut(s) | 132, 215, 461, 963, 1234, 2956 |
| MboI | GATC | 6 cut(s) | 130, 213, 459, 961, 1232, 2954 |
| MflI | RGATCY | 1 cut(s) | 2954 |
| MhlI | GDGCHC | 7 cut(s) | 107, 149, 231, 500, 570, 1221, 3182 |
| MlsI | TGGCCA | 3 cut(s) | 1226, 1363, 3132 |
| MluNI | TGGCCA | 3 cut(s) | 1226, 1363, 3132 |
| MlyI | GAGTC | 4 cut(s) | 322, 767, 2084, 2965 |
| MmeI | TCCRAC | 2 cut(s) | 1426, 2589 |
| Mox20I | TGGCCA | 3 cut(s) | 1226, 1363, 3132 |
| Mph1103I | ATGCAT | 2 cut(s) | 1638, 1741 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1355, 2956 |
| MscI | TGGCCA | 3 cut(s) | 1226, 1363, 3132 |
| MseI | TTAA | 9 cut(s) | 602, 1011, 1101, 1580, 1818, 1947, 2103, 2585, 2664 |
| MslI | CAYNNNNRTG | 1 cut(s) | 270 |
| Msp20I | TGGCCA | 3 cut(s) | 1226, 1363, 3132 |
| MspA1I | CMGCKG | 1 cut(s) | 1760 |
| MspI | CCGG | 3 cut(s) | 662, 713, 2501 |
| MspR9I | CCNGG | 3 cut(s) | 509, 713, 1473 |
| MvaI | CCWGG | 2 cut(s) | 509, 1473 |
| MvnI | CGCG | 1 cut(s) | 66 |
| NciI | CCSGG | 1 cut(s) | 713 |
| NcoI | CCATGG | 3 cut(s) | 927, 1227, 2433 |
| NdeI | CATATG | 1 cut(s) | 2811 |
| NdeII | GATC | 6 cut(s) | 130, 213, 459, 961, 1232, 2954 |
| NlaIV | GGNNCC | 6 cut(s) | 394, 751, 918, 1396, 2505, 2563 |
| NmuCI | GTSAC | 5 cut(s) | 137, 653, 1124, 2148, 2683 |
| NsiI | ATGCAT | 2 cut(s) | 1638, 1741 |
| NspI | RCATGY | 5 cut(s) | 898, 1721, 2377, 2785, 3186 |
| PciI | ACATGT | 3 cut(s) | 894, 2781, 3182 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 171 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1355, 2956 |
| PfeI | GAWTC | 7 cut(s) | 400, 535, 1180, 1480, 2048, 2360, 2527 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1460 |
| PleI | GAGTC | 4 cut(s) | 321, 766, 2083, 2965 |
| PpsI | GAGTC | 4 cut(s) | 321, 766, 2083, 2965 |
| Ppu21I | YACGTR | 1 cut(s) | 1391 |
| PscI | ACATGT | 3 cut(s) | 894, 2781, 3182 |
| PshBI | ATTAAT | 1 cut(s) | 1818 |
| Psp124BI | GAGCTC | 2 cut(s) | 500, 570 |
| Psp6I | CCWGG | 2 cut(s) | 507, 1471 |
| PspFI | CCCAGC | 2 cut(s) | 299, 2330 |
| PspGI | CCWGG | 2 cut(s) | 507, 1471 |
| PspN4I | GGNNCC | 6 cut(s) | 394, 751, 918, 1396, 2505, 2563 |
| PspPI | GGNCC | 9 cut(s) | 392, 505, 750, 1663, 1706, 1844, 1952, 2498, 2706 |
| PstI | CTGCAG | 2 cut(s) | 1432, 1807 |
| PstNI | CAGNNNCTG | 5 cut(s) | 251, 325, 629, 1373, 2086 |
| PsuI | RGATCY | 1 cut(s) | 2954 |
| PvuII | CAGCTG | 1 cut(s) | 1760 |
| RsaI | GTAC | 3 cut(s) | 2407, 2886, 3212 |
| RsaNI | GTAC | 3 cut(s) | 2406, 2885, 3211 |
| RseI | CAYNNNNRTG | 1 cut(s) | 270 |
| SacI | GAGCTC | 2 cut(s) | 500, 570 |
| SaqAI | TTAA | 9 cut(s) | 602, 1011, 1101, 1580, 1818, 1947, 2103, 2585, 2664 |
| Sau3AI | GATC | 6 cut(s) | 130, 213, 459, 961, 1232, 2954 |
| Sau96I | GGNCC | 9 cut(s) | 392, 505, 750, 1663, 1706, 1844, 1952, 2498, 2706 |
| ScaI | AGTACT | 1 cut(s) | 3212 |
| SchI | GAGTC | 4 cut(s) | 322, 767, 2084, 2965 |
| ScrFI | CCNGG | 3 cut(s) | 509, 713, 1473 |
| SduI | GDGCHC | 7 cut(s) | 107, 149, 231, 500, 570, 1221, 3182 |
| SexAI | ACCWGGT | 1 cut(s) | 1471 |
| SfcI | CTRYAG | 3 cut(s) | 1247, 1428, 1803 |
| SinI | GGWCC | 7 cut(s) | 392, 505, 750, 1706, 1844, 2498, 2706 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 270 |
| SmlI | CTYRAG | 9 cut(s) | 56, 569, 875, 978, 2192, 2508, 2611, 3175, 3206 |
| SmoI | CTYRAG | 9 cut(s) | 56, 569, 875, 978, 2192, 2508, 2611, 3175, 3206 |
| SsiI | CCGC | 5 cut(s) | 188, 339, 608, 2168, 2513 |
| SspI | AATATT | 1 cut(s) | 2454 |
| SspMI | CTAG | 6 cut(s) | 1209, 1764, 2130, 3057, 3120, 3214 |
| SstI | GAGCTC | 2 cut(s) | 500, 570 |
| StyD4I | CCNGG | 3 cut(s) | 507, 711, 1471 |
| StyI | CCWWGG | 7 cut(s) | 501, 927, 1144, 1221, 1227, 1836, 2433 |
| TaiI | ACGT | 1 cut(s) | 1393 |
| TaqI | TCGA | 3 cut(s) | 438, 540, 869 |
| TaqII | GACCGA | 1 cut(s) | 2694 |
| TatI | WGTACW | 3 cut(s) | 2405, 2884, 3210 |
| TauI | GCSGC | 2 cut(s) | 341, 2170 |
| TfiI | GAWTC | 7 cut(s) | 400, 535, 1180, 1480, 2048, 2360, 2527 |
| Tru1I | TTAA | 9 cut(s) | 602, 1011, 1101, 1580, 1818, 1947, 2103, 2585, 2664 |
| Tru9I | TTAA | 9 cut(s) | 602, 1011, 1101, 1580, 1818, 1947, 2103, 2585, 2664 |
| TscAI | CASTG | 8 cut(s) | 154, 231, 1221, 1812, 1941, 2347, 2398, 2692 |
| TseFI | GTSAC | 5 cut(s) | 137, 653, 1124, 2148, 2683 |
| Tsp45I | GTSAC | 5 cut(s) | 137, 653, 1124, 2148, 2683 |
| TspRI | CASTG | 8 cut(s) | 154, 231, 1221, 1812, 1941, 2347, 2398, 2692 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1460 |
| VpaK11BI | GGWCC | 7 cut(s) | 392, 505, 750, 1706, 1844, 2498, 2706 |
| VspI | ATTAAT | 1 cut(s) | 1818 |
| XapI | RAATTY | 5 cut(s) | 902, 1002, 1258, 2764, 3109 |
| XceI | RCATGY | 5 cut(s) | 898, 1721, 2377, 2785, 3186 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 784 |
| XmiI | GTMKAC | 1 cut(s) | 3083 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1355, 2956 |
| XspI | CTAG | 6 cut(s) | 1209, 1764, 2130, 3057, 3120, 3214 |
| ZrmI | AGTACT | 1 cut(s) | 3212 |
| Zsp2I | ATGCAT | 2 cut(s) | 1638, 1741 |