Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008448

Physical Location & Seq

Genomic Coordinates Reverse (-)

53150264 .. 53154341

Gene Structure 4078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG340100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2742 bp

ATGAAATGTTATTCCTATGACTATAAAGCTATTAAAAATAGAGCAGAAACGGAGCATATGAAGGTGATGGAGAGAGTCGGGAGAGAAGCGAGAAGGTCAAGCATGGCAGCTGCTGCAACTGATGGACTTTCCGGCCGCAGTGAGATAGTGAGTAACAAGCGTAGGAGAGGAGAGGAGAGCCCGGGAAGCATGGATGAGGAAGATTGCAAGGTGGAGGTGGAAGACAATATGGTGCTTTCTCAGATGTCGTCATCATCATCGGCTCGCCGGAGAAACCATATGGTGGTGAAAGTCTCGAAGCAAGATCAGCCGTTGAAGTTGATCGGCGTTCAAGTTCCGAGGAAGGCTCGTTCAGCTTCAGGAAAACGGTCGCGTGAAAATAGTTCTTCAGGAAATGATGGGGTTGGGAAAGATCAGAATCTGCAGAAACTGAGCGAAGAACCGAGGAAGAAGATGAAACCAACTGGAGTCAAGAATCGACCTCCAAAATCGTTGAAATCGTCTTCTAGGACTGTAGAGGAGGAAATTGAGATTGAGATCGCCGAAGTTCTTTTCGGGTTGATGAAGCAATCTCAGAGCTCTAGGGATAGTGATAGTGTTGAAAGCTCTCCGTCAAACCGGGAAGATAAAGATAGATATGGCATTAGAAACGATTCTAAGACTTCAATCTCAGAACAGGAAAACAGCCATGTCTCTGATCCCGAGCTCAAACATGTCTCCAAGGAGAACAATTCTAATGCAGAAGCAGTTGAGAAGCCAAACATGGAAACTTCTTTGCCGAATTGGGAGCCAAAATCTGAAGATGTATCCGGGTCAGTAGAGTTGCAGAAGGAGGAAGCCAAGCCATTAGAGGTACCGGAGCTTAAAAGCAAGAGAGAGGACAAGTTTGAATTTGATCTCATGGCTCCTCCTCCTATGGAGGATTCAGCATCTGATAAACTTGTGGCGGAAGCTGTGCTTGAAACACAGCAAGACAAGAAGATAGAGGTAATCACGGAAAAGATAAATGAGAATCCAAACCGAGATAGTGGCACTAAATTACAACAGCAACCTAAGACTATCATTCCTAAACTGGAGAGAACTGACTGGCGAAGCGGTCTTTCAGCCACCACATTACAGCCCGGGAATTCATCTCTGTCTCAATCATGTGCTAAGACTAGATGTGCAACTCACCATTACATCGCTCGCAACATATACTTGCACCAGAAGGTTACAAATATGAACAATCTCTGGCCAGCAGCAGGTGGTTCTGCTCCTCTATGTGGCACCAAGCCAGACATAGTTGTTGGAAACCCAAGTCTAGGAAGCGTCTCAGGTCAGAGTGCAAAAGAATCAAAAGATCAGATTTCTGAGGCTGCATTCATAGAATCAACAAGAAGCAAGAAGCTTGTGGCTCAACAATCTCCATCACAGCCGGCCTCTGCTGGTAATCTAATGCATGGACCTACTTTCAAATTCTCTGTGGGACAAAATCAAGCATCAGTTGCAGCAACCAGTAATCCATCTGGTCCTTTGAAATATACAGAATTGACAAACAATGCATCACATTTTAGTCATTCAGCATTGTCAACAATAGCTGCAGCAAACCTCAGTAGCCCGAATATGACATTCCAAGAAGGTCCGTACTTAGCAATTAATGGGTATTCATTCCCCATTTCAACTCCTTCAGGAACAACACTGGCATTTCAAGGAGGAAACTCTACTCAGGCAGTGCCTTCATATAATGGTCCTTTCTATTCAAATCAAATGTTTCACCCTTCTCAGCTTCATCAGCAACAGTCTCACTCGCAGTTGCAGCATCAAGTCCGATCAATCCATCAAAAGAACACTGGAATTTCAACCGATTCATCGTTGTTTCACAGGCAACTAGAGTCTCAGCAACCGCAGAAAACACAATTTAGCAGTATGAAATCACAGCAGTCACAAAAACAGTATGTGCCACAATCCCTTCAGCCTTGCAAGCCTGAGGGTGACATCAATGGGGGGAATACTGCATCTTCTCAGACGCAACGTAGTGTTTATGGTTATGGGCAGAATTTTGCAGTGCCACTTCAACCCATGAACTTTACCATGATGCCCTATGTAACATTGAGTGGTGGTGGCAGTGGAAATCACATTGAGCAATCACAACAACAGGACTTAAAGGGTGTCTTTGGCATGTCATTTGCCTCCATCAGTGGAAATAAGGGTACAGGTAAACTCCTGAACTTTTCATCCATGTCACAAAGTCCAGCAATGTATCAAACCCTTCCAGCAACCCAAGGTGCACACCAAAACCATCATCATCATGTATCTGAAAGGAAGACTGGAAGCGTTTCCGACAATCCTGATCATGATGGGTCTAAAGCTGTTACTGGGAGGTCAACAGTGCAGACCCTTGTTTTTGATAATTCAGCAACAAATCTCAACTTCACAACCTCGAATTCTCATCAACAGCACCTCTACCAGTTTCAGCTTCAGCAGCAGCAACCTGCTATGGCAGCTAAGAGTAAAGCACCAAAGAGCGCTCCTGTCTTCTCACAAGCTCTAGTACAGTGCAATTCTTCTGTCCAATCTCCTAACAACTCCGGAAGATCATTGACTTCCCAAATTCCGATTACAACTTCAGCAGTCAATAGTTTTCTTCAACAACAAGGAAGAGCTTCACAAGGTCAGACTCTTCTATCTTTTGGAGGAAGCCCTAAATCGTCCTTAGCAGTACCACAAGGTCAAGTCACTAACCCTAGTTTGCTGACGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

913

Amino Acids

99.47

Weight (kDa)

9.07

Isoelectric Point (pI)

62.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63180 AT3G63180
fragaria_vesca	FvH4_2g23490 FvH4_2g23490
malus_domestica	MD03G1263800.v1.1 MD11G1284500.v1.1
prunus_persica	Prupe.8G240200_v2.0.a1 Prupe.8G240200_v2.0.a1 Prupe.8G240200_v2.0.a1
pyrus_communis	pycom03g21150 pycom11g25200
rosa_chinensis	RchiOBHm_Chr6g0290961
rosa_laevigata	RLG00000012160
rosa_multiflora	Rmu_sc0001577.1_g000015
rosa_roxburghii	Rroxscaffold_7G00176510
rosa_rugosa	Rorug06G0216500 Rorug06G0216600 Rorug06G0216700
rosa_samantha	Rh6AG326400 Rh6BG334000 Rh6CG340100 Rh6DG327300
rosa_wichuraiana	Rw6G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1232
Acc36I	ACCTGC	2 cut(s)	1232, 2479
Acc65I	GGTACC	1 cut(s)	853
AccB1I	GGYRCC	2 cut(s)	853, 1265
AccB7I	CCANNNNNTGG	1 cut(s)	283
AccII	CGCG	1 cut(s)	373
AccIII	TCCGGA	1 cut(s)	2567
AciI	CCGC	4 cut(s)	136, 947, 1095, 1883
AclWI	GGATC	1 cut(s)	692
AcoI	YGGCCR	2 cut(s)	133, 1232
AcsI	RAATTY	7 cut(s)	890, 1126, 1454, 1833, 2035, 2422, 2589
AcuI	CTGAAG	7 cut(s)	342, 372, 819, 1650, 1934, 2441, 2589
AfaI	GTAC	5 cut(s)	855, 1625, 2191, 2532, 2700
AfeI	AGCGCT	1 cut(s)	2506
AfiI	CCNNNNNNNGG	4 cut(s)	283, 1241, 1262, 1301
AflIII	ACRYGT	1 cut(s)	712
AloI	GAACNNNNNNTCC	4 cut(s)	334, 366, 2198, 2230
Alw21I	GWGCWC	3 cut(s)	581, 708, 2269
Alw26I	GTCTC	7 cut(s)	298, 697, 721, 1143, 1315, 1785, 1878
Alw44I	GTGCAC	1 cut(s)	2265
AlwI	GGATC	1 cut(s)	692
AlwNI	CAGNNNCTG	4 cut(s)	113, 421, 430, 932
Ama87I	CYCGRG	3 cut(s)	181, 701, 1121
Aor13HI	TCCGGA	1 cut(s)	2567
Aor51HI	AGCGCT	1 cut(s)	2506
AoxI	GGCC	3 cut(s)	133, 1232, 1416
ApaLI	GTGCAC	1 cut(s)	2265
ApoI	RAATTY	7 cut(s)	890, 1126, 1454, 1833, 2035, 2422, 2589
AseI	ATTAAT	1 cut(s)	1635
Asp700I	GAANNNNTTC	3 cut(s)	652, 2314, 2641
Asp718I	GGTACC	1 cut(s)	853
AspLEI	GCGC	1 cut(s)	2507
AspS9I	GGNCC	4 cut(s)	1442, 1508, 1619, 1727
AsuC2I	CCSGG	6 cut(s)	182, 183, 620, 811, 1122, 1123
AsuHPI	GGTGA	5 cut(s)	76, 298, 1163, 1745, 1982
AvaI	CYCGRG	3 cut(s)	181, 701, 1121
AvaII	GGWCC	4 cut(s)	1442, 1508, 1619, 1727
AxyI	CCTNAGG	1 cut(s)	1965
BaeGI	GKGCMC	1 cut(s)	2269
BalI	TGGCCA	1 cut(s)	1234
BanI	GGYRCC	2 cut(s)	853, 1265
BanII	GRGCYC	3 cut(s)	182, 581, 708
BbsI	GAAGAC	4 cut(s)	228, 495, 2309, 2506
Bbv12I	GWGCWC	3 cut(s)	581, 708, 2269
BccI	CCATC	9 cut(s)	61, 116, 392, 1414, 1510, 1824, 2180, 2286, 2330
BceAI	ACGGC	1 cut(s)	295
BciVI	GTATCC	1 cut(s)	817
BclI	TGATCA	1 cut(s)	2329
BcnI	CCSGG	6 cut(s)	182, 183, 620, 811, 1122, 1123
BcoDI	GTCTC	7 cut(s)	298, 697, 721, 1143, 1315, 1785, 1878
BfaI	CTAG	7 cut(s)	507, 582, 1158, 1301, 1868, 2528, 2724
BfmI	CTRYAG	3 cut(s)	422, 513, 1578
BfoI	RGCGCY	1 cut(s)	2508
BfuAI	ACCTGC	2 cut(s)	1232, 2479
BfuI	GTATCC	1 cut(s)	817
Bme1390I	CCNGG	6 cut(s)	182, 183, 620, 811, 1122, 1123
Bme18I	GGWCC	4 cut(s)	1442, 1508, 1619, 1727
BmeT110I	CYCGRG	3 cut(s)	181, 701, 1121
BmgT120I	GGNCC	4 cut(s)	1442, 1508, 1619, 1727
BmiI	GGNNCC	4 cut(s)	789, 855, 906, 1267
BmrFI	CCNGG	6 cut(s)	182, 183, 620, 811, 1122, 1123
BmrI	ACTGGG	1 cut(s)	2364
BmsI	GCATC	6 cut(s)	938, 1487, 1550, 1807, 2003, 2064
BmuI	ACTGGG	1 cut(s)	2364
BpiI	GAAGAC	4 cut(s)	228, 495, 2309, 2506
BplI	GAGNNNNNCTC	2 cut(s)	331, 363
BpmI	CTGGAG	2 cut(s)	486, 1094
Bpu10I	CCTNAGC	1 cut(s)	2692
BpuMI	CCSGG	6 cut(s)	182, 183, 620, 811, 1122, 1123
BsaBI	GATNNNNATC	2 cut(s)	417, 536
BsaJI	CCNNGG	6 cut(s)	181, 338, 443, 720, 1121, 2260
BsaWI	WCCGGW	2 cut(s)	856, 2567
Bsc4I	CCNNNNNNNGG	4 cut(s)	283, 1241, 1262, 1301
Bse118I	RCCGGY	1 cut(s)	1414
Bse1I	ACTGG	9 cut(s)	469, 1077, 1091, 1494, 1683, 1834, 2311, 2359, 2446
Bse21I	CCTNAGG	1 cut(s)	1965
Bse3DI	GCAATG	1 cut(s)	2241
Bse8I	GATNNNNATC	2 cut(s)	417, 536
BseAI	TCCGGA	1 cut(s)	2567
BseDI	CCNNGG	6 cut(s)	181, 338, 443, 720, 1121, 2260
BseGI	GGATG	2 cut(s)	199, 2213
BseJI	GATNNNNATC	2 cut(s)	417, 536
BseLI	CCNNNNNNNGG	4 cut(s)	283, 1241, 1262, 1301
BseMI	GCAATG	1 cut(s)	2241
BseNI	ACTGG	9 cut(s)	469, 1077, 1091, 1494, 1683, 1834, 2311, 2359, 2446
BseRI	GAGGAG	6 cut(s)	183, 188, 533, 897, 900, 1245
BseSI	GKGCMC	1 cut(s)	2269
BseX3I	CGGCCG	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	2390
Bsh1236I	CGCG	1 cut(s)	373
Bsh1285I	CGRYCG	2 cut(s)	136, 371
BshFI	GGCC	3 cut(s)	135, 1234, 1418
BshNI	GGYRCC	2 cut(s)	853, 1265
BsiEI	CGRYCG	2 cut(s)	136, 371
BsiHKAI	GWGCWC	3 cut(s)	581, 708, 2269
BsiHKCI	CYCGRG	3 cut(s)	181, 701, 1121
BsiSI	CCGG	9 cut(s)	132, 182, 268, 619, 810, 857, 1122, 1415, 2568
BslFI	GGGAC	1 cut(s)	1479
BslI	CCNNNNNNNGG	4 cut(s)	283, 1241, 1262, 1301
BsmAI	GTCTC	7 cut(s)	298, 697, 721, 1143, 1315, 1785, 1878
BsmBI	CGTCTC	1 cut(s)	1315
BsmFI	GGGAC	1 cut(s)	1479
BsmI	GAATGC	1 cut(s)	1358
BsnI	GGCC	3 cut(s)	135, 1234, 1418
BsoBI	CYCGRG	3 cut(s)	181, 701, 1121
Bsp1286I	GDGCHC	4 cut(s)	182, 581, 708, 2269
Bsp13I	TCCGGA	1 cut(s)	2567
BspACI	CCGC	4 cut(s)	136, 947, 1095, 1883
BspANI	GGCC	3 cut(s)	135, 1234, 1418
BspEI	TCCGGA	1 cut(s)	2567
BspFNI	CGCG	1 cut(s)	373
BspHI	TCATGA	1 cut(s)	2332
BspLI	GGNNCC	4 cut(s)	789, 855, 906, 1267
BspMAI	CTGCAG	2 cut(s)	426, 1582
BspMI	ACCTGC	2 cut(s)	1232, 2479
BspPI	GGATC	1 cut(s)	692
BspQI	GCTCTTC	1 cut(s)	2632
BspT107I	GGYRCC	2 cut(s)	853, 1265
BsrDI	GCAATG	1 cut(s)	2241
BsrFI	RCCGGY	1 cut(s)	1414
BsrI	ACTGG	9 cut(s)	469, 1077, 1091, 1494, 1683, 1834, 2311, 2359, 2446
BssAI	RCCGGY	1 cut(s)	1414
BssECI	CCNNGG	6 cut(s)	181, 338, 443, 720, 1121, 2260
BssT1I	CCWWGG	2 cut(s)	720, 2260
Bst4CI	ACNGT	6 cut(s)	369, 514, 1779, 1932, 2368, 2535
Bst6I	CTCTTC	2 cut(s)	2632, 2664
BstAPI	GCANNNNNTGC	2 cut(s)	113, 1484
BstC8I	GCNNGC	5 cut(s)	265, 1186, 1236, 1416, 1961
BstF5I	GGATG	2 cut(s)	199, 2213
BstFNI	CGCG	1 cut(s)	373
BstH2I	RGCGCY	1 cut(s)	2508
BstHHI	GCGC	1 cut(s)	2507
BstMAI	GTCTC	7 cut(s)	298, 697, 721, 1143, 1315, 1785, 1878
BstMCI	CGRYCG	2 cut(s)	136, 371
BstNSI	RCATGY	2 cut(s)	716, 2161
BstSCI	CCNGG	6 cut(s)	180, 181, 618, 809, 1120, 1121
BstSFI	CTRYAG	3 cut(s)	422, 513, 1578
BstSLI	GKGCMC	1 cut(s)	2269
BstUI	CGCG	1 cut(s)	373
BstV2I	GAAGAC	4 cut(s)	228, 495, 2309, 2506
BstZI	CGGCCG	1 cut(s)	133
Bsu36I	CCTNAGG	1 cut(s)	1965
BsuI	GTATCC	1 cut(s)	817
BsuRI	GGCC	3 cut(s)	135, 1234, 1418
BtgZI	GCGATG	1 cut(s)	1165
BtsCI	GGATG	2 cut(s)	199, 2213
BtsI	GCAGTG	4 cut(s)	145, 1716, 2049, 2110
BtsIMutI	CAGTG	9 cut(s)	145, 1676, 1716, 1827, 2049, 2110, 2182, 2373, 2540
BveI	ACCTGC	2 cut(s)	1232, 2479
Cac8I	GCNNGC	5 cut(s)	265, 1186, 1236, 1416, 1961
CaiI	CAGNNNCTG	4 cut(s)	113, 421, 430, 932
CciI	TCATGA	1 cut(s)	2332
CfoI	GCGC	1 cut(s)	2507
Cfr10I	RCCGGY	1 cut(s)	1414
Cfr13I	GGNCC	4 cut(s)	1442, 1508, 1619, 1727
Cfr9I	CCCGGG	2 cut(s)	181, 1121
CseI	GACGC	2 cut(s)	1297, 2014
Csp6I	GTAC	5 cut(s)	854, 1624, 2190, 2531, 2699
CviQI	GTAC	5 cut(s)	854, 1624, 2190, 2531, 2699
EaeI	YGGCCR	2 cut(s)	133, 1232
EagI	CGGCCG	1 cut(s)	133
Eam1104I	CTCTTC	2 cut(s)	2632, 2664
EarI	CTCTTC	2 cut(s)	2632, 2664
EciI	GGCGGA	1 cut(s)	962
Ecl136II	GAGCTC	2 cut(s)	579, 706
EclXI	CGGCCG	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	720, 2260
Eco24I	GRGCYC	3 cut(s)	182, 581, 708
Eco47I	GGWCC	4 cut(s)	1442, 1508, 1619, 1727
Eco47III	AGCGCT	1 cut(s)	2506
Eco52I	CGGCCG	1 cut(s)	133
Eco53kI	GAGCTC	2 cut(s)	579, 706
Eco57I	CTGAAG	7 cut(s)	342, 372, 819, 1650, 1934, 2441, 2589
Eco81I	CCTNAGG	1 cut(s)	1965
Eco88I	CYCGRG	3 cut(s)	181, 701, 1121
EcoICRI	GAGCTC	2 cut(s)	579, 706
EcoRI	GAATTC	2 cut(s)	1126, 2422
EcoT14I	CCWWGG	2 cut(s)	720, 2260
EcoT22I	ATGCAT	2 cut(s)	1440, 1543
EcoT38I	GRGCYC	3 cut(s)	182, 581, 708
ErhI	CCWWGG	2 cut(s)	720, 2260
Esp3I	CGTCTC	1 cut(s)	1315
FalI	AAGNNNNNCTT	4 cut(s)	942, 974, 2135, 2167
FaqI	GGGAC	1 cut(s)	1479
FauNDI	CATATG	2 cut(s)	57, 279
FbaI	TGATCA	1 cut(s)	2329
FokI	GGATG	2 cut(s)	206, 2200
FriOI	GRGCYC	3 cut(s)	182, 581, 708
FspBI	CTAG	7 cut(s)	507, 582, 1158, 1301, 1868, 2528, 2724
GlaI	GCGC	1 cut(s)	2506
GsuI	CTGGAG	2 cut(s)	486, 1094
HaeII	RGCGCY	1 cut(s)	2508
HaeIII	GGCC	3 cut(s)	135, 1234, 1418
HapII	CCGG	9 cut(s)	132, 182, 268, 619, 810, 857, 1122, 1415, 2568
HgaI	GACGC	2 cut(s)	1297, 2014
HhaI	GCGC	1 cut(s)	2507
Hin6I	GCGC	1 cut(s)	2505
HinP1I	GCGC	1 cut(s)	2505
HincII	GTYRAC	2 cut(s)	1569, 2364
HindII	GTYRAC	2 cut(s)	1569, 2364
HindIII	AAGCTT	1 cut(s)	1385
HpaII	CCGG	9 cut(s)	132, 182, 268, 619, 810, 857, 1122, 1415, 2568
HphI	GGTGA	5 cut(s)	76, 298, 1163, 1745, 1982
Hpy166II	GTNNAC	4 cut(s)	1569, 2198, 2267, 2364
Hpy8I	GTNNAC	4 cut(s)	1569, 2198, 2267, 2364
HpyCH4III	ACNGT	6 cut(s)	369, 514, 1779, 1932, 2368, 2535
HpyCH4IV	ACGT	1 cut(s)	2011
HpySE526I	ACGT	1 cut(s)	2011
HspAI	GCGC	1 cut(s)	2505
Kpn2I	TCCGGA	1 cut(s)	2567
KpnI	GGTACC	1 cut(s)	857
KroI	GCCGGC	1 cut(s)	1414
KroNI	GCCGGC	1 cut(s)	1416
Ksp22I	TGATCA	1 cut(s)	2329
LguI	GCTCTTC	1 cut(s)	2632
LmnI	GCTCC	6 cut(s)	52, 787, 859, 910, 1258, 2512
LweI	GCATC	6 cut(s)	938, 1487, 1550, 1807, 2003, 2064
MaeI	CTAG	7 cut(s)	507, 582, 1158, 1301, 1868, 2528, 2724
MaeII	ACGT	1 cut(s)	2011
MaeIII	GTNAC	8 cut(s)	152, 1210, 1920, 1970, 2083, 2220, 2350, 2713
MhlI	GDGCHC	4 cut(s)	182, 581, 708, 2269
MlsI	TGGCCA	1 cut(s)	1234
MluNI	TGGCCA	1 cut(s)	1234
MlyI	GAGTC	4 cut(s)	84, 477, 1880, 2650
MmeI	TCCRAC	2 cut(s)	1267, 2343
Mox20I	TGGCCA	1 cut(s)	1234
Mph1103I	ATGCAT	2 cut(s)	1440, 1543
MroI	TCCGGA	1 cut(s)	2567
MroNI	GCCGGC	1 cut(s)	1414
MroXI	GAANNNNTTC	3 cut(s)	652, 2314, 2641
MscI	TGGCCA	1 cut(s)	1234
MseI	TTAA	4 cut(s)	33, 864, 1635, 2141
MslI	CAYNNNNRTG	1 cut(s)	2286
Msp20I	TGGCCA	1 cut(s)	1234
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	9 cut(s)	132, 182, 268, 619, 810, 857, 1122, 1415, 2568
MspR9I	CCNGG	6 cut(s)	182, 183, 620, 811, 1122, 1123
Mva1269I	GAATGC	1 cut(s)	1358
MvnI	CGCG	1 cut(s)	373
NaeI	GCCGGC	1 cut(s)	1416
NciI	CCSGG	6 cut(s)	182, 183, 620, 811, 1122, 1123
NdeI	CATATG	2 cut(s)	57, 279
NgoMIV	GCCGGC	1 cut(s)	1414
NlaIV	GGNNCC	4 cut(s)	789, 855, 906, 1267
NmuCI	GTSAC	4 cut(s)	1920, 1970, 2220, 2713
NsiI	ATGCAT	2 cut(s)	1440, 1543
NspI	RCATGY	2 cut(s)	716, 2161
PagI	TCATGA	1 cut(s)	2332
PaqCI	CACCTGC	1 cut(s)	1232
PciI	ACATGT	1 cut(s)	712
PciSI	GCTCTTC	1 cut(s)	2632
PcsI	WCGNNNNNNNCGW	1 cut(s)	497
PctI	GAATGC	1 cut(s)	1358
PdiI	GCCGGC	1 cut(s)	1416
PdmI	GAANNNNTTC	3 cut(s)	652, 2314, 2641
PfeI	GAWTC	8 cut(s)	418, 475, 653, 923, 1012, 1331, 1367, 1844
PflMI	CCANNNNNTGG	1 cut(s)	283
PleI	GAGTC	4 cut(s)	83, 476, 1879, 2650
PpsI	GAGTC	4 cut(s)	83, 476, 1879, 2650
PscI	ACATGT	1 cut(s)	712
PshBI	ATTAAT	1 cut(s)	1635
Psp124BI	GAGCTC	2 cut(s)	581, 708
PspN4I	GGNNCC	4 cut(s)	789, 855, 906, 1267
PspPI	GGNCC	4 cut(s)	1442, 1508, 1619, 1727
PstI	CTGCAG	2 cut(s)	426, 1582
PstNI	CAGNNNCTG	4 cut(s)	113, 421, 430, 932
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	5 cut(s)	855, 1625, 2191, 2532, 2700
RsaNI	GTAC	5 cut(s)	854, 1624, 2190, 2531, 2699
RseI	CAYNNNNRTG	1 cut(s)	2286
SacI	GAGCTC	2 cut(s)	581, 708
SapI	GCTCTTC	1 cut(s)	2632
SaqAI	TTAA	4 cut(s)	33, 864, 1635, 2141
Sau96I	GGNCC	4 cut(s)	1442, 1508, 1619, 1727
SchI	GAGTC	4 cut(s)	84, 477, 1880, 2650
ScrFI	CCNGG	6 cut(s)	182, 183, 620, 811, 1122, 1123
SduI	GDGCHC	4 cut(s)	182, 581, 708, 2269
SfaNI	GCATC	6 cut(s)	938, 1487, 1550, 1807, 2003, 2064
SfcI	CTRYAG	3 cut(s)	422, 513, 1578
SinI	GGWCC	4 cut(s)	1442, 1508, 1619, 1727
SmaI	CCCGGG	2 cut(s)	183, 1123
SmiMI	CAYNNNNRTG	1 cut(s)	2286
SsiI	CCGC	4 cut(s)	136, 947, 1095, 1883
SspMI	CTAG	7 cut(s)	507, 582, 1158, 1301, 1868, 2528, 2724
SstI	GAGCTC	2 cut(s)	581, 708
StyD4I	CCNGG	6 cut(s)	180, 181, 618, 809, 1120, 1121
StyI	CCWWGG	2 cut(s)	720, 2260
TaaI	ACNGT	6 cut(s)	369, 514, 1779, 1932, 2368, 2535
TaiI	ACGT	1 cut(s)	2014
TaqI	TCGA	3 cut(s)	296, 478, 2420
TatI	WGTACW	1 cut(s)	2530
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	8 cut(s)	418, 475, 653, 923, 1012, 1331, 1367, 1844
Tru1I	TTAA	4 cut(s)	33, 864, 1635, 2141
Tru9I	TTAA	4 cut(s)	33, 864, 1635, 2141
TscAI	CASTG	9 cut(s)	145, 1683, 1716, 1834, 2049, 2110, 2182, 2373, 2540
TseFI	GTSAC	4 cut(s)	1920, 1970, 2220, 2713
Tsp45I	GTSAC	4 cut(s)	1920, 1970, 2220, 2713
TspGWI	ACGGA	4 cut(s)	65, 600, 1010, 1611
TspMI	CCCGGG	2 cut(s)	181, 1121
TspRI	CASTG	9 cut(s)	145, 1683, 1716, 1834, 2049, 2110, 2182, 2373, 2540
Van91I	CCANNNNNTGG	1 cut(s)	283
VneI	GTGCAC	1 cut(s)	2265
VpaK11BI	GGWCC	4 cut(s)	1442, 1508, 1619, 1727
VspI	ATTAAT	1 cut(s)	1635
XapI	RAATTY	7 cut(s)	890, 1126, 1454, 1833, 2035, 2422, 2589
XceI	RCATGY	2 cut(s)	716, 2161
XmaI	CCCGGG	2 cut(s)	181, 1121
XmnI	GAANNNNTTC	3 cut(s)	652, 2314, 2641
XspI	CTAG	7 cut(s)	507, 582, 1158, 1301, 1868, 2528, 2724
Zsp2I	ATGCAT	2 cut(s)	1440, 1543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.