Rorug06G0216500

Protein TIME FOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008448
Physical Location & Seq
Forward (+)
34543083 .. 34549518
6436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0216500.1

Sequence Viewer

Length: 645 bp
ATGTGGATTGGGAGTTCATTGCTGAGGAGGACGAACGATGTGGAGTTAGGTGCCCAAAATTGGGAAGTTGTCACTGGTAAACATCGAATATCGGTGATTTGGGTATGGTCAATGCTTCATAACTCTCTTCCTCCTTGGTTCAGTGTGGCTCCTATGATGGAATGGCCTGATGTTCATTACAGGACTTTGGCCCGCCTCATATCCAAGCATGTCTGGCTCTACTCTGAGATGCTTGCTGCCGAAACCATTGTTTATCAGAAGGACAATCTGGCTACTGTAGGACCATGTAACACACCAGAGCCGAATGCTTGGAATGCAGTAGAGAAAAGCAAATGGAGTAGGTATGTATCCATGGCTGACATTGTTGATATATCATCATTAGTTTCTTCTTCGTTGGTTCGAATTATAGATTTTCGGCTCGTTCATGGCACTCCACTAGGGCATGCTAATATGCTCGTTTCTATCTATGCCGCACTTGAGGAGAAAGCAAAAGTGTCATTTCCTGTGAAAGATGAAATTGAAACAGTGAAGCAGGCTTTGGGGAGTTGTGTAGCATGGCCTAAACACTTGGTCATAAAATCACATGTCAAGAAACCTGCCATGCCGAGGATAATGTTGAGAAGAAGAAGAAAAGGAAAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

24.46

Weight (kDa)

9.84

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 135 - 192 5.7e-08 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 604
AccB1I GGYRCC 1 cut(s) 50
AciI CCGC 2 cut(s) 193, 471
AfiI CCNNNNNNNGG 3 cut(s) 60, 61, 606
AflIII ACRYGT 1 cut(s) 583
AgsI TTSAA 1 cut(s) 521
AjuI GAANNNNNNNTTGG 2 cut(s) 521, 553
AloI GAACNNNNNNTCC 1 cut(s) 30
AoxI GGCC 3 cut(s) 164, 189, 557
ApeKI GCWGC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 190, 281
AsuHPI GGTGA 1 cut(s) 106
AsuII TTCGAA 1 cut(s) 400
AvaII GGWCC 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 55
BanI GGYRCC 1 cut(s) 50
BbvCI CCTCAGC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 223
BccI CCATC 1 cut(s) 151
BciVI GTATCC 1 cut(s) 358
BfaI CTAG 1 cut(s) 437
BfmI CTRYAG 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 604
BfuI GTATCC 1 cut(s) 358
BisI GCNGC 2 cut(s) 237, 471
BlsI GCNGC 2 cut(s) 238, 472
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 190, 281
BmiI GGNNCC 2 cut(s) 52, 150
BmsI GCATC 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 23
Bpu14I TTCGAA 1 cut(s) 400
BpuEI CTTGAG 1 cut(s) 497
BsaJI CCNNGG 3 cut(s) 134, 351, 605
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 61, 606
Bse1I ACTGG 1 cut(s) 79
Bse3DI GCAATG 1 cut(s) 17
BseDI CCNNGG 3 cut(s) 134, 351, 605
BseLI CCNNNNNNNGG 3 cut(s) 60, 61, 606
BseMI GCAATG 1 cut(s) 17
BseMII CTCAG 2 cut(s) 14, 216
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 2 cut(s) 40, 494
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 1 cut(s) 223
BshFI GGCC 3 cut(s) 166, 191, 559
BshNI GGYRCC 1 cut(s) 50
BslI CCNNNNNNNGG 3 cut(s) 60, 61, 606
BsmI GAATGC 2 cut(s) 310, 319
BsnI GGCC 3 cut(s) 166, 191, 559
Bsp119I TTCGAA 1 cut(s) 400
Bsp1286I GDGCHC 1 cut(s) 55
Bsp19I CCATGG 1 cut(s) 351
BspACI CCGC 2 cut(s) 193, 471
BspANI GGCC 3 cut(s) 166, 191, 559
BspCNI CTCAG 2 cut(s) 15, 217
BspLI GGNNCC 2 cut(s) 52, 150
BspMI ACCTGC 1 cut(s) 604
BspT104I TTCGAA 1 cut(s) 400
BspT107I GGYRCC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 17
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 3 cut(s) 134, 351, 605
BssT1I CCWWGG 2 cut(s) 134, 351
Bst4CI ACNGT 2 cut(s) 277, 526
Bst6I CTCTTC 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 400
BstC8I GCNNGC 4 cut(s) 193, 234, 444, 534
BstDEI CTNAG 2 cut(s) 23, 225
BstDSI CCRYGG 1 cut(s) 351
BstMWI GCNNNNNNNGC 2 cut(s) 214, 314
BstNSI RCATGY 3 cut(s) 212, 446, 587
BstSFI CTRYAG 1 cut(s) 276
BstSLI GKGCMC 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 223
BsuI GTATCC 1 cut(s) 358
BsuRI GGCC 3 cut(s) 166, 191, 559
BtgI CCRYGG 1 cut(s) 351
BtsIMutI CAGTG 3 cut(s) 72, 148, 531
BveI ACCTGC 1 cut(s) 604
Cac8I GCNNGC 4 cut(s) 193, 234, 444, 534
Cfr13I GGNCC 2 cut(s) 190, 281
CviAII CATG 8 cut(s) 209, 285, 352, 425, 443, 555, 584, 601
DdeI CTNAG 2 cut(s) 23, 225
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco130I CCWWGG 2 cut(s) 134, 351
Eco47I GGWCC 1 cut(s) 281
EcoT14I CCWWGG 2 cut(s) 134, 351
ErhI CCWWGG 2 cut(s) 134, 351
FaeI CATG 8 cut(s) 212, 288, 355, 428, 446, 558, 587, 604
FatI CATG 8 cut(s) 208, 284, 351, 424, 442, 554, 583, 600
FauI CCCGC 1 cut(s) 200
Fnu4HI GCNGC 2 cut(s) 237, 471
Fsp4HI GCNGC 2 cut(s) 237, 471
FspBI CTAG 1 cut(s) 437
GluI GCNGC 2 cut(s) 237, 471
HaeIII GGCC 3 cut(s) 166, 191, 559
Hin1II CATG 8 cut(s) 212, 288, 355, 428, 446, 558, 587, 604
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 2 cut(s) 226, 258
Hpy188III TCNNGA 1 cut(s) 589
Hpy8I GTNNAC 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 2 cut(s) 277, 526
HpyCH4V TGCA 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 314
HpyF3I CTNAG 2 cut(s) 23, 225
Hsp92II CATG 8 cut(s) 212, 288, 355, 428, 446, 558, 587, 604
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 9 cut(s) 60, 166, 180, 199, 254, 309, 516, 518, 609
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 219
MaeI CTAG 1 cut(s) 437
MaeIII GTNAC 2 cut(s) 70, 287
MboII GAAGA 6 cut(s) 119, 378, 381, 633, 636, 639
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 3 cut(s) 58, 402, 516
MnlI CCTC 6 cut(s) 18, 21, 141, 206, 472, 600
Mva1269I GAATGC 2 cut(s) 310, 319
MwoI GCNNNNNNNGC 2 cut(s) 214, 314
NcoI CCATGG 1 cut(s) 351
NlaIII CATG 8 cut(s) 212, 288, 355, 428, 446, 558, 587, 604
NlaIV GGNNCC 2 cut(s) 52, 150
NmeAIII GCCGAG 1 cut(s) 630
NmuCI GTSAC 1 cut(s) 70
NspI RCATGY 3 cut(s) 212, 446, 587
NspV TTCGAA 1 cut(s) 400
PaeI GCATGC 1 cut(s) 446
PciI ACATGT 1 cut(s) 583
PctI GAATGC 2 cut(s) 310, 319
PkrI GCNGC 2 cut(s) 238, 472
PscI ACATGT 1 cut(s) 583
PspN4I GGNNCC 2 cut(s) 52, 150
PspPI GGNCC 2 cut(s) 190, 281
SatI GCNGC 2 cut(s) 237, 471
Sau96I GGNCC 2 cut(s) 190, 281
SduI GDGCHC 1 cut(s) 55
SetI ASST 3 cut(s) 52, 344, 598
SfaNI GCATC 1 cut(s) 219
SfcI CTRYAG 1 cut(s) 276
SfuI TTCGAA 1 cut(s) 400
SinI GGWCC 1 cut(s) 281
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
SphI GCATGC 1 cut(s) 446
Sse9I AATT 3 cut(s) 58, 402, 516
SsiI CCGC 2 cut(s) 193, 471
SspMI CTAG 1 cut(s) 437
StyI CCWWGG 2 cut(s) 134, 351
TaaI ACNGT 2 cut(s) 277, 526
TaqI TCGA 2 cut(s) 85, 400
TasI AATT 3 cut(s) 58, 402, 516
TauI GCSGC 1 cut(s) 473
TscAI CASTG 3 cut(s) 79, 148, 531
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 5 cut(s) 6, 107, 164, 413, 528
TspRI CASTG 3 cut(s) 79, 148, 531
VpaK11BI GGWCC 1 cut(s) 281
XceI RCATGY 3 cut(s) 212, 446, 587
XspI CTAG 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.