Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008448

Physical Location & Seq

Genomic Coordinates Forward (+)

15963769 .. 15967571

Gene Structure 3803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2757 bp

ATGAAATGGTATTCTTATGACTATAAAGCTATTAAAAACAGAGCAGAAACAGAGCATATGAAGGTGATGGAGAGAGTCGGGAGAGAAGCGAGAAGGTCAAGCATGGCTGCTGCTGCAAGTGATGGTCTTTCCGGCCGCCGTGAGATAGTGAGTAACAAGCGTAGGAGAGGAGAAGAGAACCCGGGACGCATGGATGAGGAAGATTGCAAGGTGGAGGTGGAAGACAATATGGTGCTTTCTCAGATGTCGTCATCATCATCGGCTCGCCGGAAAAACCATATGGTGGTGAAAGTCTCGAAGCAGGATCAGCCGTTGAAGTTGATCGGCGTTCAAGTTCCGAGGAAGGCTCGCTCAGCTTCAGGAAAACGGTCGCGTGAAAATAGTTCTTCAGGAAATGATGGGGTTGGGAAAGATCAGAATCTGCGGAAACTGAGCGTAGAACCGAGGAAGAAGATGAAACCAACTGGAGTCAAGAATCGACCTCCAAAATCGTTGAAATCGTCTTCTAGGACTGTAGAGGAGGAAACTGAGATTGAGATCGCCGAAGTTCTTTTCGGGTTGATGAAGCAATCTCAGAACTCTAGGGATAGTGATAGTGTTGAAAGCTCTCCGTCAAACCGGGAAGATAAAGAGAGATATGGCATTAGAAACGATTCTAAGACTTCAATCTCGGAACAGGAAAACAGCCATGTCTCTGATCCCGAGCTCAAAAATGTCTCCAAGGAGAACAATTCTAATGCAGAAGCAGTTGAAGTAGAAAGTGACCAGAAGCCAAAAATGGAAACTTCTTTGCCGAATTGGGAGCCGAAATCTGAAGATGTGTCCGGGTCAATAGAGTTGCAGAAGGAGGAAGCCGAGCCATTAGAGGTACCGGAGCTTAAAAGCAAGAGAGAGGACAAGTTTGAATTTGATCTCATGGCTCCTCCTCCTATGGAGGATTCGGCATCTGATAAACTTGTGGCGGAAGCTGTGCTTGAAACACCGCAAGACAGGAAGATAGAGGTAATCACGGAAACGATAAATGAGAATCCAAACCGAGATAGTGGGAGTAAATTACAACAGCAACCTAAGACTATCATTCCTAAACTGGAGAGAACTGACTGGCGAAGCGGCCTTTCAGCCACCACATTACAGCCCGGGAATTCATCTCTGTCTCAATCATGTGCTAAGACTAGATGCGCAACTCACCATTACATCGCTCGCAACATATACTTGCACCAGAAGGTTACAAATTTGAACAATCTCTGGCCAGCAGCAGGTGGTTCTGCTCCTCTATGTGGCACCAAGCCAGACATAGTTGTTGGAAACCCAAGTCTAGGAAGCGTCTCAGGTCAGAGTGCAAAGGAATCAAAAGATCAAAGTTCTGAGGCTGCATTCATAGAATCATCAAGAAGCAAGAAACTTGTGGCTCAACAATCTCCATCACAGCCGGCCTCTGCTGGTAAACTAATGCATGGACCTACTTTCAAATTCTCTGTGGGACAAAATCAAGCATCAGTTGCAGCAACCAGTAATCCATCTGGTCCTTTGAAATATACAGAGTTGACAAACAATGCATCACATTTTAGTCATTCAGCATTGTCAACAGTAGCTGCAGCAAGCCTCAGTAACCCGAATATGACATTCCAAGAAGGTCCGTACTTGGCAATTAACGGGTACTCATTCCCCATTTCAACTCCTTCAGGAACAACACTGGCATTTCAAGGAGGAAACTCTACTCAGGCAGTGCCTTCATATAATGGTCCTTTCTATACAAATCAAATGTTTCACCCTTCTCAGCTTCATCAGCAACAGCCTCACTCGCAGTTGCAGCATCAAGTCCGACCAATCCATCAAAAGAACACGGGAATTTCAACCGATTCATCATTGTTTCACAGGCAACTAGAGTCTCAGCAACCGCAGAAAACACAATTTAGCAGTATGCAATCACAGCAGTCACAAAAGCAGTATGTGCCACAATCCCTTCAGCCTTGCAAGCCTGAGGGTGACATCAATGGGGGGAATACTGCATCTTCTCAGGCGCAACGTAGTGTTTATGGTTATGGGCAGAATTTTGCAGTGCCACTTCAACCCATGAACTTTACCATGATGCCGTATGTAACATTGAGTGGTGGTGGCAGTGGAAATCACATTGAGCAATCACAACAACAGGACTTAAAGGGTGTCTTTGGCATGTCATTTGCCTCCATCAGTGGAAATAAGGGTACAGGTAAACTCCTGAACTTTTCATCCATGTCACAAAATCCAGCAATGTATCAAACCCTTCCAGCAACCCAAGGTGCACACCAAAACCATCATCACCATGTATCCGAAAGGAAGACTGGAAGCGTTTCCGACAATCCTGATCATGATGGGTCAAAAGCTGTTACTGGGAGGTCAACAGTGCAGACCCTTGTTTTTGATAATTCAGCAACAAATCTCAACTTCACAACCTCGAATTCTCATCAACAGCACCTCTACCAGTTTCAGCTTCAGCAGCAGCAACCTGCTATGGCAGCTAAGAGTAAAGCACCAAAGAGCGCTCCTGTCTTCTCACAAGCTCTAGTACAGTGCACTTCTTCTGTCCAATCTCCTAACAACTCCGGAAGATCATTGACTTCCCAAGTTCCGATTACAACTTCAGCAGTCAATAGTTTTCTTCAACAACAAGGAAGAGCTTCACAAGGTCAGACTCTTCTATCTTTTGGAGGAAGCCCTAAATCGTCCTTAGCAGTACCACAAGGTCAACTCACTAACCCTAGTCTGCTGACGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

918

Amino Acids

100.18

Weight (kDa)

9.1

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63180 AT3G63180
fragaria_vesca	FvH4_2g23490 FvH4_2g23490
malus_domestica	MD03G1263800.v1.1 MD11G1284500.v1.1
prunus_persica	Prupe.8G240200_v2.0.a1 Prupe.8G240200_v2.0.a1 Prupe.8G240200_v2.0.a1
pyrus_communis	pycom03g21150 pycom11g25200
rosa_chinensis	RchiOBHm_Chr6g0290961
rosa_laevigata	RLG00000012160
rosa_multiflora	Rmu_sc0001577.1_g000015
rosa_roxburghii	Rroxscaffold_7G00176510
rosa_rugosa	Rorug06G0216500 Rorug06G0216600 Rorug06G0216700
rosa_samantha	Rh6AG326400 Rh6BG334000 Rh6CG340100 Rh6DG327300
rosa_wichuraiana	Rw6G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1247
Acc16I	TGCGCA	1 cut(s)	1180
Acc36I	ACCTGC	2 cut(s)	1247, 2494
Acc65I	GGTACC	1 cut(s)	868
AccB1I	GGYRCC	2 cut(s)	868, 1280
AccB7I	CCANNNNNTGG	1 cut(s)	283
AccII	CGCG	1 cut(s)	373
AccIII	TCCGGA	1 cut(s)	2582
AciI	CCGC	6 cut(s)	136, 424, 962, 983, 1110, 1898
AclWI	GGATC	2 cut(s)	312, 692
AcoI	YGGCCR	2 cut(s)	133, 1247
AcsI	RAATTY	7 cut(s)	905, 1141, 1231, 1469, 1848, 2050, 2437
AcuI	CTGAAG	7 cut(s)	342, 372, 834, 1665, 1949, 2456, 2604
AfaI	GTAC	6 cut(s)	870, 1640, 1658, 2206, 2547, 2715
AfeI	AGCGCT	1 cut(s)	2521
AfiI	CCNNNNNNNGG	4 cut(s)	283, 1256, 1277, 1316
AloI	GAACNNNNNNTCC	2 cut(s)	2213, 2245
Alw21I	GWGCWC	3 cut(s)	708, 2284, 2555
Alw26I	GTCTC	6 cut(s)	298, 697, 721, 1158, 1330, 1893
Alw44I	GTGCAC	2 cut(s)	2280, 2551
AlwI	GGATC	2 cut(s)	312, 692
AlwNI	CAGNNNCTG	2 cut(s)	421, 1592
Ama87I	CYCGRG	3 cut(s)	181, 701, 1136
Aor13HI	TCCGGA	1 cut(s)	2582
Aor51HI	AGCGCT	1 cut(s)	2521
AoxI	GGCC	4 cut(s)	133, 1111, 1247, 1431
ApaLI	GTGCAC	2 cut(s)	2280, 2551
ApoI	RAATTY	7 cut(s)	905, 1141, 1231, 1469, 1848, 2050, 2437
Asp700I	GAANNNNTTC	3 cut(s)	652, 2329, 2656
Asp718I	GGTACC	1 cut(s)	868
AspLEI	GCGC	3 cut(s)	1181, 2023, 2522
AspS9I	GGNCC	4 cut(s)	1457, 1523, 1634, 1742
AsuC2I	CCSGG	6 cut(s)	182, 183, 620, 826, 1137, 1138
AsuHPI	GGTGA	6 cut(s)	76, 298, 1178, 1760, 1997, 2291
AvaI	CYCGRG	3 cut(s)	181, 701, 1136
AvaII	GGWCC	4 cut(s)	1457, 1523, 1634, 1742
AxyI	CCTNAGG	1 cut(s)	1980
BaeGI	GKGCMC	2 cut(s)	2284, 2555
BalI	TGGCCA	1 cut(s)	1249
BanI	GGYRCC	2 cut(s)	868, 1280
BanII	GRGCYC	1 cut(s)	708
BbsI	GAAGAC	4 cut(s)	228, 495, 2324, 2521
Bbv12I	GWGCWC	3 cut(s)	708, 2284, 2555
BccI	CCATC	9 cut(s)	61, 116, 392, 1429, 1525, 1839, 2195, 2301, 2345
BceAI	ACGGC	3 cut(s)	123, 295, 2077
BciVI	GTATCC	1 cut(s)	2317
BclI	TGATCA	1 cut(s)	2344
BcnI	CCSGG	6 cut(s)	182, 183, 620, 826, 1137, 1138
BcoDI	GTCTC	6 cut(s)	298, 697, 721, 1158, 1330, 1893
BfaI	CTAG	7 cut(s)	507, 582, 1173, 1316, 1883, 2543, 2739
BfmI	CTRYAG	2 cut(s)	513, 1593
BfoI	RGCGCY	1 cut(s)	2523
BfuAI	ACCTGC	2 cut(s)	1247, 2494
BfuI	GTATCC	1 cut(s)	2317
BlpI	GCTNAGC	1 cut(s)	352
Bme1390I	CCNGG	6 cut(s)	182, 183, 620, 826, 1137, 1138
Bme18I	GGWCC	4 cut(s)	1457, 1523, 1634, 1742
BmeT110I	CYCGRG	3 cut(s)	181, 701, 1136
BmgT120I	GGNCC	4 cut(s)	1457, 1523, 1634, 1742
BmiI	GGNNCC	4 cut(s)	804, 870, 921, 1282
BmrFI	CCNGG	6 cut(s)	182, 183, 620, 826, 1137, 1138
BmrI	ACTGGG	1 cut(s)	2379
BmsI	GCATC	7 cut(s)	953, 1166, 1502, 1565, 1822, 2018, 2079
BmuI	ACTGGG	1 cut(s)	2379
BpiI	GAAGAC	4 cut(s)	228, 495, 2324, 2521
BplI	GAGNNNNNCTC	2 cut(s)	331, 363
BpmI	CTGGAG	2 cut(s)	486, 1109
Bpu10I	CCTNAGC	1 cut(s)	2707
Bpu1102I	GCTNAGC	1 cut(s)	352
BpuMI	CCSGG	6 cut(s)	182, 183, 620, 826, 1137, 1138
BsaBI	GATNNNNATC	2 cut(s)	417, 536
BsaJI	CCNNGG	6 cut(s)	181, 338, 443, 720, 1136, 2275
BsaWI	WCCGGW	2 cut(s)	871, 2582
Bsc4I	CCNNNNNNNGG	4 cut(s)	283, 1256, 1277, 1316
Bse118I	RCCGGY	1 cut(s)	1429
Bse1I	ACTGG	8 cut(s)	469, 1092, 1106, 1509, 1698, 2326, 2374, 2461
Bse21I	CCTNAGG	1 cut(s)	1980
Bse3DI	GCAATG	1 cut(s)	2256
Bse8I	GATNNNNATC	2 cut(s)	417, 536
BseAI	TCCGGA	1 cut(s)	2582
BseDI	CCNNGG	6 cut(s)	181, 338, 443, 720, 1136, 2275
BseGI	GGATG	2 cut(s)	199, 2228
BseJI	GATNNNNATC	2 cut(s)	417, 536
BseLI	CCNNNNNNNGG	4 cut(s)	283, 1256, 1277, 1316
BseMI	GCAATG	1 cut(s)	2256
BseNI	ACTGG	8 cut(s)	469, 1092, 1106, 1509, 1698, 2326, 2374, 2461
BseRI	GAGGAG	5 cut(s)	183, 533, 912, 915, 1260
BseSI	GKGCMC	2 cut(s)	2284, 2555
BseX3I	CGGCCG	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	2405
Bsh1236I	CGCG	1 cut(s)	373
Bsh1285I	CGRYCG	2 cut(s)	136, 371
BshFI	GGCC	4 cut(s)	135, 1113, 1249, 1433
BshNI	GGYRCC	2 cut(s)	868, 1280
BsiEI	CGRYCG	2 cut(s)	136, 371
BsiHKAI	GWGCWC	3 cut(s)	708, 2284, 2555
BsiHKCI	CYCGRG	3 cut(s)	181, 701, 1136
BsiSI	CCGG	9 cut(s)	132, 182, 268, 619, 825, 872, 1137, 1430, 2583
BslFI	GGGAC	2 cut(s)	198, 1494
BslI	CCNNNNNNNGG	4 cut(s)	283, 1256, 1277, 1316
BsmAI	GTCTC	6 cut(s)	298, 697, 721, 1158, 1330, 1893
BsmBI	CGTCTC	1 cut(s)	1330
BsmFI	GGGAC	2 cut(s)	198, 1494
BsmI	GAATGC	1 cut(s)	1373
BsnI	GGCC	4 cut(s)	135, 1113, 1249, 1433
BsoBI	CYCGRG	3 cut(s)	181, 701, 1136
Bsp1286I	GDGCHC	3 cut(s)	708, 2284, 2555
Bsp13I	TCCGGA	1 cut(s)	2582
Bsp143I	GATC	9 cut(s)	304, 321, 412, 537, 697, 910, 1354, 2344, 2588
Bsp1720I	GCTNAGC	1 cut(s)	352
BspACI	CCGC	6 cut(s)	136, 424, 962, 983, 1110, 1898
BspANI	GGCC	4 cut(s)	135, 1113, 1249, 1433
BspEI	TCCGGA	1 cut(s)	2582
BspFNI	CGCG	1 cut(s)	373
BspHI	TCATGA	1 cut(s)	2347
BspLI	GGNNCC	4 cut(s)	804, 870, 921, 1282
BspMAI	CTGCAG	1 cut(s)	1597
BspMI	ACCTGC	2 cut(s)	1247, 2494
BspPI	GGATC	2 cut(s)	312, 692
BspQI	GCTCTTC	1 cut(s)	2647
BspT107I	GGYRCC	2 cut(s)	868, 1280
BsrDI	GCAATG	1 cut(s)	2256
BsrFI	RCCGGY	1 cut(s)	1429
BsrI	ACTGG	8 cut(s)	469, 1092, 1106, 1509, 1698, 2326, 2374, 2461
BssAI	RCCGGY	1 cut(s)	1429
BssECI	CCNNGG	6 cut(s)	181, 338, 443, 720, 1136, 2275
BssMI	GATC	9 cut(s)	304, 321, 412, 537, 697, 910, 1354, 2344, 2588
BssT1I	CCWWGG	2 cut(s)	720, 2275
Bst4CI	ACNGT	5 cut(s)	369, 514, 1588, 2383, 2550
Bst6I	CTCTTC	3 cut(s)	168, 2647, 2679
BstAPI	GCANNNNNTGC	2 cut(s)	1499, 1951
BstC8I	GCNNGC	7 cut(s)	265, 349, 1201, 1251, 1431, 1600, 1976
BstF5I	GGATG	2 cut(s)	199, 2228
BstFNI	CGCG	1 cut(s)	373
BstH2I	RGCGCY	1 cut(s)	2523
BstHHI	GCGC	3 cut(s)	1181, 2023, 2522
BstKTI	GATC	9 cut(s)	307, 324, 415, 540, 700, 913, 1357, 2347, 2591
BstMAI	GTCTC	6 cut(s)	298, 697, 721, 1158, 1330, 1893
BstMBI	GATC	9 cut(s)	304, 321, 412, 537, 697, 910, 1354, 2344, 2588
BstMCI	CGRYCG	2 cut(s)	136, 371
BstNSI	RCATGY	1 cut(s)	2176
BstSCI	CCNGG	6 cut(s)	180, 181, 618, 824, 1135, 1136
BstSFI	CTRYAG	2 cut(s)	513, 1593
BstSLI	GKGCMC	2 cut(s)	2284, 2555
BstUI	CGCG	1 cut(s)	373
BstV2I	GAAGAC	4 cut(s)	228, 495, 2324, 2521
BstZI	CGGCCG	1 cut(s)	133
Bsu36I	CCTNAGG	1 cut(s)	1980
BsuI	GTATCC	1 cut(s)	2317
BsuRI	GGCC	4 cut(s)	135, 1113, 1249, 1433
BtgZI	GCGATG	1 cut(s)	1180
BtsCI	GGATG	2 cut(s)	199, 2228
BtsI	GCAGTG	3 cut(s)	1731, 2064, 2125
BtsIMutI	CAGTG	7 cut(s)	1691, 1731, 2064, 2125, 2197, 2388, 2555
BveI	ACCTGC	2 cut(s)	1247, 2494
Cac8I	GCNNGC	7 cut(s)	265, 349, 1201, 1251, 1431, 1600, 1976
CaiI	CAGNNNCTG	2 cut(s)	421, 1592
CciI	TCATGA	1 cut(s)	2347
CfoI	GCGC	3 cut(s)	1181, 2023, 2522
Cfr10I	RCCGGY	1 cut(s)	1429
Cfr13I	GGNCC	4 cut(s)	1457, 1523, 1634, 1742
Cfr9I	CCCGGG	2 cut(s)	181, 1136
CseI	GACGC	2 cut(s)	195, 1312
Csp6I	GTAC	6 cut(s)	869, 1639, 1657, 2205, 2546, 2714
CviQI	GTAC	6 cut(s)	869, 1639, 1657, 2205, 2546, 2714
DpnI	GATC	9 cut(s)	306, 323, 414, 539, 699, 912, 1356, 2346, 2590
DpnII	GATC	9 cut(s)	304, 321, 412, 537, 697, 910, 1354, 2344, 2588
EaeI	YGGCCR	2 cut(s)	133, 1247
EagI	CGGCCG	1 cut(s)	133
Eam1104I	CTCTTC	3 cut(s)	168, 2647, 2679
EarI	CTCTTC	3 cut(s)	168, 2647, 2679
EciI	GGCGGA	1 cut(s)	977
Ecl136II	GAGCTC	1 cut(s)	706
EclXI	CGGCCG	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	720, 2275
Eco24I	GRGCYC	1 cut(s)	708
Eco47I	GGWCC	4 cut(s)	1457, 1523, 1634, 1742
Eco47III	AGCGCT	1 cut(s)	2521
Eco52I	CGGCCG	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	706
Eco57I	CTGAAG	7 cut(s)	342, 372, 834, 1665, 1949, 2456, 2604
Eco81I	CCTNAGG	1 cut(s)	1980
Eco88I	CYCGRG	3 cut(s)	181, 701, 1136
EcoICRI	GAGCTC	1 cut(s)	706
EcoRI	GAATTC	2 cut(s)	1141, 2437
EcoT14I	CCWWGG	2 cut(s)	720, 2275
EcoT22I	ATGCAT	2 cut(s)	1455, 1558
EcoT38I	GRGCYC	1 cut(s)	708
ErhI	CCWWGG	2 cut(s)	720, 2275
Esp3I	CGTCTC	1 cut(s)	1330
FalI	AAGNNNNNCTT	4 cut(s)	957, 989, 2150, 2182
FaqI	GGGAC	2 cut(s)	198, 1494
FauNDI	CATATG	2 cut(s)	57, 279
FbaI	TGATCA	1 cut(s)	2344
FokI	GGATG	2 cut(s)	206, 2215
FriOI	GRGCYC	1 cut(s)	708
FspBI	CTAG	7 cut(s)	507, 582, 1173, 1316, 1883, 2543, 2739
FspI	TGCGCA	1 cut(s)	1180
GlaI	GCGC	3 cut(s)	1180, 2022, 2521
GsuI	CTGGAG	2 cut(s)	486, 1109
HaeII	RGCGCY	1 cut(s)	2523
HaeIII	GGCC	4 cut(s)	135, 1113, 1249, 1433
HapII	CCGG	9 cut(s)	132, 182, 268, 619, 825, 872, 1137, 1430, 2583
HgaI	GACGC	2 cut(s)	195, 1312
HhaI	GCGC	3 cut(s)	1181, 2023, 2522
Hin6I	GCGC	3 cut(s)	1179, 2021, 2520
HinP1I	GCGC	3 cut(s)	1179, 2021, 2520
HincII	GTYRAC	4 cut(s)	1545, 1584, 2379, 2726
HindII	GTYRAC	4 cut(s)	1545, 1584, 2379, 2726
HpaII	CCGG	9 cut(s)	132, 182, 268, 619, 825, 872, 1137, 1430, 2583
HphI	GGTGA	6 cut(s)	76, 298, 1178, 1760, 1997, 2291
Hpy166II	GTNNAC	8 cut(s)	1445, 1545, 1584, 2213, 2282, 2379, 2553, 2726
Hpy8I	GTNNAC	8 cut(s)	1445, 1545, 1584, 2213, 2282, 2379, 2553, 2726
HpyCH4III	ACNGT	5 cut(s)	369, 514, 1588, 2383, 2550
HpyCH4IV	ACGT	1 cut(s)	2026
HpySE526I	ACGT	1 cut(s)	2026
HspAI	GCGC	3 cut(s)	1179, 2021, 2520
Kpn2I	TCCGGA	1 cut(s)	2582
KpnI	GGTACC	1 cut(s)	872
KroI	GCCGGC	1 cut(s)	1429
KroNI	GCCGGC	1 cut(s)	1431
Ksp22I	TGATCA	1 cut(s)	2344
Kzo9I	GATC	9 cut(s)	304, 321, 412, 537, 697, 910, 1354, 2344, 2588
LguI	GCTCTTC	1 cut(s)	2647
LmnI	GCTCC	5 cut(s)	802, 874, 925, 1273, 2527
LweI	GCATC	7 cut(s)	953, 1166, 1502, 1565, 1822, 2018, 2079
MaeI	CTAG	7 cut(s)	507, 582, 1173, 1316, 1883, 2543, 2739
MaeII	ACGT	1 cut(s)	2026
MaeIII	GTNAC	9 cut(s)	152, 761, 1225, 1607, 1935, 1985, 2098, 2235, 2365
MalI	GATC	9 cut(s)	306, 323, 414, 539, 699, 912, 1356, 2346, 2590
MboI	GATC	9 cut(s)	304, 321, 412, 537, 697, 910, 1354, 2344, 2588
MhlI	GDGCHC	3 cut(s)	708, 2284, 2555
MlsI	TGGCCA	1 cut(s)	1249
MluNI	TGGCCA	1 cut(s)	1249
MlyI	GAGTC	4 cut(s)	84, 477, 1895, 2665
MmeI	TCCRAC	3 cut(s)	1282, 1846, 2358
Mox20I	TGGCCA	1 cut(s)	1249
Mph1103I	ATGCAT	2 cut(s)	1455, 1558
MroI	TCCGGA	1 cut(s)	2582
MroNI	GCCGGC	1 cut(s)	1429
MroXI	GAANNNNTTC	3 cut(s)	652, 2329, 2656
MscI	TGGCCA	1 cut(s)	1249
MseI	TTAA	4 cut(s)	33, 879, 1650, 2156
MslI	CAYNNNNRTG	1 cut(s)	2301
Msp20I	TGGCCA	1 cut(s)	1249
MspI	CCGG	9 cut(s)	132, 182, 268, 619, 825, 872, 1137, 1430, 2583
MspR9I	CCNGG	6 cut(s)	182, 183, 620, 826, 1137, 1138
Mva1269I	GAATGC	1 cut(s)	1373
MvnI	CGCG	1 cut(s)	373
NaeI	GCCGGC	1 cut(s)	1431
NciI	CCSGG	6 cut(s)	182, 183, 620, 826, 1137, 1138
NdeI	CATATG	2 cut(s)	57, 279
NdeII	GATC	9 cut(s)	304, 321, 412, 537, 697, 910, 1354, 2344, 2588
NgoMIV	GCCGGC	1 cut(s)	1429
NlaIV	GGNNCC	4 cut(s)	804, 870, 921, 1282
NmeAIII	GCCGAG	1 cut(s)	880
NmuCI	GTSAC	4 cut(s)	761, 1935, 1985, 2235
NsbI	TGCGCA	1 cut(s)	1180
NsiI	ATGCAT	2 cut(s)	1455, 1558
NspI	RCATGY	1 cut(s)	2176
PagI	TCATGA	1 cut(s)	2347
PaqCI	CACCTGC	1 cut(s)	1247
PciSI	GCTCTTC	1 cut(s)	2647
PcsI	WCGNNNNNNNCGW	1 cut(s)	497
PctI	GAATGC	1 cut(s)	1373
PdiI	GCCGGC	1 cut(s)	1431
PdmI	GAANNNNTTC	3 cut(s)	652, 2329, 2656
PfeI	GAWTC	8 cut(s)	418, 475, 653, 938, 1027, 1346, 1382, 1859
PflMI	CCANNNNNTGG	1 cut(s)	283
PleI	GAGTC	4 cut(s)	83, 476, 1894, 2665
PpsI	GAGTC	4 cut(s)	83, 476, 1894, 2665
Psp124BI	GAGCTC	1 cut(s)	708
PspN4I	GGNNCC	4 cut(s)	804, 870, 921, 1282
PspPI	GGNCC	4 cut(s)	1457, 1523, 1634, 1742
PstI	CTGCAG	1 cut(s)	1597
PstNI	CAGNNNCTG	2 cut(s)	421, 1592
RsaI	GTAC	6 cut(s)	870, 1640, 1658, 2206, 2547, 2715
RsaNI	GTAC	6 cut(s)	869, 1639, 1657, 2205, 2546, 2714
RseI	CAYNNNNRTG	1 cut(s)	2301
SacI	GAGCTC	1 cut(s)	708
SapI	GCTCTTC	1 cut(s)	2647
SaqAI	TTAA	4 cut(s)	33, 879, 1650, 2156
Sau3AI	GATC	9 cut(s)	304, 321, 412, 537, 697, 910, 1354, 2344, 2588
Sau96I	GGNCC	4 cut(s)	1457, 1523, 1634, 1742
SchI	GAGTC	4 cut(s)	84, 477, 1895, 2665
ScrFI	CCNGG	6 cut(s)	182, 183, 620, 826, 1137, 1138
SduI	GDGCHC	3 cut(s)	708, 2284, 2555
SfaNI	GCATC	7 cut(s)	953, 1166, 1502, 1565, 1822, 2018, 2079
SfcI	CTRYAG	2 cut(s)	513, 1593
SinI	GGWCC	4 cut(s)	1457, 1523, 1634, 1742
SmaI	CCCGGG	2 cut(s)	183, 1138
SmiMI	CAYNNNNRTG	1 cut(s)	2301
SsiI	CCGC	6 cut(s)	136, 424, 962, 983, 1110, 1898
SspMI	CTAG	7 cut(s)	507, 582, 1173, 1316, 1883, 2543, 2739
SstI	GAGCTC	1 cut(s)	708
StyD4I	CCNGG	6 cut(s)	180, 181, 618, 824, 1135, 1136
StyI	CCWWGG	2 cut(s)	720, 2275
TaaI	ACNGT	5 cut(s)	369, 514, 1588, 2383, 2550
TaiI	ACGT	1 cut(s)	2029
TaqI	TCGA	3 cut(s)	296, 478, 2435
TatI	WGTACW	1 cut(s)	2545
TauI	GCSGC	2 cut(s)	138, 1113
TfiI	GAWTC	8 cut(s)	418, 475, 653, 938, 1027, 1346, 1382, 1859
Tru1I	TTAA	4 cut(s)	33, 879, 1650, 2156
Tru9I	TTAA	4 cut(s)	33, 879, 1650, 2156
TscAI	CASTG	7 cut(s)	1698, 1731, 2064, 2125, 2197, 2388, 2555
TseFI	GTSAC	4 cut(s)	761, 1935, 1985, 2235
Tsp45I	GTSAC	4 cut(s)	761, 1935, 1985, 2235
TspGWI	ACGGA	3 cut(s)	600, 1025, 1626
TspMI	CCCGGG	2 cut(s)	181, 1136
TspRI	CASTG	7 cut(s)	1698, 1731, 2064, 2125, 2197, 2388, 2555
Van91I	CCANNNNNTGG	1 cut(s)	283
VneI	GTGCAC	2 cut(s)	2280, 2551
VpaK11BI	GGWCC	4 cut(s)	1457, 1523, 1634, 1742
XapI	RAATTY	7 cut(s)	905, 1141, 1231, 1469, 1848, 2050, 2437
XceI	RCATGY	1 cut(s)	2176
XmaI	CCCGGG	2 cut(s)	181, 1136
XmnI	GAANNNNTTC	3 cut(s)	652, 2329, 2656
XspI	CTAG	7 cut(s)	507, 582, 1173, 1316, 1883, 2543, 2739
Zsp2I	ATGCAT	2 cut(s)	1455, 1558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.