pycom01g04620

UDP-galactose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0009931
Physical Location & Seq
Reverse (-)
3593901 .. 3596275
2375 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 687 bp
ATGGCTTCAGCAGGCAAAGCTGATCGGAAGGCTTCTCTTGATGCTGCCTCATGGTTGTTCAATGTTGTCACATCTGTTGGAATAATCATTGTCAATAAATCGTTGATGGCTACGCACGGTTTCAGTTTTGCTACAACATTAACGGGTCTGCATTTTGCCACAACAACCTTACTGACTGTTGTTCTTAAATGGCTGGGATATATCCAGCCCTCTCAGCTACCATTATCTGATCTTTTGAAGTTTGTTTTATTTGCGAATTTCTCCATAGTCGGCATGAATGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGATTGCGAAGCTGACTATGATACCAGTATCATGTTTTCTAGAAGTTGTCTTGGACAACGTGCGTTACTCAAGGGGCACAAAGCTAAGCATAGCACTGGTTCTCCTTGGAGTTGCAGTTTGTACTGTTACTGATGTCAGTGTCAATGCCAAGGGTTTTCTAGCTGCTTTAGTGGCAGTTTGGAGCACTGCCCTACAACAGCATTATGTACACTCTCTTCAACGGAAGTATTCTCTTGGATCTTTCAATTTATTGGGACATACTGCGCCAGTACAGGCTGCATCTTTGCTGATATTAGGCCCCTTCTTGGACTACTGGTTGACAAATAAAATAGTTTACGCGTACGACTATCATTTGATATCCATGAGATATTAG

Protein Analysis

229

Amino Acids

25.01

Weight (kDa)

9.46

Isoelectric Point (pI)

23.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 23 - 206 1.8e-09 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009931)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39390 AT4G39390 AT4G39390
fragaria_vesca FvH4_1g23140
malus_domestica MD01G1014300.v1.1 MD15G1336400.v1.1
prunus_persica Prupe.6G168000_v2.0.a1 Prupe.6G168000_v2.0.a1
pyrus_communis pycom01g04620 pycom15g28940
rosa_chinensis RchiOBHm_Chr2g0117861
rosa_laevigata RLG00000018380
rosa_multiflora Rmu_sc0011918.1_g000001
rosa_roxburghii Rroxscaffold_2G00126160
rosa_rugosa Rorug02G0214600
rosa_samantha Rh2AG270800 Rh2BG282300 Rh2CG268800 Rh2DG278600 Rh2DG296500
rosa_wichuraiana Rw2G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 653
AclWI GGATC 1 cut(s) 559
AcsI RAATTY 1 cut(s) 256
AfaI GTAC 4 cut(s) 436, 522, 585, 656
AfiI CCNNNNNNNGG 1 cut(s) 619
AflIII ACRYGT 1 cut(s) 651
AgsI TTSAA 4 cut(s) 61, 238, 533, 559
AluBI AGCT 5 cut(s) 20, 217, 325, 397, 476
AluI AGCT 5 cut(s) 20, 217, 325, 397, 476
Alw21I GWGCWC 1 cut(s) 500
AlwI GGATC 1 cut(s) 559
AoxI GGCC 1 cut(s) 610
ApeKI GCWGC 3 cut(s) 44, 476, 590
ApoI RAATTY 1 cut(s) 256
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 1 cut(s) 611
BaeGI GKGCMC 1 cut(s) 392
BarI GAAGNNNNNNTAC 2 cut(s) 513, 545
Bbv12I GWGCWC 1 cut(s) 500
BbvI GCAGC 3 cut(s) 31, 463, 577
BccI CCATC 1 cut(s) 100
BfaI CTAG 2 cut(s) 353, 473
BisI GCNGC 3 cut(s) 45, 477, 591
BlpI GCTNAGC 1 cut(s) 398
BlsI GCNGC 3 cut(s) 46, 478, 592
BmgT120I GGNCC 1 cut(s) 611
BmiI GGNNCC 1 cut(s) 613
BmsI GCATC 2 cut(s) 31, 602
Bpu1102I GCTNAGC 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 418, 462
BsaXI ACNNNNNCTCC 4 cut(s) 399, 414, 429, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 619
Bse1I ACTGG 4 cut(s) 338, 414, 581, 632
BseDI CCNNGG 2 cut(s) 418, 462
BseLI CCNNNNNNNGG 1 cut(s) 619
BseMII CTCAG 1 cut(s) 227
BseNI ACTGG 4 cut(s) 338, 414, 581, 632
BseSI GKGCMC 1 cut(s) 392
BseXI GCAGC 3 cut(s) 31, 463, 577
BseYI CCCAGC 1 cut(s) 193
Bsh1236I CGCG 1 cut(s) 653
BshFI GGCC 1 cut(s) 612
BsiHKAI GWGCWC 1 cut(s) 500
BsiWI CGTACG 1 cut(s) 654
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 1 cut(s) 619
BsmFI GGGAC 1 cut(s) 582
BsnI GGCC 1 cut(s) 612
Bsp1286I GDGCHC 2 cut(s) 392, 500
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 3 cut(s) 22, 229, 551
Bsp1720I GCTNAGC 1 cut(s) 398
BspANI GGCC 1 cut(s) 612
BspCNI CTCAG 1 cut(s) 226
BspFNI CGCG 1 cut(s) 653
BspLI GGNNCC 1 cut(s) 613
BspPI GGATC 1 cut(s) 559
BsrGI TGTACA 1 cut(s) 520
BsrI ACTGG 4 cut(s) 338, 414, 581, 632
BssECI CCNNGG 2 cut(s) 418, 462
BssMI GATC 3 cut(s) 22, 229, 551
BssT1I CCWWGG 2 cut(s) 418, 462
Bst4CI ACNGT 3 cut(s) 119, 178, 439
Bst6I CTCTTC 1 cut(s) 534
BstAUI TGTACA 1 cut(s) 520
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 2 cut(s) 213, 398
BstFNI CGCG 1 cut(s) 653
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 3 cut(s) 25, 232, 554
BstMBI GATC 3 cut(s) 22, 229, 551
BstMWI GCNNNNNNNGC 3 cut(s) 17, 214, 485
BstSLI GKGCMC 1 cut(s) 392
BstUI CGCG 1 cut(s) 653
BstV1I GCAGC 3 cut(s) 31, 463, 577
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
BsuRI GGCC 1 cut(s) 612
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 3 cut(s) 407, 457, 498
Cac8I GCNNGC 1 cut(s) 13
CfoI GCGC 1 cut(s) 580
Cfr13I GGNCC 1 cut(s) 611
Csp6I GTAC 4 cut(s) 435, 521, 584, 655
CviAII CATG 4 cut(s) 51, 274, 345, 676
CviQI GTAC 4 cut(s) 435, 521, 584, 655
DdeI CTNAG 2 cut(s) 213, 398
DpnI GATC 3 cut(s) 24, 231, 553
DpnII GATC 3 cut(s) 22, 229, 551
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Eco130I CCWWGG 2 cut(s) 418, 462
Eco32I GATATC 1 cut(s) 672
EcoO109I RGGNCCY 1 cut(s) 611
EcoRV GATATC 1 cut(s) 672
EcoT14I CCWWGG 2 cut(s) 418, 462
ErhI CCWWGG 2 cut(s) 418, 462
FaeI CATG 4 cut(s) 54, 277, 348, 679
FaqI GGGAC 1 cut(s) 582
FatI CATG 4 cut(s) 50, 273, 344, 675
Fnu4HI GCNGC 3 cut(s) 45, 477, 591
Fsp4HI GCNGC 3 cut(s) 45, 477, 591
FspBI CTAG 2 cut(s) 353, 473
GlaI GCGC 1 cut(s) 579
GluI GCNGC 3 cut(s) 45, 477, 591
GsaI CCCAGC 1 cut(s) 197
HaeIII GGCC 1 cut(s) 612
HhaI GCGC 1 cut(s) 580
Hin1II CATG 4 cut(s) 54, 277, 348, 679
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HincII GTYRAC 1 cut(s) 633
HindII GTYRAC 1 cut(s) 633
HinfI GANTC 1 cut(s) 306
Hpy166II GTNNAC 3 cut(s) 523, 633, 649
Hpy188I TCNGA 3 cut(s) 27, 229, 315
Hpy188III TCNNGA 2 cut(s) 38, 353
Hpy8I GTNNAC 3 cut(s) 523, 633, 649
HpyAV CCTTC 2 cut(s) 22, 625
HpyCH4III ACNGT 3 cut(s) 119, 178, 439
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 3 cut(s) 151, 428, 593
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 214, 485
HpyF3I CTNAG 2 cut(s) 213, 398
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 4 cut(s) 54, 277, 348, 679
HspAI GCGC 1 cut(s) 578
Kzo9I GATC 3 cut(s) 22, 229, 551
LmnI GCTCC 1 cut(s) 495
LpnPI CCDG 7 cut(s) 179, 218, 351, 395, 572, 594, 613
Lsp1109I GCAGC 3 cut(s) 31, 463, 577
LweI GCATC 2 cut(s) 31, 602
MaeI CTAG 2 cut(s) 353, 473
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 3 cut(s) 67, 377, 439
MalI GATC 3 cut(s) 24, 231, 553
MboI GATC 3 cut(s) 22, 229, 551
MboII GAAGA 1 cut(s) 521
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 2 cut(s) 392, 500
MluCI AATT 2 cut(s) 256, 559
MluI ACGCGT 1 cut(s) 651
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 2 cut(s) 58, 220
MseI TTAA 3 cut(s) 140, 186, 287
MslI CAYNNNNRTG 1 cut(s) 278
MvnI CGCG 1 cut(s) 653
MwoI GCNNNNNNNGC 3 cut(s) 17, 214, 485
NdeII GATC 3 cut(s) 22, 229, 551
NlaIII CATG 4 cut(s) 54, 277, 348, 679
NlaIV GGNNCC 1 cut(s) 613
NmuCI GTSAC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 306
Pfl23II CGTACG 1 cut(s) 654
PkrI GCNGC 3 cut(s) 46, 478, 592
PspFI CCCAGC 1 cut(s) 193
PspLI CGTACG 1 cut(s) 654
PspN4I GGNNCC 1 cut(s) 613
PspPI GGNCC 1 cut(s) 611
PsuI RGATCY 1 cut(s) 551
RsaI GTAC 4 cut(s) 436, 522, 585, 656
RsaNI GTAC 4 cut(s) 435, 521, 584, 655
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 3 cut(s) 140, 186, 287
SatI GCNGC 3 cut(s) 45, 477, 591
Sau3AI GATC 3 cut(s) 22, 229, 551
Sau96I GGNCC 1 cut(s) 611
SduI GDGCHC 2 cut(s) 392, 500
SetI ASST 7 cut(s) 22, 170, 219, 327, 375, 399, 478
SfaNI GCATC 2 cut(s) 31, 602
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 2 cut(s) 256, 559
SspMI CTAG 2 cut(s) 353, 473
StyI CCWWGG 2 cut(s) 418, 462
TaaI ACNGT 3 cut(s) 119, 178, 439
TaiI ACGT 1 cut(s) 375
TasI AATT 2 cut(s) 256, 559
TatI WGTACW 3 cut(s) 434, 520, 583
TfiI GAWTC 1 cut(s) 306
Tru1I TTAA 3 cut(s) 140, 186, 287
Tru9I TTAA 3 cut(s) 140, 186, 287
TscAI CASTG 3 cut(s) 414, 457, 505
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 3 cut(s) 44, 476, 590
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 290
TspGWI ACGGA 1 cut(s) 550
TspRI CASTG 3 cut(s) 414, 457, 505
XapI RAATTY 1 cut(s) 256
XbaI TCTAGA 1 cut(s) 352
XspI CTAG 2 cut(s) 353, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.