Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003810

Physical Location & Seq

Genomic Coordinates Reverse (-)

10464671 .. 10466395

Gene Structure 1725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g09630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAATCAGAATGCCATGGCTTCGAATTCGATTCTTTGTTGCTCTTCCCATTTAAATCCCAGTCTATTCGTCGTCGTTTTCTGGTTATTCGTCCACTGCTATTCGTATGGCGAACTGGGTCCGTACAGCAGCTTCACTGTCTCCTGCTTCAGCTACCCACCAACCACAATTGGACCCTCTGGATTTCGATATATTAGAGTTGAAATGCCACCATGGTTCTCGTCGATAGCAATGAATTCGAACGTGGAACTTAGTTCACAGCAGTGCTATCCGATGCAAAAGAATTTTACACTCAAGTTGACAAATGAGCAGGTCTATCATCAAACCTTTTACTTATTTTTGTACACTTTTGGAGAGGGAAAGTTTGCTCGAAAATTTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3522

Protein Analysis

128

Amino Acids

14.66

Weight (kDa)

8.29

Isoelectric Point (pI)

32.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46060 AT2G46060 AT2G46060
fragaria_vesca	FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850
malus_domestica	MD01G1067200.v1.1 MD07G1133800.v1.1
prunus_persica	Prupe.2G173600_v2.0.a1 Prupe.2G173600_v2.0.a1 Prupe.2G173600_v2.0.a1 Prupe.2G173600_v2.0.a1 Prupe.2G173600_v2.0.a1
pyrus_communis	pycom01g09620 pycom01g09630 pycom07g13130
rosa_chinensis	RchiOBHm_Chr1g0356801
rosa_laevigata	RLG00000028082
rosa_multiflora	Rmu_sc0000517.1_g000032
rosa_roxburghii	Rroxscaffold_4G00299350
rosa_rugosa	Rorug01G0251200 Rorug01G0251300
rosa_samantha	Rh1AG265600 Rh1BG233100 Rh1CG249000 Rh1DG260600
rosa_wichuraiana	Rw1G023470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	301
AcsI	RAATTY	4 cut(s)	25, 235, 283, 374
AcuI	CTGAAG	1 cut(s)	133
AfaI	GTAC	2 cut(s)	125, 344
AgsI	TTSAA	1 cut(s)	203
AleI	CACNNNNGTG	1 cut(s)	262
AluBI	AGCT	2 cut(s)	132, 153
AluI	AGCT	2 cut(s)	132, 153
Alw26I	GTCTC	1 cut(s)	145
ApeKI	GCWGC	1 cut(s)	129
ApoI	RAATTY	4 cut(s)	25, 235, 283, 374
AspS9I	GGNCC	2 cut(s)	119, 173
AsuII	TTCGAA	2 cut(s)	23, 239
AvaII	GGWCC	2 cut(s)	119, 173
BarI	GAAGNNNNNNTAC	2 cut(s)	116, 148
BbvI	GCAGC	1 cut(s)	141
BcgI	CGANNNNNNTGC	2 cut(s)	219, 253
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	1 cut(s)	382
BfuAI	ACCTGC	1 cut(s)	301
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
Bme18I	GGWCC	2 cut(s)	119, 173
BmgT120I	GGNCC	2 cut(s)	119, 173
BmiI	GGNNCC	2 cut(s)	120, 175
BmrI	ACTGGG	2 cut(s)	54, 125
BmsI	GCATC	1 cut(s)	264
BmuI	ACTGGG	2 cut(s)	54, 125
Bpu14I	TTCGAA	2 cut(s)	23, 239
BpuEI	CTTGAG	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	15, 212
Bse1I	ACTGG	2 cut(s)	60, 120
Bse3DI	GCAATG	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	15, 212
BseMI	GCAATG	1 cut(s)	237
BseNI	ACTGG	2 cut(s)	60, 120
BseXI	GCAGC	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	145
BsmI	GAATGC	1 cut(s)	16
Bsp119I	TTCGAA	2 cut(s)	23, 239
Bsp1407I	TGTACA	1 cut(s)	342
Bsp19I	CCATGG	2 cut(s)	15, 212
BspLI	GGNNCC	2 cut(s)	120, 175
BspMI	ACCTGC	1 cut(s)	301
BspQI	GCTCTTC	1 cut(s)	49
BspT104I	TTCGAA	2 cut(s)	23, 239
BsrDI	GCAATG	1 cut(s)	237
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	60, 120
BssECI	CCNNGG	2 cut(s)	15, 212
BssT1I	CCWWGG	2 cut(s)	15, 212
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	49
BstAUI	TGTACA	1 cut(s)	342
BstBI	TTCGAA	2 cut(s)	23, 239
BstDEI	CTNAG	1 cut(s)	251
BstDSI	CCRYGG	2 cut(s)	15, 212
BstMAI	GTCTC	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	141
BtgI	CCRYGG	2 cut(s)	15, 212
BtsI	GCAGTG	2 cut(s)	94, 269
BtsIMutI	CAGTG	3 cut(s)	94, 135, 269
BveI	ACCTGC	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	119, 173
Csp6I	GTAC	2 cut(s)	124, 343
CviAII	CATG	2 cut(s)	16, 213
CviJI	RGCY	3 cut(s)	20, 132, 153
CviKI_1	RGCY	3 cut(s)	20, 132, 153
CviQI	GTAC	2 cut(s)	124, 343
DdeI	CTNAG	1 cut(s)	251
DraI	TTTAAA	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	15, 212
Eco47I	GGWCC	2 cut(s)	119, 173
Eco57I	CTGAAG	1 cut(s)	133
EcoRI	GAATTC	2 cut(s)	25, 235
EcoT14I	CCWWGG	2 cut(s)	15, 212
ErhI	CCWWGG	2 cut(s)	15, 212
FaeI	CATG	2 cut(s)	19, 216
FaiI	YATR	4 cut(s)	17, 108, 192, 214
FatI	CATG	2 cut(s)	15, 212
Fnu4HI	GCNGC	1 cut(s)	130
Fsp4HI	GCNGC	1 cut(s)	130
FspBI	CTAG	1 cut(s)	382
GluI	GCNGC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	19, 216
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	2 cut(s)	4, 31
Hpy166II	GTNNAC	4 cut(s)	94, 257, 300, 345
Hpy188I	TCNGA	2 cut(s)	9, 273
Hpy188III	TCNNGA	1 cut(s)	180
Hpy8I	GTNNAC	4 cut(s)	94, 257, 300, 345
Hpy99I	CGWCG	3 cut(s)	74, 77, 226
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	277
HpyF3I	CTNAG	1 cut(s)	251
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	19, 216
LguI	GCTCTTC	1 cut(s)	49
LpnPI	CCDG	6 cut(s)	67, 73, 101, 157, 165, 296
Lsp1109I	GCAGC	1 cut(s)	141
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	1 cut(s)	382
MaeII	ACGT	1 cut(s)	243
MboII	GAAGA	1 cut(s)	36
MfeI	CAATTG	1 cut(s)	168
MluCI	AATT	5 cut(s)	25, 168, 235, 283, 374
MnlI	CCTC	2 cut(s)	187, 349
MseI	TTAA	2 cut(s)	53, 378
MslI	CAYNNNNRTG	1 cut(s)	262
MunI	CAATTG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	16
NcoI	CCATGG	2 cut(s)	15, 212
NlaIII	CATG	2 cut(s)	19, 216
NlaIV	GGNNCC	2 cut(s)	120, 175
NspV	TTCGAA	2 cut(s)	23, 239
OliI	CACNNNNGTG	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	49
PctI	GAATGC	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	4, 31
PkrI	GCNGC	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	120, 175
PspPI	GGNCC	2 cut(s)	119, 173
RsaI	GTAC	2 cut(s)	125, 344
RsaNI	GTAC	2 cut(s)	124, 343
RseI	CAYNNNNRTG	1 cut(s)	262
SapI	GCTCTTC	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	53, 378
SatI	GCNGC	1 cut(s)	130
Sau96I	GGNCC	2 cut(s)	119, 173
SetI	ASST	5 cut(s)	134, 155, 246, 315, 329
SfaNI	GCATC	1 cut(s)	264
SfuI	TTCGAA	2 cut(s)	23, 239
SinI	GGWCC	2 cut(s)	119, 173
SmiI	ATTTAAAT	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	262
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	5 cut(s)	25, 168, 235, 283, 374
SspMI	CTAG	1 cut(s)	382
StyI	CCWWGG	2 cut(s)	15, 212
SwaI	ATTTAAAT	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	6 cut(s)	23, 29, 187, 224, 239, 370
TasI	AATT	5 cut(s)	25, 168, 235, 283, 374
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	4, 31
Tru1I	TTAA	2 cut(s)	53, 378
Tru9I	TTAA	2 cut(s)	53, 378
TscAI	CASTG	3 cut(s)	101, 142, 269
TseI	GCWGC	1 cut(s)	129
TspDTI	ATGAA	2 cut(s)	17, 248
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	3 cut(s)	101, 142, 269
VpaK11BI	GGWCC	2 cut(s)	119, 173
XapI	RAATTY	4 cut(s)	25, 235, 283, 374
XspI	CTAG	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.