Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003810

Physical Location & Seq

Genomic Coordinates Reverse (-)

35929151 .. 35935290

Gene Structure 6140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0251300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGATTGGGCCAGTTCATGGAAGGCCACACTCTTCTCACTTCTCGGAGACATTCCATCTCATCTTCGTAAACTGATTGCTTTCATTTCCATTGATGGGACTTCTACAACTATTCTCATTGTTGACAGCAACACAAGAGAGCCGTTATGGAGACCTTTCCTCTACAATGAGAGCTGTCCTGATGCTCTACCGATGGTTAAATCCATTGCTCCTCCAAACCATACAATCTGCTCTGGTTCCTTTACTCTGCACTATTGTTGCACCAAGCAGATTGGCTTTTGTGGCTTCTTCATGGAAAACTCGGAGTGTTTGATTATAATAATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3522

Protein Analysis

109

Amino Acids

12.23

Weight (kDa)

5.8

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46060 AT2G46060 AT2G46060
fragaria_vesca	FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850
malus_domestica	MD01G1067200.v1.1 MD07G1133800.v1.1
prunus_persica	Prupe.2G173600_v2.0.a1 Prupe.2G173600_v2.0.a1 Prupe.2G173600_v2.0.a1 Prupe.2G173600_v2.0.a1 Prupe.2G173600_v2.0.a1
pyrus_communis	pycom01g09620 pycom01g09630 pycom07g13130
rosa_chinensis	RchiOBHm_Chr1g0356801
rosa_laevigata	RLG00000028082
rosa_multiflora	Rmu_sc0000517.1_g000032
rosa_roxburghii	Rroxscaffold_4G00299350
rosa_rugosa	Rorug01G0251200 Rorug01G0251300
rosa_samantha	Rh1AG265600 Rh1BG233100 Rh1CG249000 Rh1DG260600
rosa_wichuraiana	Rw1G023470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	317
AccB7I	CCANNNNNTGG	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	18, 96
AluBI	AGCT	1 cut(s)	174
AluI	AGCT	1 cut(s)	174
Alw26I	GTCTC	2 cut(s)	42, 145
AoxI	GGCC	2 cut(s)	9, 24
AspS9I	GGNCC	1 cut(s)	9
BccI	CCATC	3 cut(s)	64, 89, 187
BceAI	ACGGC	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	42, 145
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	238
BmsI	GCATC	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 96
Bse1I	ACTGG	1 cut(s)	12
Bse3DI	GCAATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	18, 96
BseMI	GCAATG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	12
BseRI	GAGGAG	1 cut(s)	201
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	2 cut(s)	11, 26
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	2 cut(s)	18, 96
BsmAI	GTCTC	2 cut(s)	42, 145
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	11, 26
Bso31I	GGTCTC	1 cut(s)	145
BspANI	GGCC	2 cut(s)	11, 26
BspLI	GGNNCC	1 cut(s)	238
BspTNI	GGTCTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	38
BstMAI	GTCTC	2 cut(s)	42, 145
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	11, 26
Cfr13I	GGNCC	1 cut(s)	9
CviAII	CATG	2 cut(s)	18, 292
CviJI	RGCY	6 cut(s)	11, 26, 142, 174, 276, 285
CviKI_1	RGCY	6 cut(s)	11, 26, 142, 174, 276, 285
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	145
FaeI	CATG	2 cut(s)	21, 295
FaiI	YATR	5 cut(s)	19, 148, 222, 293, 317
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	2 cut(s)	17, 291
HaeIII	GGCC	2 cut(s)	11, 26
Hin1II	CATG	2 cut(s)	21, 295
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
Hpy166II	GTNNAC	2 cut(s)	71, 124
Hpy188I	TCNGA	2 cut(s)	47, 304
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	2 cut(s)	71, 124
HpyAV	CCTTC	1 cut(s)	16
HpyCH4V	TGCA	2 cut(s)	250, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	21, 295
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	3 cut(s)	25, 192, 219
LweI	GCATC	1 cut(s)	172
MboII	GAAGA	3 cut(s)	25, 56, 280
MnlI	CCTC	2 cut(s)	170, 222
MseI	TTAA	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	282
NlaIII	CATG	2 cut(s)	21, 295
NlaIV	GGNNCC	1 cut(s)	238
PflMI	CCANNNNNTGG	1 cut(s)	18
PsiI	TTATAA	1 cut(s)	317
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	198
Sau96I	GGNCC	1 cut(s)	9
SetI	ASST	2 cut(s)	157, 176
SfaNI	GCATC	1 cut(s)	172
SgeI	CNNG	9 cut(s)	24, 30, 56, 147, 191, 246, 277, 304, 313
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TspDTI	ATGAA	3 cut(s)	6, 73, 280
Van91I	CCANNNNNTGG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.