Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003810

Physical Location & Seq

Genomic Coordinates Forward (+)

14721801 .. 14725535

Gene Structure 3735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g13130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

ATGGCTTCGAATTCGATTCTTTGTTCCTCTTCCCATTTACATCTCAGTCTTTTCGTGCTCTTTTTCTGCTTATTCGTCCACTGCTATTCGTACGGCGAACTGGGTCCGTACACCAGCTTCACTGTCTCCAGCTTCAGCTACCCACCGACCACAATCGGACCCTCTGGATTTCGATACATTAGAGTTGAAATGCCACCATGGTTCTCGTCAATGTCGATAGCAATGATTTCGAACGTGGAACTTGCTGCTGGAGACATAGAAAAGGTTCCAAAAATTAAGTTACCGTTGATTTGCTTCCGAGCTGGTAGCCTCCCACTGCCGGATGTTAACACTTCTCTAGTGGATTCAGCAGTTCTAGCTCCCCTTTACAATGGTTCGTATAAGGGAATACAAGCTCTTCAGAGTTCAGAGCAGTGCTATCCTATGCAAAAGAATTTTACAATCAAGTTGACAAATGAGCAGATTTCTCCAGGAGTTTGGTATTTTGGTCTTTTCAATGGAATTGGACCTACAAGGACACAATCAAAGATGATTAATCGCTCACCATCATACACCTTCAGTGCCAATATCACTGTGGAAGGATGTACGACCCTAACCATGTGGGGCCCAGAATGCAATCAGACAATTAACCCACTTTCATGTGCTCTATCTAACAGCTACAGTGCTGCAGACAATTCTTCAGAAGCTGGTTTGTATAACCAAACACTTGAATATGTAATTTCATGTAAAAACAATTTTGGCACTTGTCATGGAGATGGCGAGCCCAAATTCTACTCTTTGGATGTAGTGGGAGTATCGCAAGAGTTGAAAATTTTGGCAAAGGATGTTTGGTTAAATGTAACGTTTTCAAATAACACCAAGAATGTTAGTGATATTAATTTAATGTGTTATGCACGGCATGGTGCAATACCTTCAGAAACTGTGCATGACTATTCCAGTAATATAAACAAATCCCCATTGGTCATTCAATTTCCAAAGGTTGGAAGCTGGTATATTACTATTTTACCTCTCAACGTTTCAAAAGAGCTTGAAGGGAGTCTGGATACTGACACAAAAGTTTGTTATTCCCTGGAATCAAAACTGCTTGAATGTCCGGAGGGCAAGGCTGGAGCAAATTGTACAAGGGAAATATACACCCTTCAGACATCACTGAGGAAAGGTTCAAGCTACTTTGAATACTACTATTTACCCGTCAGTGAAAAAGTGTCTCCTGATTCAGCCAATTTTCCTCTTGATCCTCTTTCAACGAACTCCTCGCATGGTGGACAACCAGAAGAAACATGGACTTACTTTGTCATGGACATTCCGCATGGAGCAGCAGGAGGAAACATGCACATTCGATTAAACTCAGATGAAAAGGTTAACTATGAAGTATATGCTAGATACGGTGGATTACCATCTCTCGCTAGCTGGGACTATTTCTATTCAAACAGGACAAGCAGTAGTGATGGCTCCATGTTTTTTAACTTATATAATTCAAGTGAAGACAAGGTCGATTTTTACATTTTGTACGTTAGAGAAGGAACTTGGAGCTTTGGTCTAAAGCATCTCAACACCACCAGTGATGCTTTGAAAGTTCCGACTAGCATGTCTGTTTCACTTGAAAGATGCCCAAGAAGGTGCTCTTCACATGGAAAATGCGAAACTGCGTTGGATGCCAGTGGATTGACATCATACAGTAAGATACTTCTGCTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3522

Protein Analysis

567

Amino Acids

62.68

Weight (kDa)

5.72

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46060 AT2G46060 AT2G46060
fragaria_vesca	FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850
malus_domestica	MD01G1067200.v1.1 MD07G1133800.v1.1
prunus_persica	Prupe.2G173600_v2.0.a1 Prupe.2G173600_v2.0.a1 Prupe.2G173600_v2.0.a1 Prupe.2G173600_v2.0.a1 Prupe.2G173600_v2.0.a1
pyrus_communis	pycom01g09620 pycom01g09630 pycom07g13130
rosa_chinensis	RchiOBHm_Chr1g0356801
rosa_laevigata	RLG00000028082
rosa_multiflora	Rmu_sc0000517.1_g000032
rosa_roxburghii	Rroxscaffold_4G00299350
rosa_rugosa	Rorug01G0251200 Rorug01G0251300
rosa_samantha	Rh1AG265600 Rh1BG233100 Rh1CG249000 Rh1DG260600
rosa_wichuraiana	Rw1G023470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1588
AccB7I	CCANNNNNTGG	1 cut(s)	980
AccIII	TCCGGA	1 cut(s)	1093
AciI	CCGC	1 cut(s)	1307
AclI	AACGTT	2 cut(s)	842, 1014
AclWI	GGATC	1 cut(s)	1229
AcsI	RAATTY	4 cut(s)	10, 433, 767, 810
AcuI	CTGAAG	6 cut(s)	118, 383, 541, 663, 897, 1124
AfaI	GTAC	5 cut(s)	92, 110, 586, 1120, 1511
AfiI	CCNNNNNNNGG	2 cut(s)	319, 980
AjnI	CCWGG	2 cut(s)	469, 1068
Alw21I	GWGCWC	3 cut(s)	60, 646, 1625
Alw26I	GTCTC	3 cut(s)	130, 246, 1212
AlwI	GGATC	1 cut(s)	1229
AlwNI	CAGNNNCTG	2 cut(s)	686, 920
Aor13HI	TCCGGA	1 cut(s)	1093
AoxI	GGCC	1 cut(s)	604
ApaI	GGGCCC	1 cut(s)	608
ApeKI	GCWGC	3 cut(s)	245, 665, 1316
ApoI	RAATTY	4 cut(s)	10, 433, 767, 810
AseI	ATTAAT	2 cut(s)	534, 876
Asp700I	GAANNNNTTC	1 cut(s)	264
AspS9I	GGNCC	5 cut(s)	104, 158, 506, 604, 605
AsuHPI	GGTGA	1 cut(s)	534
AsuII	TTCGAA	2 cut(s)	8, 230
AsuNHI	GCTAGC	1 cut(s)	1406
AvaII	GGWCC	3 cut(s)	104, 158, 506
BaeGI	GKGCMC	1 cut(s)	608
BanII	GRGCYC	2 cut(s)	608, 765
BarI	GAAGNNNNNNTAC	2 cut(s)	101, 133
BbsI	GAAGAC	1 cut(s)	1491
Bbv12I	GWGCWC	3 cut(s)	60, 646, 1625
BbvI	GCAGC	3 cut(s)	232, 652, 1328
BccI	CCATC	4 cut(s)	553, 749, 1405, 1442
BceAI	ACGGC	2 cut(s)	109, 911
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BciT130I	CCWGG	2 cut(s)	471, 1070
BciVI	GTATCC	1 cut(s)	1036
BcoDI	GTCTC	3 cut(s)	130, 246, 1212
BfaI	CTAG	5 cut(s)	338, 356, 1380, 1407, 1584
BfmI	CTRYAG	2 cut(s)	658, 666
BfuI	GTATCC	1 cut(s)	1036
BisI	GCNGC	3 cut(s)	246, 666, 1317
BlsI	GCNGC	3 cut(s)	247, 667, 1318
Bme1390I	CCNGG	2 cut(s)	471, 1070
Bme18I	GGWCC	3 cut(s)	104, 158, 506
BmgT120I	GGNCC	5 cut(s)	104, 158, 506, 604, 605
BmiI	GGNNCC	6 cut(s)	105, 160, 267, 605, 606, 1453
BmrFI	CCNGG	2 cut(s)	471, 1070
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	4 cut(s)	1555, 1555, 1598, 1645
BmtI	GCTAGC	1 cut(s)	1410
BmuI	ACTGGG	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	1491
BpmI	CTGGAG	4 cut(s)	112, 270, 453, 1128
Bpu14I	TTCGAA	2 cut(s)	8, 230
BsaBI	GATNNNNATC	2 cut(s)	1396, 1669
BsaJI	CCNNGG	2 cut(s)	197, 1068
BsaWI	WCCGGW	1 cut(s)	1093
BsaXI	ACNNNNNCTCC	2 cut(s)	1522, 1552
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 980
Bse1I	ACTGG	4 cut(s)	105, 936, 1560, 1659
Bse3DI	GCAATG	1 cut(s)	228
Bse8I	GATNNNNATC	2 cut(s)	1396, 1669
BseAI	TCCGGA	1 cut(s)	1093
BseBI	CCWGG	2 cut(s)	471, 1070
BseDI	CCNNGG	2 cut(s)	197, 1068
BseGI	GGATG	5 cut(s)	328, 587, 787, 829, 1660
BseJI	GATNNNNATC	2 cut(s)	1396, 1669
BseLI	CCNNNNNNNGG	2 cut(s)	319, 980
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	3 cut(s)	58, 1142, 1362
BseNI	ACTGG	4 cut(s)	105, 936, 1560, 1659
BseRI	GAGGAG	1 cut(s)	1243
BseSI	GKGCMC	1 cut(s)	608
BseXI	GCAGC	3 cut(s)	232, 652, 1328
BseYI	CCCAGC	1 cut(s)	1410
BshFI	GGCC	1 cut(s)	606
BsiHKAI	GWGCWC	3 cut(s)	60, 646, 1625
BsiSI	CCGG	2 cut(s)	320, 1094
BsiWI	CGTACG	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	1427
BslI	CCNNNNNNNGG	2 cut(s)	319, 980
BsmAI	GTCTC	3 cut(s)	130, 246, 1212
BsmFI	GGGAC	1 cut(s)	1427
BsmI	GAATGC	1 cut(s)	617
BsnI	GGCC	1 cut(s)	606
Bsp119I	TTCGAA	2 cut(s)	8, 230
Bsp120I	GGGCCC	1 cut(s)	604
Bsp1286I	GDGCHC	5 cut(s)	60, 608, 646, 765, 1625
Bsp13I	TCCGGA	1 cut(s)	1093
Bsp1407I	TGTACA	1 cut(s)	1118
Bsp143I	GATC	1 cut(s)	1234
Bsp19I	CCATGG	1 cut(s)	197
BspACI	CCGC	1 cut(s)	1307
BspANI	GGCC	1 cut(s)	606
BspCNI	CTCAG	3 cut(s)	57, 1143, 1361
BspEI	TCCGGA	1 cut(s)	1093
BspLI	GGNNCC	6 cut(s)	105, 160, 267, 605, 606, 1453
BspMAI	CTGCAG	1 cut(s)	670
BspOI	GCTAGC	1 cut(s)	1410
BspPI	GGATC	1 cut(s)	1229
BspQI	GCTCTTC	2 cut(s)	402, 1630
BspT104I	TTCGAA	2 cut(s)	8, 230
BsrDI	GCAATG	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	1118
BsrI	ACTGG	4 cut(s)	105, 936, 1560, 1659
BssECI	CCNNGG	2 cut(s)	197, 1068
BssMI	GATC	1 cut(s)	1234
BssT1I	CCWWGG	1 cut(s)	197
Bst2UI	CCWGG	2 cut(s)	471, 1070
Bst4CI	ACNGT	7 cut(s)	124, 285, 574, 662, 922, 1388, 1679
Bst6I	CTCTTC	3 cut(s)	34, 402, 1630
BstAUI	TGTACA	1 cut(s)	1118
BstBI	TTCGAA	2 cut(s)	8, 230
BstC8I	GCNNGC	2 cut(s)	761, 1408
BstDEI	CTNAG	3 cut(s)	44, 1151, 1348
BstDSI	CCRYGG	1 cut(s)	197
BstF5I	GGATG	5 cut(s)	328, 587, 787, 829, 1660
BstKTI	GATC	1 cut(s)	1237
BstMAI	GTCTC	3 cut(s)	130, 246, 1212
BstMBI	GATC	1 cut(s)	1234
BstMWI	GCNNNNNNNGC	3 cut(s)	356, 612, 1655
BstNI	CCWGG	2 cut(s)	471, 1070
BstNSI	RCATGY	2 cut(s)	1333, 1591
BstSCI	CCNGG	2 cut(s)	469, 1068
BstSFI	CTRYAG	2 cut(s)	658, 666
BstSLI	GKGCMC	1 cut(s)	608
BstV1I	GCAGC	3 cut(s)	232, 652, 1328
BstV2I	GAAGAC	1 cut(s)	1491
BstXI	CCANNNNNNTGG	1 cut(s)	477
BsuI	GTATCC	1 cut(s)	1036
BsuRI	GGCC	1 cut(s)	606
BtgI	CCRYGG	1 cut(s)	197
BtsCI	GGATG	5 cut(s)	328, 587, 787, 829, 1660
BtsI	GCAGTG	3 cut(s)	79, 314, 419
Cac8I	GCNNGC	2 cut(s)	761, 1408
CaiI	CAGNNNCTG	2 cut(s)	686, 920
Cfr13I	GGNCC	5 cut(s)	104, 158, 506, 604, 605
Csp6I	GTAC	5 cut(s)	91, 109, 585, 1119, 1510
CviQI	GTAC	5 cut(s)	91, 109, 585, 1119, 1510
DdeI	CTNAG	3 cut(s)	44, 1151, 1348
DpnI	GATC	1 cut(s)	1236
DpnII	GATC	1 cut(s)	1234
DrdI	GACNNNNNNGTC	1 cut(s)	1588
DseDI	GACNNNNNNGTC	1 cut(s)	1588
Eam1104I	CTCTTC	3 cut(s)	34, 402, 1630
EarI	CTCTTC	3 cut(s)	34, 402, 1630
Eco130I	CCWWGG	1 cut(s)	197
Eco24I	GRGCYC	2 cut(s)	608, 765
Eco47I	GGWCC	3 cut(s)	104, 158, 506
Eco57I	CTGAAG	6 cut(s)	118, 383, 541, 663, 897, 1124
EcoO109I	RGGNCCY	1 cut(s)	604
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	2 cut(s)	469, 1068
EcoT14I	CCWWGG	1 cut(s)	197
EcoT38I	GRGCYC	2 cut(s)	608, 765
ErhI	CCWWGG	1 cut(s)	197
FalI	AAGNNNNNCTT	2 cut(s)	1609, 1641
FaqI	GGGAC	1 cut(s)	1427
Fnu4HI	GCNGC	3 cut(s)	246, 666, 1317
FokI	GGATG	5 cut(s)	335, 594, 794, 836, 1667
FriOI	GRGCYC	2 cut(s)	608, 765
Fsp4HI	GCNGC	3 cut(s)	246, 666, 1317
FspBI	CTAG	5 cut(s)	338, 356, 1380, 1407, 1584
GluI	GCNGC	3 cut(s)	246, 666, 1317
GsaI	CCCAGC	1 cut(s)	1414
GsuI	CTGGAG	4 cut(s)	112, 270, 453, 1128
HaeIII	GGCC	1 cut(s)	606
HapII	CCGG	2 cut(s)	320, 1094
HincII	GTYRAC	3 cut(s)	328, 450, 1363
HindII	GTYRAC	3 cut(s)	328, 450, 1363
HinfI	GANTC	5 cut(s)	16, 344, 1036, 1073, 1214
HpaI	GTTAAC	2 cut(s)	328, 1363
HpaII	CCGG	2 cut(s)	320, 1094
HphI	GGTGA	1 cut(s)	534
Hpy166II	GTNNAC	6 cut(s)	79, 111, 328, 450, 1265, 1363
Hpy188III	TCNNGA	5 cut(s)	165, 1040, 1094, 1211, 1232
Hpy8I	GTNNAC	6 cut(s)	79, 111, 328, 450, 1265, 1363
HpyAV	CCTTC	7 cut(s)	565, 572, 921, 1025, 1148, 1514, 1611
HpyCH4III	ACNGT	7 cut(s)	124, 285, 574, 662, 922, 1388, 1679
HpyCH4IV	ACGT	4 cut(s)	234, 842, 1014, 1512
HpyCH4V	TGCA	7 cut(s)	427, 615, 668, 893, 905, 925, 1333
HpyF10VI	GCNNNNNNNGC	3 cut(s)	356, 612, 1655
HpyF3I	CTNAG	3 cut(s)	44, 1151, 1348
HpySE526I	ACGT	4 cut(s)	234, 842, 1014, 1512
Kpn2I	TCCGGA	1 cut(s)	1093
KspAI	GTTAAC	2 cut(s)	328, 1363
Kzo9I	GATC	1 cut(s)	1234
LguI	GCTCTTC	2 cut(s)	402, 1630
LmnI	GCTCC	5 cut(s)	364, 1109, 1313, 1457, 1530
Lsp1109I	GCAGC	3 cut(s)	232, 652, 1328
LweI	GCATC	4 cut(s)	1555, 1555, 1598, 1645
MaeI	CTAG	5 cut(s)	338, 356, 1380, 1407, 1584
MaeII	ACGT	4 cut(s)	234, 842, 1014, 1512
MaeIII	GTNAC	2 cut(s)	279, 838
MalI	GATC	1 cut(s)	1236
MboI	GATC	1 cut(s)	1234
MboII	GAAGA	6 cut(s)	21, 389, 669, 1286, 1496, 1617
MhlI	GDGCHC	5 cut(s)	60, 608, 646, 765, 1625
MlyI	GAGTC	1 cut(s)	1045
MmeI	TCCRAC	3 cut(s)	961, 1604, 1632
MroI	TCCGGA	1 cut(s)	1093
MroXI	GAANNNNTTC	1 cut(s)	264
MslI	CAYNNNNRTG	2 cut(s)	637, 753
MspI	CCGG	2 cut(s)	320, 1094
MspR9I	CCNGG	2 cut(s)	471, 1070
Mva1269I	GAATGC	1 cut(s)	617
MvaI	CCWGG	2 cut(s)	471, 1070
MwoI	GCNNNNNNNGC	3 cut(s)	356, 612, 1655
NcoI	CCATGG	1 cut(s)	197
NdeII	GATC	1 cut(s)	1234
NheI	GCTAGC	1 cut(s)	1406
NlaIV	GGNNCC	6 cut(s)	105, 160, 267, 605, 606, 1453
NspI	RCATGY	2 cut(s)	1333, 1591
NspV	TTCGAA	2 cut(s)	8, 230
PciSI	GCTCTTC	2 cut(s)	402, 1630
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PctI	GAATGC	1 cut(s)	617
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	4 cut(s)	16, 344, 1073, 1214
Pfl23II	CGTACG	1 cut(s)	90
PflFI	GACNNNGTC	1 cut(s)	1490
PflMI	CCANNNNNTGG	1 cut(s)	980
PfoI	TCCNGGA	1 cut(s)	469
PkrI	GCNGC	3 cut(s)	247, 667, 1318
PleI	GAGTC	1 cut(s)	1044
PpsI	GAGTC	1 cut(s)	1044
PshBI	ATTAAT	2 cut(s)	534, 876
Psp1406I	AACGTT	2 cut(s)	842, 1014
Psp6I	CCWGG	2 cut(s)	469, 1068
PspFI	CCCAGC	1 cut(s)	1410
PspGI	CCWGG	2 cut(s)	469, 1068
PspLI	CGTACG	1 cut(s)	90
PspN4I	GGNNCC	6 cut(s)	105, 160, 267, 605, 606, 1453
PspOMI	GGGCCC	1 cut(s)	604
PspPI	GGNCC	5 cut(s)	104, 158, 506, 604, 605
PstI	CTGCAG	1 cut(s)	670
PstNI	CAGNNNCTG	2 cut(s)	686, 920
PsyI	GACNNNGTC	1 cut(s)	1490
RsaI	GTAC	5 cut(s)	92, 110, 586, 1120, 1511
RsaNI	GTAC	5 cut(s)	91, 109, 585, 1119, 1510
RseI	CAYNNNNRTG	2 cut(s)	637, 753
SapI	GCTCTTC	2 cut(s)	402, 1630
SatI	GCNGC	3 cut(s)	246, 666, 1317
Sau3AI	GATC	1 cut(s)	1234
Sau96I	GGNCC	5 cut(s)	104, 158, 506, 604, 605
SchI	GAGTC	1 cut(s)	1045
ScrFI	CCNGG	2 cut(s)	471, 1070
SduI	GDGCHC	5 cut(s)	60, 608, 646, 765, 1625
SfaNI	GCATC	4 cut(s)	1555, 1555, 1598, 1645
SfcI	CTRYAG	2 cut(s)	658, 666
SfuI	TTCGAA	2 cut(s)	8, 230
SinI	GGWCC	3 cut(s)	104, 158, 506
SmiMI	CAYNNNNRTG	2 cut(s)	637, 753
SsiI	CCGC	1 cut(s)	1307
SspMI	CTAG	5 cut(s)	338, 356, 1380, 1407, 1584
StyD4I	CCNGG	2 cut(s)	469, 1068
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	7 cut(s)	124, 285, 574, 662, 922, 1388, 1679
TaiI	ACGT	4 cut(s)	237, 845, 1017, 1515
TaqI	TCGA	7 cut(s)	8, 14, 172, 215, 230, 1339, 1494
TatI	WGTACW	1 cut(s)	1118
TfiI	GAWTC	4 cut(s)	16, 344, 1073, 1214
TseI	GCWGC	3 cut(s)	245, 665, 1316
TspDTI	ATGAA	4 cut(s)	627, 711, 1368, 1383
TspGWI	ACGGA	1 cut(s)	96
Tth111I	GACNNNGTC	1 cut(s)	1490
Van91I	CCANNNNNTGG	1 cut(s)	980
VpaK11BI	GGWCC	3 cut(s)	104, 158, 506
VspI	ATTAAT	2 cut(s)	534, 876
XapI	RAATTY	4 cut(s)	10, 433, 767, 810
XceI	RCATGY	2 cut(s)	1333, 1591
XcmI	CCANNNNNNNNNTGG	2 cut(s)	571, 1278
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	5 cut(s)	338, 356, 1380, 1407, 1584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.