Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003810

Physical Location & Seq

Genomic Coordinates Reverse (-)

35926146 .. 35927256

Gene Structure 1111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0251200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTCTGAGATTTTGGGACAGGGCATTTTTGTTGTTAATGGAGATAAATGGAGGCAGCAGAGGAAGCTTGCCAGCTTTGAGTTCTCAACAAGGAATCTTAGAGATTTCAGCTGTTCTGTATTTAGAGGAAATGCTGCCAAACTTGTTAGAGTTGTTTTTGAGTTTTTGGATTCCAAAAGGGTCTTTGATATGCAGGATTTGCTTATGAGATGTACCCTGGATTCCATATTCAAAGTTGGCTGCTCTGATCCATTCTGGAAGTTGAAAAGATTTCTCAATACTGGTTCTGAGGCCATTCTTAAACAGTATGTCAAAGTCACCCATGATTTTGTGCACCAACTTATCAGGAGAAAGAGGGAACTTCTAGCTGGCAAGAAAGATGGTGCAAGTGACAAGGAGGACATACTATCAAGGTTTATGGAAAGTGAGAAGGATCAAGAGCAAATGAATGACAAATATCTAGGTGATATAATTCTGAATTTTATGATAGCTGGCAAAGATACAAGTGCAAATACACTGTCATGGTTCTTCTACATGCTCAGCAAGAACCCTCTAATACAGGAAAAAGTTTCACAAGAAGTGAAGGATGTTGTCTGTATGAAACACAACACTGACATTGATGAATTTGTGACGAACATAACTGATGCAACTCTTGAAAAGATGCAGTATCTTCATGCCACACTAACAGAGACCTTGAGGCTCTACCCTGCAGTTCCTGTGAATGGGAGGTTTGCAGAGATAGATGACATTCTTCCTGATGGCTTTAGAGTGAAAAAAGGAGACAAAATAGCTTACATGGCCTATGCCATGGGGAGAATGCCTTACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3522

Protein Analysis

276

Amino Acids

31.98

Weight (kDa)

8.52

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	5 - 79	6.4e-06	Cytochrome P450
p450	PF00067	83 - 274	1.2e-34	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46060 AT2G46060 AT2G46060
fragaria_vesca	FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850 FvH4_7g14850
malus_domestica	MD01G1067200.v1.1 MD07G1133800.v1.1
prunus_persica	Prupe.2G173600_v2.0.a1 Prupe.2G173600_v2.0.a1 Prupe.2G173600_v2.0.a1 Prupe.2G173600_v2.0.a1 Prupe.2G173600_v2.0.a1
pyrus_communis	pycom01g09620 pycom01g09630 pycom07g13130
rosa_chinensis	RchiOBHm_Chr1g0356801
rosa_laevigata	RLG00000028082
rosa_multiflora	Rmu_sc0000517.1_g000032
rosa_roxburghii	Rroxscaffold_4G00299350
rosa_rugosa	Rorug01G0251200 Rorug01G0251300
rosa_samantha	Rh1AG265600 Rh1BG233100 Rh1CG249000 Rh1DG260600
rosa_wichuraiana	Rw1G023470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	242, 441
AcsI	RAATTY	2 cut(s)	478, 623
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	722
AgsI	TTSAA	3 cut(s)	232, 265, 656
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	6 cut(s)	67, 75, 111, 368, 491, 791
AluI	AGCT	6 cut(s)	67, 75, 111, 368, 491, 791
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	2 cut(s)	683, 774
Alw44I	GTGCAC	1 cut(s)	332
AlwI	GGATC	2 cut(s)	242, 441
AlwNI	CAGNNNCTG	1 cut(s)	716
AoxI	GGCC	2 cut(s)	291, 798
ApaLI	GTGCAC	1 cut(s)	332
ApeKI	GCWGC	3 cut(s)	55, 134, 240
ApoI	RAATTY	2 cut(s)	478, 623
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
AsuHPI	GGTGA	2 cut(s)	310, 476
BaeGI	GKGCMC	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	3 cut(s)	67, 121, 227
BccI	CCATC	2 cut(s)	374, 752
BciT130I	CCWGG	1 cut(s)	218
BcoDI	GTCTC	2 cut(s)	683, 774
BfaI	CTAG	2 cut(s)	365, 461
BfmI	CTRYAG	1 cut(s)	708
BisI	GCNGC	3 cut(s)	56, 135, 241
BlpI	GCTNAGC	1 cut(s)	539
BlsI	GCNGC	3 cut(s)	57, 136, 242
Bme1390I	CCNGG	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	2 cut(s)	634, 651
Bpu1102I	GCTNAGC	1 cut(s)	539
BpuEI	CTTGAG	1 cut(s)	715
BsaI	GGTCTC	1 cut(s)	683
BsaJI	CCNNGG	2 cut(s)	216, 807
Bsc4I	CCNNNNNNNGG	1 cut(s)	722
Bse1I	ACTGG	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	216, 807
BseGI	GGATG	1 cut(s)	592
BseLI	CCNNNNNNNGG	1 cut(s)	722
BseMII	CTCAG	2 cut(s)	279, 553
BseNI	ACTGG	1 cut(s)	286
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	3 cut(s)	67, 121, 227
BshFI	GGCC	2 cut(s)	293, 800
BsiHKAI	GWGCWC	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	722
BsmAI	GTCTC	2 cut(s)	683, 774
BsmFI	GGGAC	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	822
BsnI	GGCC	2 cut(s)	293, 800
Bso31I	GGTCTC	1 cut(s)	683
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	2 cut(s)	247, 433
Bsp1720I	GCTNAGC	1 cut(s)	539
Bsp19I	CCATGG	1 cut(s)	807
BspANI	GGCC	2 cut(s)	293, 800
BspCNI	CTCAG	2 cut(s)	280, 552
BspMAI	CTGCAG	1 cut(s)	712
BspPI	GGATC	2 cut(s)	242, 441
BspTNI	GGTCTC	1 cut(s)	683
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	2 cut(s)	216, 807
BssMI	GATC	2 cut(s)	247, 433
BssT1I	CCWWGG	1 cut(s)	807
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	306, 519
BstAPI	GCANNNNNTGC	1 cut(s)	199
BstC8I	GCNNGC	4 cut(s)	69, 73, 370, 493
BstDEI	CTNAG	4 cut(s)	6, 98, 288, 539
BstDSI	CCRYGG	1 cut(s)	807
BstF5I	GGATG	1 cut(s)	592
BstKTI	GATC	2 cut(s)	250, 436
BstMAI	GTCTC	2 cut(s)	683, 774
BstMBI	GATC	2 cut(s)	247, 433
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 199, 797
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	538
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	1 cut(s)	708
BstSLI	GKGCMC	1 cut(s)	336
BstV1I	GCAGC	3 cut(s)	67, 121, 227
BsuRI	GGCC	2 cut(s)	293, 800
BtgI	CCRYGG	1 cut(s)	807
BtsCI	GGATG	1 cut(s)	592
BtsIMutI	CAGTG	2 cut(s)	515, 609
Cac8I	GCNNGC	4 cut(s)	69, 73, 370, 493
CaiI	CAGNNNCTG	1 cut(s)	716
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	6 cut(s)	323, 522, 535, 674, 796, 808
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	4 cut(s)	6, 98, 288, 539
DpnI	GATC	2 cut(s)	249, 435
DpnII	GATC	2 cut(s)	247, 433
Eco130I	CCWWGG	1 cut(s)	807
Eco31I	GGTCTC	1 cut(s)	683
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	807
ErhI	CCWWGG	1 cut(s)	807
FaeI	CATG	6 cut(s)	326, 525, 538, 677, 799, 811
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	6 cut(s)	322, 521, 534, 673, 795, 807
Fnu4HI	GCNGC	3 cut(s)	56, 135, 241
FokI	GGATG	1 cut(s)	599
Fsp4HI	GCNGC	3 cut(s)	56, 135, 241
FspBI	CTAG	2 cut(s)	365, 461
GluI	GCNGC	3 cut(s)	56, 135, 241
HaeIII	GGCC	2 cut(s)	293, 800
Hin1II	CATG	6 cut(s)	326, 525, 538, 677, 799, 811
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	3 cut(s)	94, 170, 221
HphI	GGTGA	2 cut(s)	310, 476
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	7, 247, 289, 477
Hpy188III	TCNNGA	5 cut(s)	256, 346, 437, 653, 755
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	2 cut(s)	424, 577
HpyCH4III	ACNGT	2 cut(s)	306, 519
HpyCH4V	TGCA	8 cut(s)	193, 334, 386, 509, 647, 664, 710, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 199, 797
HpyF3I	CTNAG	4 cut(s)	6, 98, 288, 539
Hsp92II	CATG	6 cut(s)	326, 525, 538, 677, 799, 811
Kzo9I	GATC	2 cut(s)	247, 433
Lsp1109I	GCAGC	3 cut(s)	67, 121, 227
LweI	GCATC	2 cut(s)	634, 651
MaeI	CTAG	2 cut(s)	365, 461
MaeIII	GTNAC	3 cut(s)	316, 389, 628
MalI	GATC	2 cut(s)	249, 435
MboI	GATC	2 cut(s)	247, 433
MboII	GAAGA	3 cut(s)	520, 662, 743
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	3 cut(s)	471, 478, 623
MnlI	CCTC	9 cut(s)	45, 54, 119, 283, 348, 391, 561, 690, 720
MseI	TTAA	2 cut(s)	36, 300
MslI	CAYNNNNRTG	1 cut(s)	520
MspA1I	CMGCKG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	822
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	3 cut(s)	64, 199, 797
NcoI	CCATGG	1 cut(s)	807
NdeII	GATC	2 cut(s)	247, 433
NlaIII	CATG	6 cut(s)	326, 525, 538, 677, 799, 811
NmuCI	GTSAC	3 cut(s)	316, 389, 628
NspI	RCATGY	1 cut(s)	538
PctI	GAATGC	1 cut(s)	822
PfeI	GAWTC	3 cut(s)	94, 170, 221
PkrI	GCNGC	3 cut(s)	57, 136, 242
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PstI	CTGCAG	1 cut(s)	712
PstNI	CAGNNNCTG	1 cut(s)	716
PvuII	CAGCTG	1 cut(s)	111
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
RseI	CAYNNNNRTG	1 cut(s)	520
SaqAI	TTAA	2 cut(s)	36, 300
SatI	GCNGC	3 cut(s)	56, 135, 241
Sau3AI	GATC	2 cut(s)	247, 433
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	336
SfaNI	GCATC	2 cut(s)	634, 651
SfcI	CTRYAG	1 cut(s)	708
SmiMI	CAYNNNNRTG	1 cut(s)	520
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
Sse9I	AATT	3 cut(s)	471, 478, 623
SspMI	CTAG	2 cut(s)	365, 461
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	807
TaaI	ACNGT	2 cut(s)	306, 519
TasI	AATT	3 cut(s)	471, 478, 623
TfiI	GAWTC	3 cut(s)	94, 170, 221
Tru1I	TTAA	2 cut(s)	36, 300
Tru9I	TTAA	2 cut(s)	36, 300
TscAI	CASTG	2 cut(s)	522, 616
TseFI	GTSAC	3 cut(s)	316, 389, 628
TseI	GCWGC	3 cut(s)	55, 134, 240
Tsp45I	GTSAC	3 cut(s)	316, 389, 628
TspDTI	ATGAA	4 cut(s)	461, 614, 636, 662
TspRI	CASTG	2 cut(s)	522, 616
VneI	GTGCAC	1 cut(s)	332
XapI	RAATTY	2 cut(s)	478, 623
XceI	RCATGY	1 cut(s)	538
XspI	CTAG	2 cut(s)	365, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.