Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0013339

Physical Location & Seq

Genomic Coordinates Forward (+)

11080089 .. 11084071

Gene Structure 3983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3720 bp

ATGATGCCATTATACGGATACATGGATTCAAACCCCTACCAAAGAAATCAAACTTTCTCTTTCCCTCAGTATCATAATCCGGATTTCGGGTCCAATCCGTCCATGGTATGGGAGCCTTGGCCCTATGGCGGAAACTATGGCTACCCAATGCCTTGCCATTCTTGCTGTAACCATAATCTCAGACCCTCTTATCCTCATCCTTCAATGCCATCACCGCAACACCTTTATGGGGGTTATCCTGTTCCGCATCCCGAGGCTTACCCTGTTCCCTATGTGCCGCCGCCTCCTCATTATTCCATGGAGATTCCTAAATATGAGTATGATAAGATGGTGCCTCGAAATTATCACTGCTGTGGGTGTCCTAATCATGTTTGCCAGCAGAATATAGATAAGGGTGTGAAGATTGAAGAACAAGGATCGGATGTTGTTGACAAGAAGGCAGATTTGGTTCCGGTTCATATGAACAACAACCATTATCCAACTTTGTGGTTTCCACCGGTTTCCATGAATGGTAGAGAGCAAAGCAAGGTTTCTGAACCGGAGGCCGTAGAGGAAGCAAAAATTCCAACTGATTCTAAGCCTCCAGAGGGTTTGAAGTCTCAGGGAGATCAAAGGCATATTTGGTTCCCTTTTGATCTGAATCACATTGGGGCTTCGATGCAAGGAGGAAATAGAGATCCACGTCAAGAACAGCAGGTGGAGGATAAAAAGAAGGAATTCCCATTTCCAATTTTCTGGATGCCACCTTATCAGGAGGCTGGAAAGAAGGACAAGGATGTGAATGCTTCTCGTGATCACCAGACCGAGGATGAAAAGAAGCAAATCCCATTTCCATTCTTCTTGTTTCCTTACGGAAACAAGCAGGAGGAAGTTCAAAAGGAGGGCAACAGGGAGGTGAATTCTGCACCGAAGGTTGTTCCAATGAACAGTACTGAGGGTGGTGTCACAAAGGAGGCTGGTACAAATGAAGAGAAACCTGCTGGTCAGGGTGCTGAGGAGAGGAAGGAAAACACTGCTAACGTGAAAAGCATAGTTGTGAAGCAAATGGATCCACATAAGGAGGAAAAGAACTCTGAAGACGAGGAGAGAAGAGAAAGGAGTGTCCCTGTGAAACAAGTGGAAGAGAACGTGGGGAACAAACCTTCTGGTACGAGTGTTAAGAGACAGTCCTCTTCCCCTAAAAAGTCATCTGAGCTACCTCCCGTCTGTCTGAGAGTTGATCCATTGCCGAGGAAGAAGAAGGCCAATGGCAGTTCACGGTCTCCTAGTCCTCCTGCTCAAAAAGGACACAAAAAAGAAGTGGAGCCATCCATAAAGGAGAAGGCTACAGAGGTGGTGGATAGGACAATCAGCGAGAACAAAGATCCGATGCATGCATCCAAGATTCCTACTAATTCTAAAGAGGATGTTTCTAGGAATTCAACTGTTTGGGAATCTGAGAAGGATGGAGATAGATGTCAGACCAACATGGATGAAGAAGCACAAAAGGTAGCAGATGCAAAATCTGAGGAGACTAATAAGCCTACGGAGGCAACCAAATCAGTTGCTGATGGAAAACTTGAGAGGACATTGTCAGATATAGAGGCAGCTGTGCTTATTCAATCTGCCTTTCGTGGGTTTGAGGTCAGGAGGTGGGAACCATTGAAGAAACTAAAGCAAATAGCTGACATTCGTGAGCAGGTTGCTGATATTCGCAATCGTATCTCCACTTTGGAGACTTCTGATCTCCAGAAAGATGACAAGCAGAGAGTAATAATTGGGGAGACAATCATGAGACTCCTCCTCAAGTTGGATACCATTCAGGGTTTGCTTCCAAGCCTCAGAGACATTAGAAGATCCTTGGCAAGGGAGCTCGTAGTTCTGCAGGAAAAGCTCGACGAGTTTAACACTAAGAAGTTTCAAAATCCGACACAGGAGGTATCCACTGTTGAGCATATGAAAGAGCTCGGTGAGAACACCAACAACAGTAACTGCATGCTAGAGCAGCAAAGAGAGGATGTGACTGGACTTGGTGAAGGATTGCCTGATGGTGTCAGTGATAGCAGTCATAATGGTACAGACCATTGTCAAGGGGAAGTGCTTCAGAATGTTGAACCTGAGCCCGGTTTGAGAGCCGAGGAACCAGGCCATTGTAATCATAGAGAGTTGCACGCCCCAGCAGAGGATGGTGATCAAGAGCAACAGGTGGAAAGTTGCTTAAAGTCTGAAGATAATGGTTCTGCGCCCATTGTGGAAACAAAAGATGATGTGGTTGGTGAACAGTCTAATGGAAATATGGCGGTGGGAGATGCAGAAATGAAGAATGGTTTTACTCGGCCTGGGCAATGCAGTGAAGCATCATCTCTTGTAGAAGGAAACCATACTCTGACAGGAAACTCTTCCGAAGCTGTTAATATAAACGTAGAGACAACAGAGCCTGGAGAGTTGCCTCGAGGAGTAACTGATGACGAACCTGCCATTTTGGAGCCTGGAAAGGATGAACAAGTGGAAGTGTTGCCGAATGTGACTCCACCAAATGCTTGTTCCTGTGTGATGGAAAAGGACTTAGAGATGCAAGAGCTAGCAGAACTGTCACGGGGCATGATTGATGAGCACAATGCACTTACCGAATCTACCATTTTGGAGCCTGGCATGATTGATGAGCACAATGCACTTAACAAATCTACCATTTTGGAGCCTGAAATCGTTGAACAAGTAGAACTGTCGCCAGATGTGCCTTCATCAAATGCTTGTGCTTATGTGACAGAAAAGGAAGCAGAGATGCAAGAACTCGCAGAACTCCCACCGGGCATGACTGATGAGCACAATGCACTTAATGAGTCCAGGGAAATTGAAGAAGTCGGAGTAGTGAAGGAAGATGATTCCCTACAAAGTGGAGGGGAACATCATGTGGCATTTGATGTAACTTCACAACCAGATGGAACTTCAAATACGGATCAATTAGAGCAACGACGAGAGGGAGCAGTGGAGGAGCAACCTATTGTCCGTTTAGAGCAGCAGGTAGAGATTGGATCTCAAGAGGATGAAGGACGCCCGTCAGATTCAGTGCTTGATTTAGAGGTAGAGCTCCAGCCGCAAGAACAAGTCCGCAAAGATGATCATCTTCCACTGGCCTTTGAGTCGATTGAAGCCCAAGCACTGAGCTTACCTGTTCAGACCGAAGCTCATGGTGTTGTGCATGAAGATGGACCCTTGGACATAATTCATGATCATCATTCGGGCCAGCCTATCGAGGATGAAGTGCCAATTGAGAGAGGTACAAAGGACTCTGAGCACCTGCGAGCAGAAACAGTTATAGAGGATATAAAGATGCAGGAGAGCAACCTCGAATGTGAGGACAAGAAGAATGCACTGCCAAATGTGGCTGAAACTGTCGCGGAGGACATCTTCAGTGAGACACTGTCCACTCCGGTGCAGAAGAGTGAATCATTGCCTGAGAAACAAGTTGCGATCGAGGCATCCTCCATTGATGGAGATGTCACGGAATTCGAAAGTGGTAGAAAGTTGATTGAAGAGAACGAGAAACTAAGGGCAATGATGCAGAAGTTCATGGAAGCCGGAAACGAACAGCTACAAGCTATATCGAACCTGACTGGCAGAGTGAAAGACCTGGAGAAAAAGTTGGCTAGGAAGAAGAAAGTAAGGGGTAGAAGGTTACCTTCTCGTGCCAGACCATCAAACAATCGTTCCAAGGACATGGATGCTGGTGTTGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005911 GO:0006457 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009791 GO:0009814 GO:0009817 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010035 GO:0010228 GO:0010506 GO:0010508 GO:0010941 GO:0010942 GO:0012502 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0043067 GO:0043068 GO:0043207 GO:0044237 GO:0044248 GO:0045087 GO:0046677 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0061919 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG IQ

Protein Analysis

1240

Amino Acids

138.43

Weight (kDa)

4.85

Isoelectric Point (pI)

61.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	554 - 627	3.3e-10	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46240
fragaria_vesca	FvH4_7g15690 FvH4_7g15690
malus_domestica	MD01G1073600.v1.1
prunus_persica	Prupe.2G181700_v2.0.a1
pyrus_communis	pycom01g10280
rosa_chinensis	RchiOBHm_Chr1g0358421
rosa_laevigata	RLG00000027961
rosa_multiflora	Rmu_sc0041976.1_g000002 Rmu_ssc0000348.1_g000008
rosa_roxburghii	Rroxscaffold_4G00297950
rosa_rugosa	Rorug01G0261700 Rorug01G0261800
rosa_samantha	Rh1AG275900 Rh1BG242700 Rh1CG259700 Rh1DG271100
rosa_wichuraiana	Rw1G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	685, 3285
AbsI	CCTCGAGG	1 cut(s)	2430
Acc36I	ACCTGC	6 cut(s)	685, 985, 1669, 2461, 2989, 3285
AccB1I	GGYRCC	1 cut(s)	331
AccB7I	CCANNNNNTGG	1 cut(s)	108
AccII	CGCG	1 cut(s)	3377
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	9 cut(s)	129, 215, 245, 278, 281, 2279, 3074, 3088, 3377
AclWI	GGATC	9 cut(s)	424, 671, 1043, 1056, 1214, 1358, 1830, 2943, 3019
AcsI	RAATTY	5 cut(s)	561, 716, 898, 1417, 3485
AcuI	CTGAAG	4 cut(s)	1095, 2066, 2226, 3373
AcyI	GRCGYC	1 cut(s)	3031
AfaI	GTAC	5 cut(s)	931, 961, 1150, 2056, 3259
AgeI	ACCGGT	1 cut(s)	496
AjiI	CACGTC	1 cut(s)	683
AjnI	CCWGG	7 cut(s)	2122, 2317, 2416, 2467, 2626, 2822, 3609
AjuI	GAANNNNNNNTTGG	4 cut(s)	428, 460, 2506, 2538
AleI	CACNNNNGTG	2 cut(s)	351, 3410
Alw21I	GWGCWC	7 cut(s)	1854, 1947, 2595, 2646, 2805, 3069, 3276
AlwI	GGATC	9 cut(s)	424, 671, 1043, 1056, 1214, 1358, 1830, 2943, 3019
AlwNI	CAGNNNCTG	3 cut(s)	1547, 1971, 2417
Ama87I	CYCGRG	2 cut(s)	251, 2430
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	7 cut(s)	119, 543, 1242, 2125, 2315, 3111, 3220
ApeKI	GCWGC	3 cut(s)	1586, 1984, 2995
ApoI	RAATTY	5 cut(s)	561, 716, 898, 1417, 3485
AsiGI	ACCGGT	1 cut(s)	496
Asp700I	GAANNNNTTC	3 cut(s)	716, 2079, 2377
AspLEI	GCGC	1 cut(s)	2224
AspS9I	GGNCC	4 cut(s)	90, 120, 3188, 3220
AsuC2I	CCSGG	2 cut(s)	2103, 2787
AsuHPI	GGTGA	7 cut(s)	204, 788, 907, 1961, 2024, 2180, 2267
AsuII	TTCGAA	1 cut(s)	3489
AsuNHI	GCTAGC	1 cut(s)	2560
AvaI	CYCGRG	2 cut(s)	251, 2430
AvaII	GGWCC	2 cut(s)	90, 3188
BaeI	ACNNNNGTAYC	2 cut(s)	1140, 1173
BamHI	GGATCC	1 cut(s)	1048
BanI	GGYRCC	1 cut(s)	331
BanII	GRGCYC	4 cut(s)	1854, 1947, 2103, 3069
BauI	CACGAG	2 cut(s)	789, 3663
BbsI	GAAGAC	1 cut(s)	1083
Bbv12I	GWGCWC	7 cut(s)	1854, 1947, 2595, 2646, 2805, 3069, 3276
BbvCI	CCTCAGC	1 cut(s)	993
BbvI	GCAGC	3 cut(s)	1598, 1996, 3007
BceAI	ACGGC	1 cut(s)	530
BciT130I	CCWGG	7 cut(s)	2124, 2319, 2418, 2469, 2628, 2824, 3611
BciVI	GTATCC	3 cut(s)	11, 1786, 1930
BclI	TGATCA	4 cut(s)	793, 2170, 3097, 3208
BcnI	CCSGG	2 cut(s)	2103, 2787
BfaI	CTAG	5 cut(s)	1266, 1413, 1979, 2561, 3627
BfmI	CTRYAG	2 cut(s)	1326, 1862
BfuAI	ACCTGC	6 cut(s)	685, 985, 1669, 2461, 2989, 3285
BfuI	GTATCC	3 cut(s)	11, 1786, 1930
BisI	GCNGC	6 cut(s)	278, 281, 1587, 1985, 2996, 3074
BlsI	GCNGC	6 cut(s)	279, 282, 1588, 1986, 2997, 3075
BmcAI	AGTACT	1 cut(s)	931
Bme1390I	CCNGG	9 cut(s)	2103, 2124, 2319, 2418, 2469, 2628, 2787, 2824, 3611
Bme18I	GGWCC	2 cut(s)	90, 3188
BmeT110I	CYCGRG	2 cut(s)	251, 2430
BmgBI	CACGTC	1 cut(s)	683
BmgT120I	GGNCC	4 cut(s)	90, 120, 3188, 3220
BmrFI	CCNGG	9 cut(s)	2103, 2124, 2319, 2418, 2469, 2628, 2787, 2824, 3611
BmtI	GCTAGC	1 cut(s)	2564
BoxI	GACNNNNGTC	2 cut(s)	2064, 3034
BpiI	GAAGAC	1 cut(s)	1083
BplI	GAGNNNNNCTC	2 cut(s)	3446, 3478
BpmI	CTGGAG	5 cut(s)	567, 1712, 2439, 3053, 3632
Bpu10I	CCTNAGC	2 cut(s)	993, 2097
Bpu14I	TTCGAA	1 cut(s)	3489
BpuEI	CTTGAG	3 cut(s)	1580, 1769, 3000
BpuMI	CCSGG	2 cut(s)	2103, 2787
BsaBI	GATNNNNATC	3 cut(s)	639, 2169, 3099
BsaHI	GRCGYC	1 cut(s)	3031
BsaI	GGTCTC	1 cut(s)	1266
BsaWI	WCCGGW	5 cut(s)	79, 451, 496, 538, 3409
BsaXI	ACNNNNNCTCC	2 cut(s)	3605, 3635
Bse118I	RCCGGY	1 cut(s)	496
Bse1I	ACTGG	3 cut(s)	2008, 3114, 3598
Bse3DI	GCAATG	4 cut(s)	1223, 2330, 3428, 3540
Bse8I	GATNNNNATC	3 cut(s)	639, 2169, 3099
BseAI	TCCGGA	1 cut(s)	79
BseBI	CCWGG	7 cut(s)	2124, 2319, 2418, 2469, 2628, 2824, 3611
BseJI	GATNNNNATC	3 cut(s)	639, 2169, 3099
BseMI	GCAATG	4 cut(s)	1223, 2330, 3428, 3540
BseNI	ACTGG	3 cut(s)	2008, 3114, 3598
BseRI	GAGGAG	8 cut(s)	276, 1010, 1097, 1523, 1769, 1772, 2448, 2984
BseXI	GCAGC	3 cut(s)	1598, 1996, 3007
BseYI	CCCAGC	1 cut(s)	2155
BsgI	GTGCAG	2 cut(s)	888, 3434
Bsh1236I	CGCG	1 cut(s)	3377
Bsh1285I	CGRYCG	1 cut(s)	3453
BshFI	GGCC	7 cut(s)	121, 545, 1244, 2127, 2317, 3113, 3222
BshNI	GGYRCC	1 cut(s)	331
BshTI	ACCGGT	1 cut(s)	496
BsiEI	CGRYCG	1 cut(s)	3453
BsiHKAI	GWGCWC	7 cut(s)	1854, 1947, 2595, 2646, 2805, 3069, 3276
BsiHKCI	CYCGRG	2 cut(s)	251, 2430
BsiSI	CCGG	8 cut(s)	80, 452, 497, 539, 2103, 2786, 3410, 3558
BslFI	GGGAC	1 cut(s)	1088
BsmFI	GGGAC	1 cut(s)	1088
BsmI	GAATGC	2 cut(s)	787, 3352
BsnI	GGCC	7 cut(s)	121, 545, 1244, 2127, 2317, 3113, 3222
Bso31I	GGTCTC	1 cut(s)	1266
BsoBI	CYCGRG	2 cut(s)	251, 2430
Bsp119I	TTCGAA	1 cut(s)	3489
Bsp1286I	GDGCHC	8 cut(s)	1854, 1947, 2103, 2595, 2646, 2805, 3069, 3276
Bsp13I	TCCGGA	1 cut(s)	79
Bsp19I	CCATGG	2 cut(s)	102, 297
BspACI	CCGC	9 cut(s)	129, 215, 245, 278, 281, 2279, 3074, 3088, 3377
BspANI	GGCC	7 cut(s)	121, 545, 1244, 2127, 2317, 3113, 3222
BspEI	TCCGGA	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	3377
BspHI	TCATGA	2 cut(s)	1770, 3205
BspMAI	CTGCAG	1 cut(s)	1866
BspMI	ACCTGC	6 cut(s)	685, 985, 1669, 2461, 2989, 3285
BspOI	GCTAGC	1 cut(s)	2564
BspPI	GGATC	9 cut(s)	424, 671, 1043, 1056, 1214, 1358, 1830, 2943, 3019
BspT104I	TTCGAA	1 cut(s)	3489
BspT107I	GGYRCC	1 cut(s)	331
BspTNI	GGTCTC	1 cut(s)	1266
BsrDI	GCAATG	4 cut(s)	1223, 2330, 3428, 3540
BsrFI	RCCGGY	1 cut(s)	496
BsrI	ACTGG	3 cut(s)	2008, 3114, 3598
BssAI	RCCGGY	1 cut(s)	496
BssNI	GRCGYC	1 cut(s)	3031
BssSI	CACGAG	2 cut(s)	789, 3663
BssT1I	CCWWGG	6 cut(s)	102, 116, 297, 1839, 3192, 3690
Bst2BI	CACGAG	2 cut(s)	789, 3663
Bst2UI	CCWGG	7 cut(s)	2124, 2319, 2418, 2469, 2628, 2824, 3611
Bst6I	CTCTTC	7 cut(s)	963, 1084, 1116, 1177, 2383, 3413, 3507
BstACI	GRCGYC	1 cut(s)	3031
BstBI	TTCGAA	1 cut(s)	3489
BstC8I	GCNNGC	7 cut(s)	377, 1374, 1976, 2151, 2562, 3224, 3282
BstDSI	CCRYGG	2 cut(s)	102, 297
BstEII	GGTNACC	1 cut(s)	3654
BstENI	CCTNNNNNAGG	1 cut(s)	1843
BstFNI	CGCG	1 cut(s)	3377
BstHHI	GCGC	1 cut(s)	2224
BstMCI	CGRYCG	1 cut(s)	3453
BstMWI	GCNNNNNNNGC	8 cut(s)	162, 214, 1870, 1984, 2713, 3073, 3455, 3710
BstNI	CCWGG	7 cut(s)	2124, 2319, 2418, 2469, 2628, 2824, 3611
BstNSI	RCATGY	2 cut(s)	1376, 1978
BstPAI	GACNNNNGTC	2 cut(s)	2064, 3034
BstPI	GGTNACC	1 cut(s)	3654
BstSCI	CCNGG	9 cut(s)	2101, 2122, 2317, 2416, 2467, 2626, 2785, 2822, 3609
BstSFI	CTRYAG	2 cut(s)	1326, 1862
BstUI	CGCG	1 cut(s)	3377
BstV1I	GCAGC	3 cut(s)	1598, 1996, 3007
BstV2I	GAAGAC	1 cut(s)	1083
BstX2I	RGATCY	5 cut(s)	676, 1048, 1363, 1835, 3011
BstXI	CCANNNNNNTGG	3 cut(s)	486, 735, 3697
BstYI	RGATCY	5 cut(s)	676, 1048, 1363, 1835, 3011
BsuI	GTATCC	3 cut(s)	11, 1786, 1930
BsuRI	GGCC	7 cut(s)	121, 545, 1244, 2127, 2317, 3113, 3222
BtgI	CCRYGG	2 cut(s)	102, 297
BtrI	CACGTC	1 cut(s)	683
BtsI	GCAGTG	5 cut(s)	346, 1011, 2335, 2970, 3350
BveI	ACCTGC	6 cut(s)	685, 985, 1669, 2461, 2989, 3285
Cac8I	GCNNGC	7 cut(s)	377, 1374, 1976, 2151, 2562, 3224, 3282
CaiI	CAGNNNCTG	3 cut(s)	1547, 1971, 2417
CciI	TCATGA	2 cut(s)	1770, 3205
CfoI	GCGC	1 cut(s)	2224
Cfr10I	RCCGGY	1 cut(s)	496
Cfr13I	GGNCC	4 cut(s)	90, 120, 3188, 3220
CseI	GACGC	1 cut(s)	3039
Csp6I	GTAC	5 cut(s)	930, 960, 1149, 2055, 3258
CspAI	ACCGGT	1 cut(s)	496
CviQI	GTAC	5 cut(s)	930, 960, 1149, 2055, 3258
Eam1104I	CTCTTC	7 cut(s)	963, 1084, 1116, 1177, 2383, 3413, 3507
EarI	CTCTTC	7 cut(s)	963, 1084, 1116, 1177, 2383, 3413, 3507
EciI	GGCGGA	1 cut(s)	144
Ecl136II	GAGCTC	3 cut(s)	1852, 1945, 3067
Eco130I	CCWWGG	6 cut(s)	102, 116, 297, 1839, 3192, 3690
Eco24I	GRGCYC	4 cut(s)	1854, 1947, 2103, 3069
Eco31I	GGTCTC	1 cut(s)	1266
Eco47I	GGWCC	2 cut(s)	90, 3188
Eco53kI	GAGCTC	3 cut(s)	1852, 1945, 3067
Eco57I	CTGAAG	4 cut(s)	1095, 2066, 2226, 3373
Eco88I	CYCGRG	2 cut(s)	251, 2430
Eco91I	GGTNACC	1 cut(s)	3654
EcoICRI	GAGCTC	3 cut(s)	1852, 1945, 3067
EcoNI	CCTNNNNNAGG	1 cut(s)	1843
EcoO65I	GGTNACC	1 cut(s)	3654
EcoRI	GAATTC	4 cut(s)	716, 898, 1417, 3485
EcoRII	CCWGG	7 cut(s)	2122, 2317, 2416, 2467, 2626, 2822, 3609
EcoT14I	CCWWGG	6 cut(s)	102, 116, 297, 1839, 3192, 3690
EcoT22I	ATGCAT	2 cut(s)	1374, 1378
EcoT38I	GRGCYC	4 cut(s)	1854, 1947, 2103, 3069
ErhI	CCWWGG	6 cut(s)	102, 116, 297, 1839, 3192, 3690
FalI	AAGNNNNNCTT	2 cut(s)	3643, 3675
FaqI	GGGAC	1 cut(s)	1088
FauNDI	CATATG	2 cut(s)	459, 1935
FbaI	TGATCA	4 cut(s)	793, 2170, 3097, 3208
Fnu4HI	GCNGC	6 cut(s)	278, 281, 1587, 1985, 2996, 3074
FriOI	GRGCYC	4 cut(s)	1854, 1947, 2103, 3069
Fsp4HI	GCNGC	6 cut(s)	278, 281, 1587, 1985, 2996, 3074
FspBI	CTAG	5 cut(s)	1266, 1413, 1979, 2561, 3627
GlaI	GCGC	1 cut(s)	2223
GluI	GCNGC	6 cut(s)	278, 281, 1587, 1985, 2996, 3074
GsaI	CCCAGC	1 cut(s)	2159
GsuI	CTGGAG	5 cut(s)	567, 1712, 2439, 3053, 3632
HaeIII	GGCC	7 cut(s)	121, 545, 1244, 2127, 2317, 3113, 3222
HapII	CCGG	8 cut(s)	80, 452, 497, 539, 2103, 2786, 3410, 3558
HgaI	GACGC	1 cut(s)	3039
HhaI	GCGC	1 cut(s)	2224
Hin1I	GRCGYC	1 cut(s)	3031
Hin6I	GCGC	1 cut(s)	2222
HinP1I	GCGC	1 cut(s)	2222
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HpaII	CCGG	8 cut(s)	80, 452, 497, 539, 2103, 2786, 3410, 3558
HphI	GGTGA	7 cut(s)	204, 788, 907, 1961, 2024, 2180, 2267
Hpy166II	GTNNAC	4 cut(s)	430, 1256, 2258, 3405
Hpy8I	GTNNAC	4 cut(s)	430, 1256, 2258, 3405
Hpy99I	CGWCG	2 cut(s)	1880, 2955
HpyCH4IV	ACGT	4 cut(s)	682, 1020, 1128, 2400
HpyF10VI	GCNNNNNNNGC	8 cut(s)	162, 214, 1870, 1984, 2713, 3073, 3455, 3710
HpySE526I	ACGT	4 cut(s)	682, 1020, 1128, 2400
Hsp92I	GRCGYC	1 cut(s)	3031
HspAI	GCGC	1 cut(s)	2222
Kpn2I	TCCGGA	1 cut(s)	79
Ksp22I	TGATCA	4 cut(s)	793, 2170, 3097, 3208
LmnI	GCTCC	9 cut(s)	112, 1303, 1849, 2464, 2623, 2674, 2960, 2971, 3072
Lsp1109I	GCAGC	3 cut(s)	1598, 1996, 3007
MaeI	CTAG	5 cut(s)	1266, 1413, 1979, 2561, 3627
MaeII	ACGT	4 cut(s)	682, 1020, 1128, 2400
MfeI	CAATTG	1 cut(s)	3246
MflI	RGATCY	5 cut(s)	676, 1048, 1363, 1835, 3011
MhlI	GDGCHC	8 cut(s)	1854, 1947, 2103, 2595, 2646, 2805, 3069, 3276
MlyI	GAGTC	5 cut(s)	1770, 2500, 2828, 3128, 3260
MmeI	TCCRAC	5 cut(s)	503, 590, 1770, 1931, 2821
Mph1103I	ATGCAT	2 cut(s)	1374, 1378
MroI	TCCGGA	1 cut(s)	79
MroXI	GAANNNNTTC	3 cut(s)	716, 2079, 2377
MseI	TTAA	6 cut(s)	1158, 1884, 2198, 2391, 2655, 2814
MslI	CAYNNNNRTG	5 cut(s)	225, 351, 1034, 3183, 3410
MspA1I	CMGCKG	1 cut(s)	1589
MspI	CCGG	8 cut(s)	80, 452, 497, 539, 2103, 2786, 3410, 3558
MspR9I	CCNGG	9 cut(s)	2103, 2124, 2319, 2418, 2469, 2628, 2787, 2824, 3611
MunI	CAATTG	1 cut(s)	3246
Mva1269I	GAATGC	2 cut(s)	787, 3352
MvaI	CCWGG	7 cut(s)	2124, 2319, 2418, 2469, 2628, 2824, 3611
MvnI	CGCG	1 cut(s)	3377
MwoI	GCNNNNNNNGC	8 cut(s)	162, 214, 1870, 1984, 2713, 3073, 3455, 3710
NciI	CCSGG	2 cut(s)	2103, 2787
NcoI	CCATGG	2 cut(s)	102, 297
NdeI	CATATG	2 cut(s)	459, 1935
NheI	GCTAGC	1 cut(s)	2560
NmeAIII	GCCGAG	3 cut(s)	1254, 2140, 2293
NmuCI	GTSAC	6 cut(s)	943, 1999, 2503, 2571, 2740, 3478
NsiI	ATGCAT	2 cut(s)	1374, 1378
NspI	RCATGY	2 cut(s)	1376, 1978
NspV	TTCGAA	1 cut(s)	3489
OliI	CACNNNNGTG	2 cut(s)	351, 3410
PaeI	GCATGC	2 cut(s)	1376, 1978
PaeR7I	CTCGAG	1 cut(s)	2430
PagI	TCATGA	2 cut(s)	1770, 3205
PaqCI	CACCTGC	2 cut(s)	685, 3285
PctI	GAATGC	2 cut(s)	787, 3352
PdmI	GAANNNNTTC	3 cut(s)	716, 2079, 2377
PflFI	GACNNNGTC	2 cut(s)	1570, 3400
PflMI	CCANNNNNTGG	1 cut(s)	108
PinAI	ACCGGT	1 cut(s)	496
PkrI	GCNGC	6 cut(s)	279, 282, 1588, 1986, 2997, 3075
Ple19I	CGATCG	1 cut(s)	3453
PleI	GAGTC	5 cut(s)	1770, 2500, 2827, 3127, 3260
PpsI	GAGTC	5 cut(s)	1770, 2500, 2827, 3127, 3260
PshAI	GACNNNNGTC	2 cut(s)	2064, 3034
Psp124BI	GAGCTC	3 cut(s)	1854, 1947, 3069
Psp6I	CCWGG	7 cut(s)	2122, 2317, 2416, 2467, 2626, 2822, 3609
PspEI	GGTNACC	1 cut(s)	3654
PspFI	CCCAGC	1 cut(s)	2155
PspGI	CCWGG	7 cut(s)	2122, 2317, 2416, 2467, 2626, 2822, 3609
PspPI	GGNCC	4 cut(s)	90, 120, 3188, 3220
PspXI	VCTCGAGB	1 cut(s)	2430
PsrI	GAACNNNNNNTAC	2 cut(s)	2914, 2946
PstI	CTGCAG	1 cut(s)	1866
PstNI	CAGNNNCTG	3 cut(s)	1547, 1971, 2417
PsuI	RGATCY	5 cut(s)	676, 1048, 1363, 1835, 3011
PsyI	GACNNNGTC	2 cut(s)	1570, 3400
PvuI	CGATCG	1 cut(s)	3453
PvuII	CAGCTG	1 cut(s)	1589
RsaI	GTAC	5 cut(s)	931, 961, 1150, 2056, 3259
RsaNI	GTAC	5 cut(s)	930, 960, 1149, 2055, 3258
RseI	CAYNNNNRTG	5 cut(s)	225, 351, 1034, 3183, 3410
SacI	GAGCTC	3 cut(s)	1854, 1947, 3069
SaqAI	TTAA	6 cut(s)	1158, 1884, 2198, 2391, 2655, 2814
SatI	GCNGC	6 cut(s)	278, 281, 1587, 1985, 2996, 3074
Sau96I	GGNCC	4 cut(s)	90, 120, 3188, 3220
ScaI	AGTACT	1 cut(s)	931
SchI	GAGTC	5 cut(s)	1770, 2500, 2828, 3128, 3260
ScrFI	CCNGG	9 cut(s)	2103, 2124, 2319, 2418, 2469, 2628, 2787, 2824, 3611
SduI	GDGCHC	8 cut(s)	1854, 1947, 2103, 2595, 2646, 2805, 3069, 3276
SfcI	CTRYAG	2 cut(s)	1326, 1862
Sfr274I	CTCGAG	1 cut(s)	2430
SfuI	TTCGAA	1 cut(s)	3489
SinI	GGWCC	2 cut(s)	90, 3188
SlaI	CTCGAG	1 cut(s)	2430
SmiMI	CAYNNNNRTG	5 cut(s)	225, 351, 1034, 3183, 3410
SmlI	CTYRAG	4 cut(s)	1559, 1784, 2430, 3015
SmoI	CTYRAG	4 cut(s)	1559, 1784, 2430, 3015
SphI	GCATGC	2 cut(s)	1376, 1978
SsiI	CCGC	9 cut(s)	129, 215, 245, 278, 281, 2279, 3074, 3088, 3377
SspMI	CTAG	5 cut(s)	1266, 1413, 1979, 2561, 3627
SstI	GAGCTC	3 cut(s)	1854, 1947, 3069
StyD4I	CCNGG	9 cut(s)	2101, 2122, 2317, 2416, 2467, 2626, 2785, 2822, 3609
StyI	CCWWGG	6 cut(s)	102, 116, 297, 1839, 3192, 3690
TaiI	ACGT	4 cut(s)	685, 1023, 1131, 2403
TaqII	GACCGA	2 cut(s)	818, 3173
TatI	WGTACW	1 cut(s)	929
TauI	GCSGC	3 cut(s)	280, 283, 3076
Tru1I	TTAA	6 cut(s)	1158, 1884, 2198, 2391, 2655, 2814
Tru9I	TTAA	6 cut(s)	1158, 1884, 2198, 2391, 2655, 2814
TseFI	GTSAC	6 cut(s)	943, 1999, 2503, 2571, 2740, 3478
TseI	GCWGC	3 cut(s)	1586, 1984, 2995
Tsp45I	GTSAC	6 cut(s)	943, 1999, 2503, 2571, 2740, 3478
TspGWI	ACGGA	7 cut(s)	30, 87, 867, 1541, 2948, 2975, 3497
Tth111I	GACNNNGTC	2 cut(s)	1570, 3400
Van91I	CCANNNNNTGG	1 cut(s)	108
VpaK11BI	GGWCC	2 cut(s)	90, 3188
XagI	CCTNNNNNAGG	1 cut(s)	1843
XapI	RAATTY	5 cut(s)	561, 716, 898, 1417, 3485
XceI	RCATGY	2 cut(s)	1376, 1978
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XhoI	CTCGAG	1 cut(s)	2430
XmnI	GAANNNNTTC	3 cut(s)	716, 2079, 2377
XspI	CTAG	5 cut(s)	1266, 1413, 1979, 2561, 3627
ZrmI	AGTACT	1 cut(s)	931
Zsp2I	ATGCAT	2 cut(s)	1374, 1378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.