Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002240

Physical Location & Seq

Genomic Coordinates Reverse (-)

12228344 .. 12229855

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAATTTAAGAGCTCGTTCGATTTCAGTGATGGGTATGAAGCCGGTGAAGGGGAGGAAAATTAACTGGATGAAAGCCGGAATTTTGGAATCAGACAAGCTCTTGACCGTTAGCCCATACTATGCCGAAGAACTTGTTTCTGCAGTTGAAAAAGGAGTCGAATTGGATAACATTATTCGGAAAACTGGAATTTTTGGAATTGTGAATGGTATGGACGTCCAGGAATGGAATCCCTCAACTGACAAGTATACAATTATCAAATACGACGCTTCAACTGTGGCTGATGCAAAGCCTCTTCTGAAAGAAACCCTCCAAGCAGAAGTCGGATTGCCGGTGGATAGAGACATCCCTGTCATAGGTTTCATTGGTAGGCTTGAAGAGCAGAGAGGTTCAGACATTCTCATGGAAGCCATTCCCCATTTTATCAAAGAGGATGTTCAGATTATAGTCCTCGGGACTGGCAAAAAGCCAATGGAGAAGCAGCTTGAACAGCTGGAGATGGAATACCCCGACAAAGCCAGAGGGGTAGCGAAATTCAGTGTCCCTCTGGCCCATATGATCACAGCAGGAGCTGATTTCATGTTGGTTTCGAGCAGATTCGAGCCATGCGGTCTCATTCAGTTGCACGCCATGCGTTATGGAACCGTGCCCATTGTTGCATCAACCGGCGGGTTGGTAGACACTGTTAAAGAAGGATTCACCGGATTTCATATGGGAGCCTTCAATGTGGAATGCGAAGCTGTTGATCCGGCGGATGCACAAGCAATCGCTACAACCATCACAAGAGCCCTCGGAGCTATTGGAACTCCAGCTTTTACTGAGATTATAAGCAACTGCATGGCTCAAGATCTATCGTGGAAGGGTCCTGCTAAGAAGTGGGAGCAAGTGCTGCTGAGTTTGGGTGTCGCTGGTGGCCAACCTGGGATCGAGGGTGAGGAAATTGCACCGCTTACAAAGGAAAATGTCGCGATGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000271 GO:0003674 GO:0003824 GO:0004373 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0008194 GO:0009011 GO:0009058 GO:0009059 GO:0009250 GO:0009501 GO:0009507 GO:0009536 GO:0009987 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017076 GO:0019252 GO:0019863 GO:0019865 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033692 GO:0034637 GO:0034645 GO:0035251 GO:0036094 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043531 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0046527 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Glyco_transf_5 Glycos_transf_1

Protein Analysis

326

Amino Acids

35.26

Weight (kDa)

5.15

Isoelectric Point (pI)

28.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_5	PF08323	19 - 60	4.7e-08	Starch synthase catalytic domain
GT4-conflict	PF20706	113 - 288	1.2e-06	Family 4 Glycosyltransferase in conflict systems
Glycos_transf_1	PF00534	115 - 243	4.6e-15	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	117 - 264	4.6e-15	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32900
fragaria_vesca	FvH4_5g10580 FvH4_5g10580 FvH4_5g10580 FvH4_5g10580 FvH4_5g10580 FvH4_5g10580 FvH4_7g17630 FvH4_7g17630 FvH4_7g17630 FvH4_7g17630
malus_domestica	MD06G1122100.v1.1 MD07G1159300.v1.1 MD14G1138500.v1.1
prunus_persica	Prupe.2G197400_v2.0.a1 Prupe.2G197400_v2.0.a1 Prupe.2G197400_v2.0.a1 Prupe.5G132800_v2.0.a1 Prupe.5G132800_v2.0.a1
pyrus_communis	pycom01g11240 pycom06g11320 pycom07g15590 pycom14g11360
rosa_chinensis	RchiOBHm_Chr1g0361061 RchiOBHm_Chr7g0187571
rosa_laevigata	RLG00000004770 RLG00000027751
rosa_multiflora	Rmu_co8027448.1_g000001 Rmu_sc0000677.1_g000001 Rmu_ssc0000110.1_g000020
rosa_roxburghii	Rroxscaffold_3G00267310 Rroxscaffold_4G00295460
rosa_rugosa	Rorug01G0285200 Rorug06G0482700
rosa_samantha	Rh1AG296600 Rh1BG260900 Rh1CG278200 Rh1DG290900 Rh7AG087600 Rh7BG088900 Rh7CG088100 Rh7DG089800
rosa_wichuraiana	Rw1G026200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	827
AasI	GACNNNNNNGTC	1 cut(s)	350
AatII	GACGTC	1 cut(s)	219
AccI	GTMKAC	2 cut(s)	248, 678
AccII	CGCG	1 cut(s)	968
AciI	CCGC	4 cut(s)	609, 669, 752, 947
AclWI	GGATC	2 cut(s)	740, 932
AcoI	YGGCCR	1 cut(s)	913
AcsI	RAATTY	4 cut(s)	4, 81, 189, 533
AcyI	GRCGYC	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	50, 356
AgsI	TTSAA	5 cut(s)	149, 273, 377, 488, 724
AjnI	CCWGG	2 cut(s)	219, 919
AluBI	AGCT	8 cut(s)	14, 100, 484, 493, 572, 740, 797, 812
AluI	AGCT	8 cut(s)	14, 100, 484, 493, 572, 740, 797, 812
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	2 cut(s)	336, 617
AlwI	GGATC	2 cut(s)	740, 932
AlwNI	CAGNNNCTG	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	452
AoxI	GGCC	2 cut(s)	549, 913
ApeKI	GCWGC	2 cut(s)	481, 889
ApoI	RAATTY	4 cut(s)	4, 81, 189, 533
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	2 cut(s)	550, 863
AsuHPI	GGTGA	3 cut(s)	58, 691, 944
AvaI	CYCGRG	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	863
BaeGI	GKGCMC	1 cut(s)	651
BalI	TGGCCA	1 cut(s)	915
BanII	GRGCYC	2 cut(s)	16, 790
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	493, 876
BccI	CCATC	3 cut(s)	25, 493, 785
BciT130I	CCWGG	2 cut(s)	221, 921
BclI	TGATCA	1 cut(s)	558
BcoDI	GTCTC	2 cut(s)	336, 617
BfmI	CTRYAG	1 cut(s)	141
BglII	AGATCT	1 cut(s)	847
BisI	GCNGC	2 cut(s)	482, 890
BlsI	GCNGC	2 cut(s)	483, 891
Bme1390I	CCNGG	2 cut(s)	221, 921
Bme18I	GGWCC	1 cut(s)	863
BmeT110I	CYCGRG	1 cut(s)	452
BmgT120I	GGNCC	2 cut(s)	550, 863
BmiI	GGNNCC	3 cut(s)	643, 718, 864
BmrFI	CCNGG	2 cut(s)	221, 921
BmsI	GCATC	4 cut(s)	274, 668, 745, 960
BpmI	CTGGAG	2 cut(s)	515, 792
BpuEI	CTTGAG	1 cut(s)	828
BsaHI	GRCGYC	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	617
BsaJI	CCNNGG	3 cut(s)	451, 790, 920
BsaWI	WCCGGW	1 cut(s)	701
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 356
Bse118I	RCCGGY	3 cut(s)	43, 331, 665
Bse1I	ACTGG	3 cut(s)	71, 190, 463
BseBI	CCWGG	2 cut(s)	221, 921
BseDI	CCNNGG	3 cut(s)	451, 790, 920
BseGI	GGATG	4 cut(s)	75, 345, 439, 760
BseLI	CCNNNNNNNGG	2 cut(s)	50, 356
BseMII	CTCAG	2 cut(s)	810, 884
BseNI	ACTGG	3 cut(s)	71, 190, 463
BseSI	GKGCMC	1 cut(s)	651
BseXI	GCAGC	2 cut(s)	493, 876
Bsh1236I	CGCG	1 cut(s)	968
BshFI	GGCC	2 cut(s)	551, 915
BsiHKAI	GWGCWC	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	452
BsiSI	CCGG	6 cut(s)	44, 78, 332, 666, 702, 749
BslFI	GGGAC	2 cut(s)	469, 527
BslI	CCNNNNNNNGG	2 cut(s)	50, 356
BsmAI	GTCTC	2 cut(s)	336, 617
BsmFI	GGGAC	2 cut(s)	469, 527
BsmI	GAATGC	1 cut(s)	737
BsnI	GGCC	2 cut(s)	551, 915
Bso31I	GGTCTC	1 cut(s)	617
BsoBI	CYCGRG	1 cut(s)	452
Bsp1286I	GDGCHC	3 cut(s)	16, 651, 790
Bsp143I	GATC	4 cut(s)	558, 745, 847, 924
Bsp68I	TCGCGA	1 cut(s)	968
BspACI	CCGC	4 cut(s)	609, 669, 752, 947
BspANI	GGCC	2 cut(s)	551, 915
BspCNI	CTCAG	2 cut(s)	811, 885
BspFNI	CGCG	1 cut(s)	968
BspLI	GGNNCC	3 cut(s)	643, 718, 864
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	2 cut(s)	740, 932
BspQI	GCTCTTC	1 cut(s)	372
BspTNI	GGTCTC	1 cut(s)	617
BsrFI	RCCGGY	3 cut(s)	43, 331, 665
BsrI	ACTGG	3 cut(s)	71, 190, 463
BssAI	RCCGGY	3 cut(s)	43, 331, 665
BssECI	CCNNGG	3 cut(s)	451, 790, 920
BssMI	GATC	4 cut(s)	558, 745, 847, 924
BssNAI	GTATAC	1 cut(s)	249
BssNI	GRCGYC	1 cut(s)	216
Bst1107I	GTATAC	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	221, 921
Bst4CI	ACNGT	4 cut(s)	109, 277, 646, 685
Bst6I	CTCTTC	2 cut(s)	300, 372
BstACI	GRCGYC	1 cut(s)	216
BstAPI	GCANNNNNTGC	2 cut(s)	631, 889
BstC8I	GCNNGC	1 cut(s)	627
BstDEI	CTNAG	3 cut(s)	819, 870, 893
BstENI	CCTNNNNNAGG	1 cut(s)	354
BstF5I	GGATG	4 cut(s)	75, 345, 439, 760
BstFNI	CGCG	1 cut(s)	968
BstKTI	GATC	4 cut(s)	561, 748, 850, 927
BstMAI	GTCTC	2 cut(s)	336, 617
BstMBI	GATC	4 cut(s)	558, 745, 847, 924
BstMWI	GCNNNNNNNGC	5 cut(s)	379, 490, 631, 794, 889
BstNI	CCWGG	2 cut(s)	221, 921
BstSCI	CCNGG	2 cut(s)	219, 919
BstSFI	CTRYAG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	651
BstUI	CGCG	1 cut(s)	968
BstV1I	GCAGC	2 cut(s)	493, 876
BstX2I	RGATCY	1 cut(s)	847
BstYI	RGATCY	1 cut(s)	847
BstZ17I	GTATAC	1 cut(s)	249
BsuRI	GGCC	2 cut(s)	551, 915
BtsCI	GGATG	4 cut(s)	75, 345, 439, 760
BtsIMutI	CAGTG	3 cut(s)	33, 544, 681
BtuMI	TCGCGA	1 cut(s)	968
Cac8I	GCNNGC	1 cut(s)	627
CaiI	CAGNNNCTG	1 cut(s)	572
Cfr10I	RCCGGY	3 cut(s)	43, 331, 665
Cfr13I	GGNCC	2 cut(s)	550, 863
CseI	GACGC	1 cut(s)	275
CviAII	CATG	5 cut(s)	403, 580, 606, 631, 838
DdeI	CTNAG	3 cut(s)	819, 870, 893
DpnI	GATC	4 cut(s)	560, 747, 849, 926
DpnII	GATC	4 cut(s)	558, 745, 847, 924
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
EaeI	YGGCCR	1 cut(s)	913
Eam1104I	CTCTTC	2 cut(s)	300, 372
EarI	CTCTTC	2 cut(s)	300, 372
EciI	GGCGGA	1 cut(s)	767
Ecl136II	GAGCTC	1 cut(s)	14
Eco24I	GRGCYC	2 cut(s)	16, 790
Eco31I	GGTCTC	1 cut(s)	617
Eco47I	GGWCC	1 cut(s)	863
Eco53kI	GAGCTC	1 cut(s)	14
Eco88I	CYCGRG	1 cut(s)	452
EcoICRI	GAGCTC	1 cut(s)	14
EcoNI	CCTNNNNNAGG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	863
EcoRII	CCWGG	2 cut(s)	219, 919
EcoT38I	GRGCYC	2 cut(s)	16, 790
FaeI	CATG	5 cut(s)	406, 583, 609, 634, 841
FaqI	GGGAC	2 cut(s)	469, 527
FatI	CATG	5 cut(s)	402, 579, 605, 630, 837
FauI	CCCGC	1 cut(s)	662
FauNDI	CATATG	2 cut(s)	555, 711
FbaI	TGATCA	1 cut(s)	558
FblI	GTMKAC	2 cut(s)	248, 678
Fnu4HI	GCNGC	2 cut(s)	482, 890
FokI	GGATG	4 cut(s)	82, 332, 446, 767
FriOI	GRGCYC	2 cut(s)	16, 790
Fsp4HI	GCNGC	2 cut(s)	482, 890
GluI	GCNGC	2 cut(s)	482, 890
GsuI	CTGGAG	2 cut(s)	515, 792
HaeIII	GGCC	2 cut(s)	551, 915
HapII	CCGG	6 cut(s)	44, 78, 332, 666, 702, 749
HgaI	GACGC	1 cut(s)	275
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	5 cut(s)	406, 583, 609, 634, 841
HinfI	GANTC	5 cut(s)	89, 156, 229, 597, 696
HpaII	CCGG	6 cut(s)	44, 78, 332, 666, 702, 749
HphI	GGTGA	3 cut(s)	58, 691, 944
Hpy166II	GTNNAC	2 cut(s)	249, 679
Hpy188I	TCNGA	7 cut(s)	94, 180, 300, 326, 394, 441, 794
Hpy188III	TCNNGA	4 cut(s)	103, 454, 845, 967
Hpy8I	GTNNAC	2 cut(s)	249, 679
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	4 cut(s)	43, 686, 730, 853
HpyCH4III	ACNGT	4 cut(s)	109, 277, 646, 685
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	7 cut(s)	143, 287, 625, 659, 758, 837, 944
HpyF10VI	GCNNNNNNNGC	5 cut(s)	379, 490, 631, 794, 889
HpyF3I	CTNAG	3 cut(s)	819, 870, 893
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	5 cut(s)	406, 583, 609, 634, 841
Ksp22I	TGATCA	1 cut(s)	558
Kzo9I	GATC	4 cut(s)	558, 745, 847, 924
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	4 cut(s)	569, 716, 794, 880
Lsp1109I	GCAGC	2 cut(s)	493, 876
LweI	GCATC	4 cut(s)	274, 668, 745, 960
MaeII	ACGT	1 cut(s)	216
MalI	GATC	4 cut(s)	560, 747, 849, 926
MboI	GATC	4 cut(s)	558, 745, 847, 924
MboII	GAAGA	3 cut(s)	140, 287, 389
MflI	RGATCY	1 cut(s)	847
MhlI	GDGCHC	3 cut(s)	16, 651, 790
MlsI	TGGCCA	1 cut(s)	915
MluCI	AATT	9 cut(s)	4, 60, 81, 161, 189, 198, 252, 533, 939
MluNI	TGGCCA	1 cut(s)	915
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	304
Mox20I	TGGCCA	1 cut(s)	915
MroXI	GAANNNNTTC	1 cut(s)	411
MscI	TGGCCA	1 cut(s)	915
MseI	TTAA	3 cut(s)	8, 63, 687
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	915
MspA1I	CMGCKG	1 cut(s)	493
MspI	CCGG	6 cut(s)	44, 78, 332, 666, 702, 749
MspR9I	CCNGG	2 cut(s)	221, 921
Mva1269I	GAATGC	1 cut(s)	737
MvaI	CCWGG	2 cut(s)	221, 921
MvnI	CGCG	1 cut(s)	968
MwoI	GCNNNNNNNGC	5 cut(s)	379, 490, 631, 794, 889
NdeI	CATATG	2 cut(s)	555, 711
NdeII	GATC	4 cut(s)	558, 745, 847, 924
NlaIII	CATG	5 cut(s)	406, 583, 609, 634, 841
NlaIV	GGNNCC	3 cut(s)	643, 718, 864
NruI	TCGCGA	1 cut(s)	968
PciSI	GCTCTTC	1 cut(s)	372
PctI	GAATGC	1 cut(s)	737
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	4 cut(s)	89, 229, 597, 696
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	483, 891
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PpuMI	RGGWCCY	1 cut(s)	863
PsiI	TTATAA	1 cut(s)	827
Psp124BI	GAGCTC	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	863
Psp6I	CCWGG	2 cut(s)	219, 919
PspGI	CCWGG	2 cut(s)	219, 919
PspN4I	GGNNCC	3 cut(s)	643, 718, 864
PspPI	GGNCC	2 cut(s)	550, 863
PspPPI	RGGWCCY	1 cut(s)	863
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	1 cut(s)	847
PvuII	CAGCTG	1 cut(s)	493
RruI	TCGCGA	1 cut(s)	968
RseI	CAYNNNNRTG	1 cut(s)	401
SacI	GAGCTC	1 cut(s)	16
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	3 cut(s)	8, 63, 687
SatI	GCNGC	2 cut(s)	482, 890
Sau3AI	GATC	4 cut(s)	558, 745, 847, 924
Sau96I	GGNCC	2 cut(s)	550, 863
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	2 cut(s)	221, 921
SduI	GDGCHC	3 cut(s)	16, 651, 790
SfaNI	GCATC	4 cut(s)	274, 668, 745, 960
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	863
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	843
SmoI	CTYRAG	1 cut(s)	843
Sse9I	AATT	9 cut(s)	4, 60, 81, 161, 189, 198, 252, 533, 939
SsiI	CCGC	4 cut(s)	609, 669, 752, 947
SstI	GAGCTC	1 cut(s)	16
StyD4I	CCNGG	2 cut(s)	219, 919
TaaI	ACNGT	4 cut(s)	109, 277, 646, 685
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	5 cut(s)	20, 159, 590, 600, 927
TasI	AATT	9 cut(s)	4, 60, 81, 161, 189, 198, 252, 533, 939
TfiI	GAWTC	4 cut(s)	89, 229, 597, 696
Tru1I	TTAA	3 cut(s)	8, 63, 687
Tru9I	TTAA	3 cut(s)	8, 63, 687
TscAI	CASTG	3 cut(s)	33, 544, 688
TseI	GCWGC	2 cut(s)	481, 889
TspDTI	ATGAA	6 cut(s)	17, 53, 86, 352, 568, 698
TspRI	CASTG	3 cut(s)	33, 544, 688
VpaK11BI	GGWCC	1 cut(s)	863
XagI	CCTNNNNNAGG	1 cut(s)	354
XapI	RAATTY	4 cut(s)	4, 81, 189, 533
XmiI	GTMKAC	2 cut(s)	248, 678
XmnI	GAANNNNTTC	1 cut(s)	411
ZraI	GACGTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.