Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002240

Physical Location & Seq

Genomic Coordinates Forward (+)

60337777 .. 60339958

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0482700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAAGAAGGTTTCTGGGTTGTGGGGGGTTTTGCTTTTGGTGCTAATGTTCCTTGGTGTCTCTAGCAGCAGAAAAGCCTCCTTATTTCCAGATATGCTTGTCAACCACCACGGTGATGGTTTGAAAATGACAAGTACAAGCAGGAGACTCCAGGTGATCAGCGGATACAATCACAGGCACAGGCACACAGGCAATGTAGATCTGGATGATTACCGCCCCATTGATCCTTCTCCAAGTTCAAAAGCTTCTATTAAACCTGGACCCATCGAGCACAGCGCGCCTATAATCCCATATATTCCAAATCCAAAGTCTTCGCCTCCTCGTTCTCCCAGTCCAAGTGGTTCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000271 GO:0003674 GO:0003824 GO:0004373 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0008194 GO:0009011 GO:0009058 GO:0009059 GO:0009250 GO:0009501 GO:0009507 GO:0009536 GO:0009569 GO:0009987 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017076 GO:0019252 GO:0019863 GO:0019865 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033692 GO:0034637 GO:0034645 GO:0035251 GO:0036094 GO:0043036 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043531 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046527 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Glyco_transf_5 Glycos_transf_1

Protein Analysis

116

Amino Acids

12.6

Weight (kDa)

10.16

Isoelectric Point (pI)

61.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32900
fragaria_vesca	FvH4_5g10580 FvH4_5g10580 FvH4_5g10580 FvH4_5g10580 FvH4_5g10580 FvH4_5g10580 FvH4_7g17630 FvH4_7g17630 FvH4_7g17630 FvH4_7g17630
malus_domestica	MD06G1122100.v1.1 MD07G1159300.v1.1 MD14G1138500.v1.1
prunus_persica	Prupe.2G197400_v2.0.a1 Prupe.2G197400_v2.0.a1 Prupe.2G197400_v2.0.a1 Prupe.5G132800_v2.0.a1 Prupe.5G132800_v2.0.a1
pyrus_communis	pycom01g11240 pycom06g11320 pycom07g15590 pycom14g11360
rosa_chinensis	RchiOBHm_Chr1g0361061 RchiOBHm_Chr7g0187571
rosa_laevigata	RLG00000004770 RLG00000027751
rosa_multiflora	Rmu_co8027448.1_g000001 Rmu_sc0000677.1_g000001 Rmu_ssc0000110.1_g000020
rosa_roxburghii	Rroxscaffold_3G00267310 Rroxscaffold_4G00295460
rosa_rugosa	Rorug01G0285200 Rorug06G0482700
rosa_samantha	Rh1AG296600 Rh1BG260900 Rh1CG278200 Rh1DG290900 Rh7AG087600 Rh7BG088900 Rh7CG088100 Rh7DG089800
rosa_wichuraiana	Rw1G026200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	278
AciI	CCGC	2 cut(s)	162, 214
AclWI	GGATC	1 cut(s)	218
AfaI	GTAC	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	124, 240
AjnI	CCWGG	2 cut(s)	150, 256
AleI	CACNNNNGTG	1 cut(s)	111
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	64, 139
AlwI	GGATC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	66
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AspLEI	GCGC	2 cut(s)	278, 280
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	2 cut(s)	125, 166
AvaII	GGWCC	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	2 cut(s)	110, 272
BciT130I	CCWGG	2 cut(s)	152, 258
BciVI	GTATCC	1 cut(s)	158
BclI	TGATCA	1 cut(s)	156
BcoDI	GTCTC	2 cut(s)	64, 139
BfaI	CTAG	1 cut(s)	63
BfuI	GTATCC	1 cut(s)	158
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	68
Bme1390I	CCNGG	2 cut(s)	152, 258
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	2 cut(s)	152, 258
BmrI	ACTGGG	1 cut(s)	324
BmuI	ACTGGG	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	303
BpmI	CTGGAG	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	52, 109
Bse1I	ACTGG	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	152, 258
BseDI	CCNNGG	2 cut(s)	52, 109
BseGI	GGATG	1 cut(s)	211
BseMI	GCAATG	1 cut(s)	199
BseNI	ACTGG	1 cut(s)	330
BsePI	GCGCGC	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	273
BsmAI	GTCTC	2 cut(s)	64, 139
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	156, 199, 223
BspACI	CCGC	2 cut(s)	162, 214
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	330
BssECI	CCNNGG	2 cut(s)	52, 109
BssHII	GCGCGC	1 cut(s)	276
BssMI	GATC	3 cut(s)	156, 199, 223
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	2 cut(s)	152, 258
Bst4CI	ACNGT	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	278
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	278
BstHHI	GCGC	2 cut(s)	278, 280
BstKTI	GATC	3 cut(s)	159, 202, 226
BstMAI	GTCTC	2 cut(s)	64, 139
BstMBI	GATC	3 cut(s)	156, 199, 223
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 277
BstNI	CCWGG	2 cut(s)	152, 258
BstSCI	CCNGG	2 cut(s)	150, 256
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	78
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	199
BstXI	CCANNNNNNTGG	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	158
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	278
CfoI	GCGC	2 cut(s)	278, 280
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	135
CviJI	RGCY	2 cut(s)	77, 245
CviKI_1	RGCY	2 cut(s)	77, 245
CviQI	GTAC	1 cut(s)	135
DpnI	GATC	3 cut(s)	158, 201, 225
DpnII	GATC	3 cut(s)	156, 199, 223
Eco130I	CCWWGG	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	150, 256
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaiI	YATR	4 cut(s)	95, 284, 292, 294
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	67
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	67
FspBI	CTAG	1 cut(s)	63
GlaI	GCGC	2 cut(s)	277, 279
GluI	GCNGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	134
HhaI	GCGC	2 cut(s)	278, 280
Hin6I	GCGC	2 cut(s)	276, 278
HinP1I	GCGC	2 cut(s)	276, 278
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	243
HinfI	GANTC	1 cut(s)	147
HphI	GGTGA	2 cut(s)	125, 166
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188III	TCNNGA	2 cut(s)	89, 203
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	237
HpyCH4III	ACNGT	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 277
HspAI	GCGC	2 cut(s)	276, 278
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	3 cut(s)	156, 199, 223
Lsp1109I	GCAGC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	63
MalI	GATC	3 cut(s)	158, 201, 225
MboI	GATC	3 cut(s)	156, 199, 223
MboII	GAAGA	2 cut(s)	16, 303
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	141
MnlI	CCTC	3 cut(s)	88, 327, 330
MseI	TTAA	2 cut(s)	252, 349
MslI	CAYNNNNRTG	2 cut(s)	111, 114
MspA1I	CMGCKG	1 cut(s)	162
MspR9I	CCNGG	2 cut(s)	152, 258
MvaI	CCWGG	2 cut(s)	152, 258
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	40, 277
NdeII	GATC	3 cut(s)	156, 199, 223
NlaIV	GGNNCC	1 cut(s)	262
OliI	CACNNNNGTG	1 cut(s)	111
PauI	GCGCGC	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	68
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	150, 256
PspGI	CCWGG	2 cut(s)	150, 256
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	199
PteI	GCGCGC	1 cut(s)	276
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	2 cut(s)	111, 114
SaqAI	TTAA	2 cut(s)	252, 349
SatI	GCNGC	1 cut(s)	67
Sau3AI	GATC	3 cut(s)	156, 199, 223
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	2 cut(s)	152, 258
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	4 cut(s)	12, 156, 247, 259
SinI	GGWCC	1 cut(s)	260
SmiMI	CAYNNNNRTG	2 cut(s)	111, 114
SsiI	CCGC	2 cut(s)	162, 214
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	150, 256
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	267
TatI	WGTACW	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	252, 349
Tru9I	TTAA	2 cut(s)	252, 349
TseI	GCWGC	1 cut(s)	66
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.