Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002240

Physical Location & Seq

Genomic Coordinates Forward (+)

15502289 .. 15506107

Gene Structure 3819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00295460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1821 bp

ATGGCAACTGTCACTGCTTCAAGCTTCACTTCCACAAGCGCTCATGTCAACTACGGTGTGTCATCTTCCCCAGAGGCTAAACCGACGTTTCAGAACTTGGGTTTTGGGAAGCAGGCCCCGACTCATAATGGGTTGAGAGCTTTGAACGTAGCGACTGCGAAATCGATTGCAATGAGGAAATTGAACACTCGGAGTTCGAAGCGTTCGGGTGCTATTGTATGTGGGAGTGGGATGAATTTGGTGTTTGTGGGTGCAGAGGTTGGTCCATGGAGCAAGACTGGTGGACTTGGAGATGTTCTTGGAGGTCTCCCACCAGCTATGGCCGCAAATGGGCACCGTGTGATGACTGTTTCACCGCGTTATGATCAGTACAAAGATGCATGGGATACAGAAGTTACAGTTGAGCTGAAAGTAGGACAGAAGATTCTGACGGTTCGGTTTTTTCACTGCCACAAACGAGGGGTTGATCGTGTTTTTGTAGATCACCCGCTGTTTCTCGAAAAGGTATGGGGGAAAACTGCATCGAAAATATACGGGCCTAGGGCTGGTGAGGATTACACGGACAACCAACTTAGATTCAGCTTGTTATGCCAGGCAGCTCTAGAGGCACCGAGAGTTCTGAATCTTACCAGCAACAAATATTTTTCAGGACCATATGGAGAAGATGTTGTTTTCATTGCCAATGACTGGCACACAGCCCTCCTCCCCTGCTACCTGAAAGCCATATACCAACCCAAAGGAATATACAAGAGTGCCAAAGTAGCCTTTTGCATTCACAACATTGCATACCAAGGCAGATTTGCATTCGCGGACTTCTCACTTCTCAATCTGCCAGCTGCATTTAAAAGCTCCTTTGACTTCATTGATGGCTATGACAAACCAGTGAAAGGGAGGAAAATTAACTGGATGAAAGCTGCAATCTTAGAATCTGACAAGGTCTTGACCGTTAGCCCGTACTACGCCAAAGAACTTGTTTCTTCAATCGAGAAAGGAGTTGAACTGGATAACATTATTCGGAAAACTGGAATTCTTGGTATAGTAAATGGTATGGATGTCCAGGAATGGAACCCGTTAACTGACAAGTATACAGATGTCAAATATGATGCTACAACAGTGACGGATGCAAAGCCTATTTTGAAAGAAGCCCTCCAAGCAGAAGTCGGTTTGCCAGTGGATAAGGACATCCCTGTAATAGGTTTCATTGGTAGGCTTGAAGAGCAGAAGGGTTCGGATATTCTTATAGAAGCGATTCCCCACTTCATCAAAGAGAAGGTTCAGATTATAGTTCTTGGGACTGGCAAAAAACCAATGGAGAAGCAGCTTCTCCAATTGGAAGAAGAATACCCTGACAAAGCTCGAGGAGTGGCAAAATTTAACGTTCCTCTGGCCCATATGATAACAGCCGGAGCTGATTTTATGTTGATTCCCAGCAGATTTGAGCCTTGTGGTCTCATTCAGTTGCATGCTATGCGTTATGGAACTGTTCCCATTGTTGCATCAACTGGCGGGTTGGTAGACACTGTTAAAGAAGGATTCACAGGATTTCAGATGGGAAGTTTCAATGTCGAGTGTGACGTTGTTGATCCTGTGGACGTACAAGCTGTGGCCACAACTGTTACAAGAGCTCTTAGAACTTATGGAACTCCGGCTTTTGCTGAGATCATTAAGAACTGCATGTCTCAAGATTTCTCATGGAAGGGACCTGCTAAGAAGTGGGAAGAGGTGCTGCTAAGTTTGGGTGTTGCTTACAGCGAACCTGGACTAGATGGTGATGGTGAGGAAATTGCACCCCTCTCGAAGGAAAATGTCGCAACGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000271 GO:0003674 GO:0003824 GO:0004373 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0008194 GO:0009011 GO:0009058 GO:0009059 GO:0009250 GO:0009501 GO:0009507 GO:0009536 GO:0009987 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017076 GO:0019252 GO:0019863 GO:0019865 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033692 GO:0034637 GO:0034645 GO:0035251 GO:0036094 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043531 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0046527 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Glyco_transf_5 Glycos_transf_1

Protein Analysis

606

Amino Acids

66.27

Weight (kDa)

7.57

Isoelectric Point (pI)

29.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_5	PF08323	80 - 339	4e-64	Starch synthase catalytic domain
GT4-conflict	PF20706	370 - 570	6.6e-09	Family 4 Glycosyltransferase in conflict systems
Glycos_transf_1	PF00534	391 - 517	8.7e-17	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	396 - 543	1.1e-15	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32900
fragaria_vesca	FvH4_5g10580 FvH4_5g10580 FvH4_5g10580 FvH4_5g10580 FvH4_5g10580 FvH4_5g10580 FvH4_7g17630 FvH4_7g17630 FvH4_7g17630 FvH4_7g17630
malus_domestica	MD06G1122100.v1.1 MD07G1159300.v1.1 MD14G1138500.v1.1
prunus_persica	Prupe.2G197400_v2.0.a1 Prupe.2G197400_v2.0.a1 Prupe.2G197400_v2.0.a1 Prupe.5G132800_v2.0.a1 Prupe.5G132800_v2.0.a1
pyrus_communis	pycom01g11240 pycom06g11320 pycom07g15590 pycom14g11360
rosa_chinensis	RchiOBHm_Chr1g0361061 RchiOBHm_Chr7g0187571
rosa_laevigata	RLG00000004770 RLG00000027751
rosa_multiflora	Rmu_co8027448.1_g000001 Rmu_sc0000677.1_g000001 Rmu_ssc0000110.1_g000020
rosa_roxburghii	Rroxscaffold_3G00267310 Rroxscaffold_4G00295460
rosa_rugosa	Rorug01G0285200 Rorug06G0482700
rosa_samantha	Rh1AG296600 Rh1BG260900 Rh1CG278200 Rh1DG290900 Rh7AG087600 Rh7BG088900 Rh7CG088100 Rh7DG089800
rosa_wichuraiana	Rw1G026200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1711
AccB1I	GGYRCC	2 cut(s)	333, 607
AccB7I	CCANNNNNTGG	1 cut(s)	687
AccI	GTMKAC	2 cut(s)	1085, 1515
AccII	CGCG	2 cut(s)	358, 809
AciI	CCGC	5 cut(s)	324, 356, 488, 809, 1506
AclI	AACGTT	1 cut(s)	1377
AclWI	GGATC	1 cut(s)	1577
AcoI	YGGCCR	2 cut(s)	321, 1605
AcsI	RAATTY	3 cut(s)	235, 1026, 1370
AdeI	CACNNNGTG	1 cut(s)	340
AfaI	GTAC	3 cut(s)	371, 956, 1596
AfeI	AGCGCT	1 cut(s)	40
AfiI	CCNNNNNNNGG	6 cut(s)	330, 545, 687, 887, 1193, 1798
AgsI	TTSAA	8 cut(s)	21, 145, 184, 981, 998, 1138, 1214, 1561
AjnI	CCWGG	3 cut(s)	591, 1056, 1756
Alw21I	GWGCWC	1 cut(s)	1627
Alw26I	GTCTC	3 cut(s)	311, 1454, 1683
AlwI	GGATC	1 cut(s)	1577
Ama87I	CYCGRG	1 cut(s)	1356
Aor51HI	AGCGCT	1 cut(s)	40
AoxI	GGCC	5 cut(s)	114, 321, 536, 1386, 1605
ApeKI	GCWGC	5 cut(s)	596, 836, 914, 1318, 1726
ApoI	RAATTY	3 cut(s)	235, 1026, 1370
Asp700I	GAANNNNTTC	1 cut(s)	1248
AspA2I	CCTAGG	1 cut(s)	539
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	6 cut(s)	115, 263, 536, 650, 1387, 1700
AsuHPI	GGTGA	5 cut(s)	345, 476, 560, 1781, 1787
AsuII	TTCGAA	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	1356
AvaII	GGWCC	3 cut(s)	263, 650, 1700
AvrII	CCTAGG	1 cut(s)	539
BaeGI	GKGCMC	1 cut(s)	336
BaeI	ACNNNNGTAYC	2 cut(s)	378, 411
BalI	TGGCCA	1 cut(s)	1607
BanI	GGYRCC	2 cut(s)	333, 607
BanII	GRGCYC	1 cut(s)	1627
Bbv12I	GWGCWC	1 cut(s)	1627
BbvI	GCAGC	5 cut(s)	608, 823, 901, 1330, 1713
BccI	CCATC	4 cut(s)	860, 1543, 1760, 1766
BcgI	CGANNNNNNTGC	2 cut(s)	1776, 1810
BciT130I	CCWGG	3 cut(s)	593, 1058, 1758
BciVI	GTATCC	1 cut(s)	379
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	3 cut(s)	311, 1454, 1683
BfaI	CTAG	3 cut(s)	540, 602, 1763
BfoI	RGCGCY	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	1711
BfuI	GTATCC	1 cut(s)	379
BisI	GCNGC	6 cut(s)	324, 597, 837, 915, 1319, 1727
BlnI	CCTAGG	1 cut(s)	539
BlsI	GCNGC	6 cut(s)	325, 598, 838, 916, 1320, 1728
Bme1390I	CCNGG	3 cut(s)	593, 1058, 1758
Bme18I	GGWCC	3 cut(s)	263, 650, 1700
BmeT110I	CYCGRG	1 cut(s)	1356
BmgT120I	GGNCC	6 cut(s)	115, 263, 536, 650, 1387, 1700
BmiI	GGNNCC	5 cut(s)	117, 335, 609, 1067, 1701
BmrFI	CCNGG	3 cut(s)	593, 1058, 1758
BmsI	GCATC	5 cut(s)	367, 530, 1093, 1111, 1505
Bpu14I	TTCGAA	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	1665
Bsa29I	ATCGAT	1 cut(s)	164
BsaI	GGTCTC	2 cut(s)	311, 1454
BsaJI	CCNNGG	3 cut(s)	266, 539, 790
BsaXI	ACNNNNNCTCC	2 cut(s)	651, 681
Bsc4I	CCNNNNNNNGG	6 cut(s)	330, 545, 687, 887, 1193, 1798
Bse1I	ACTGG	9 cut(s)	283, 692, 881, 908, 1005, 1027, 1169, 1300, 1507
Bse3DI	GCAATG	3 cut(s)	177, 675, 780
BseBI	CCWGG	3 cut(s)	593, 1058, 1758
BseCI	ATCGAT	1 cut(s)	164
BseDI	CCNNGG	3 cut(s)	266, 539, 790
BseGI	GGATG	5 cut(s)	237, 912, 1057, 1126, 1182
BseLI	CCNNNNNNNGG	6 cut(s)	330, 545, 687, 887, 1193, 1798
BseMI	GCAATG	3 cut(s)	177, 675, 780
BseMII	CTCAG	1 cut(s)	1647
BseNI	ACTGG	9 cut(s)	283, 692, 881, 908, 1005, 1027, 1169, 1300, 1507
BseRI	GAGGAG	2 cut(s)	692, 1374
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	5 cut(s)	608, 823, 901, 1330, 1713
BseYI	CCCAGC	1 cut(s)	1427
BsgI	GTGCAG	1 cut(s)	273
Bsh1236I	CGCG	2 cut(s)	358, 809
BshFI	GGCC	5 cut(s)	116, 323, 538, 1388, 1607
BshNI	GGYRCC	2 cut(s)	333, 607
BshVI	ATCGAT	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	1627
BsiHKCI	CYCGRG	1 cut(s)	1356
BsiSI	CCGG	2 cut(s)	1404, 1646
BslFI	GGGAC	2 cut(s)	1306, 1713
BslI	CCNNNNNNNGG	6 cut(s)	330, 545, 687, 887, 1193, 1798
BsmAI	GTCTC	3 cut(s)	311, 1454, 1683
BsmFI	GGGAC	2 cut(s)	1306, 1713
BsmI	GAATGC	2 cut(s)	771, 803
BsnI	GGCC	5 cut(s)	116, 323, 538, 1388, 1607
Bso31I	GGTCTC	2 cut(s)	311, 1454
BsoBI	CYCGRG	1 cut(s)	1356
Bsp119I	TTCGAA	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	336, 1627
Bsp143I	GATC	5 cut(s)	364, 466, 481, 1582, 1659
Bsp19I	CCATGG	1 cut(s)	266
BspACI	CCGC	5 cut(s)	324, 356, 488, 809, 1506
BspANI	GGCC	5 cut(s)	116, 323, 538, 1388, 1607
BspCNI	CTCAG	1 cut(s)	1648
BspDI	ATCGAT	1 cut(s)	164
BspFNI	CGCG	2 cut(s)	358, 809
BspLI	GGNNCC	5 cut(s)	117, 335, 609, 1067, 1701
BspMI	ACCTGC	1 cut(s)	1711
BspPI	GGATC	1 cut(s)	1577
BspQI	GCTCTTC	1 cut(s)	1209
BspT104I	TTCGAA	1 cut(s)	197
BspT107I	GGYRCC	2 cut(s)	333, 607
BspTNI	GGTCTC	2 cut(s)	311, 1454
BsrDI	GCAATG	3 cut(s)	177, 675, 780
BsrI	ACTGG	9 cut(s)	283, 692, 881, 908, 1005, 1027, 1169, 1300, 1507
BssECI	CCNNGG	3 cut(s)	266, 539, 790
BssMI	GATC	5 cut(s)	364, 466, 481, 1582, 1659
BssNAI	GTATAC	1 cut(s)	1086
BssT1I	CCWWGG	3 cut(s)	266, 539, 790
Bst1107I	GTATAC	1 cut(s)	1086
Bst2UI	CCWGG	3 cut(s)	593, 1058, 1758
Bst6I	CTCTTC	2 cut(s)	1209, 1713
BstAPI	GCANNNNNTGC	1 cut(s)	1468
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	114, 834, 1464
BstDEI	CTNAG	6 cut(s)	572, 922, 1628, 1656, 1707, 1730
BstDSI	CCRYGG	1 cut(s)	266
BstENI	CCTNNNNNAGG	2 cut(s)	1191, 1796
BstF5I	GGATG	5 cut(s)	237, 912, 1057, 1126, 1182
BstFNI	CGCG	2 cut(s)	358, 809
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	5 cut(s)	367, 469, 484, 1585, 1662
BstMAI	GTCTC	3 cut(s)	311, 1454, 1683
BstMBI	GATC	5 cut(s)	364, 466, 481, 1582, 1659
BstMWI	GCNNNNNNNGC	7 cut(s)	323, 588, 605, 761, 1151, 1216, 1468
BstNI	CCWGG	3 cut(s)	593, 1058, 1758
BstNSI	RCATGY	2 cut(s)	1466, 1678
BstSCI	CCNGG	3 cut(s)	591, 1056, 1756
BstSLI	GKGCMC	1 cut(s)	336
BstUI	CGCG	2 cut(s)	358, 809
BstV1I	GCAGC	5 cut(s)	608, 823, 901, 1330, 1713
BstZ17I	GTATAC	1 cut(s)	1086
Bsu15I	ATCGAT	1 cut(s)	164
BsuI	GTATCC	1 cut(s)	379
BsuRI	GGCC	5 cut(s)	116, 323, 538, 1388, 1607
BsuTUI	ATCGAT	1 cut(s)	164
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	5 cut(s)	237, 912, 1057, 1126, 1182
BtsI	GCAGTG	2 cut(s)	12, 445
BtsIMutI	CAGTG	6 cut(s)	12, 445, 888, 1119, 1176, 1518
BveI	ACCTGC	1 cut(s)	1711
Cac8I	GCNNGC	3 cut(s)	114, 834, 1464
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	6 cut(s)	115, 263, 536, 650, 1387, 1700
ClaI	ATCGAT	1 cut(s)	164
Csp6I	GTAC	3 cut(s)	370, 955, 1595
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	7 cut(s)	44, 267, 381, 1463, 1675, 1692, 1818
CviQI	GTAC	3 cut(s)	370, 955, 1595
DdeI	CTNAG	6 cut(s)	572, 922, 1628, 1656, 1707, 1730
DpnI	GATC	5 cut(s)	366, 468, 483, 1584, 1661
DpnII	GATC	5 cut(s)	364, 466, 481, 1582, 1659
DraI	TTTAAA	1 cut(s)	844
DraIII	CACNNNGTG	1 cut(s)	340
EaeI	YGGCCR	2 cut(s)	321, 1605
Eam1104I	CTCTTC	2 cut(s)	1209, 1713
EarI	CTCTTC	2 cut(s)	1209, 1713
Ecl136II	GAGCTC	1 cut(s)	1625
Eco130I	CCWWGG	3 cut(s)	266, 539, 790
Eco24I	GRGCYC	1 cut(s)	1627
Eco31I	GGTCTC	2 cut(s)	311, 1454
Eco47I	GGWCC	3 cut(s)	263, 650, 1700
Eco47III	AGCGCT	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	1625
Eco88I	CYCGRG	1 cut(s)	1356
EcoICRI	GAGCTC	1 cut(s)	1625
EcoNI	CCTNNNNNAGG	2 cut(s)	1191, 1796
EcoO109I	RGGNCCY	2 cut(s)	115, 1700
EcoRI	GAATTC	1 cut(s)	1026
EcoRII	CCWGG	3 cut(s)	591, 1056, 1756
EcoT14I	CCWWGG	3 cut(s)	266, 539, 790
EcoT22I	ATGCAT	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	1627
ErhI	CCWWGG	3 cut(s)	266, 539, 790
FaeI	CATG	7 cut(s)	47, 270, 384, 1466, 1678, 1695, 1821
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FaqI	GGGAC	2 cut(s)	1306, 1713
FatI	CATG	7 cut(s)	43, 266, 380, 1462, 1674, 1691, 1817
FauI	CCCGC	2 cut(s)	495, 1499
FauNDI	CATATG	2 cut(s)	655, 1392
FbaI	TGATCA	1 cut(s)	364
FblI	GTMKAC	2 cut(s)	1085, 1515
Fnu4HI	GCNGC	6 cut(s)	324, 597, 837, 915, 1319, 1727
FokI	GGATG	5 cut(s)	244, 919, 1064, 1133, 1169
FriOI	GRGCYC	1 cut(s)	1627
Fsp4HI	GCNGC	6 cut(s)	324, 597, 837, 915, 1319, 1727
FspBI	CTAG	3 cut(s)	540, 602, 1763
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	6 cut(s)	324, 597, 837, 915, 1319, 1727
GsaI	CCCAGC	1 cut(s)	1431
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	5 cut(s)	116, 323, 538, 1388, 1607
HapII	CCGG	2 cut(s)	1404, 1646
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	7 cut(s)	47, 270, 384, 1466, 1678, 1695, 1821
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	2 cut(s)	49, 1074
HindII	GTYRAC	2 cut(s)	49, 1074
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	8 cut(s)	121, 424, 576, 622, 926, 1249, 1423, 1533
HpaI	GTTAAC	1 cut(s)	1074
HpaII	CCGG	2 cut(s)	1404, 1646
HphI	GGTGA	5 cut(s)	345, 476, 560, 1781, 1787
Hpy166II	GTNNAC	6 cut(s)	49, 284, 1074, 1086, 1516, 1591
Hpy188I	TCNGA	9 cut(s)	93, 192, 429, 621, 931, 1017, 1231, 1278, 1548
Hpy188III	TCNNGA	7 cut(s)	497, 602, 648, 940, 985, 1682, 1795
Hpy8I	GTNNAC	6 cut(s)	49, 284, 1074, 1086, 1516, 1591
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	5 cut(s)	1216, 1264, 1523, 1690, 1792
HpyCH4IV	ACGT	5 cut(s)	86, 147, 1377, 1575, 1593
HpyF10VI	GCNNNNNNNGC	7 cut(s)	323, 588, 605, 761, 1151, 1216, 1468
HpyF3I	CTNAG	6 cut(s)	572, 922, 1628, 1656, 1707, 1730
HpySE526I	ACGT	5 cut(s)	86, 147, 1377, 1575, 1593
Hsp92II	CATG	7 cut(s)	47, 270, 384, 1466, 1678, 1695, 1821
HspAI	GCGC	1 cut(s)	39
Ksp22I	TGATCA	1 cut(s)	364
KspAI	GTTAAC	1 cut(s)	1074
Kzo9I	GATC	5 cut(s)	364, 466, 481, 1582, 1659
LguI	GCTCTTC	1 cut(s)	1209
LmnI	GCTCC	3 cut(s)	270, 854, 1406
Lsp1109I	GCAGC	5 cut(s)	608, 823, 901, 1330, 1713
LweI	GCATC	5 cut(s)	367, 530, 1093, 1111, 1505
MaeI	CTAG	3 cut(s)	540, 602, 1763
MaeII	ACGT	5 cut(s)	86, 147, 1377, 1575, 1593
MaeIII	GTNAC	5 cut(s)	10, 394, 1114, 1571, 1615
MalI	GATC	5 cut(s)	366, 468, 483, 1584, 1661
MboI	GATC	5 cut(s)	364, 466, 481, 1582, 1659
MboII	GAAGA	8 cut(s)	57, 433, 674, 969, 1226, 1346, 1349, 1730
MfeI	CAATTG	1 cut(s)	1328
MhlI	GDGCHC	2 cut(s)	336, 1627
MlsI	TGGCCA	1 cut(s)	1607
MluCI	AATT	7 cut(s)	179, 235, 897, 1026, 1328, 1370, 1782
MluNI	TGGCCA	1 cut(s)	1607
MlyI	GAGTC	1 cut(s)	115
Mox20I	TGGCCA	1 cut(s)	1607
Mph1103I	ATGCAT	1 cut(s)	382
MroXI	GAANNNNTTC	1 cut(s)	1248
MscI	TGGCCA	1 cut(s)	1607
MseI	TTAA	6 cut(s)	843, 900, 1073, 1374, 1524, 1665
Msp20I	TGGCCA	1 cut(s)	1607
MspA1I	CMGCKG	2 cut(s)	490, 836
MspI	CCGG	2 cut(s)	1404, 1646
MspR9I	CCNGG	3 cut(s)	593, 1058, 1758
MunI	CAATTG	1 cut(s)	1328
Mva1269I	GAATGC	2 cut(s)	771, 803
MvaI	CCWGG	3 cut(s)	593, 1058, 1758
MvnI	CGCG	2 cut(s)	358, 809
MwoI	GCNNNNNNNGC	7 cut(s)	323, 588, 605, 761, 1151, 1216, 1468
NcoI	CCATGG	1 cut(s)	266
NdeI	CATATG	2 cut(s)	655, 1392
NdeII	GATC	5 cut(s)	364, 466, 481, 1582, 1659
NlaIII	CATG	7 cut(s)	47, 270, 384, 1466, 1678, 1695, 1821
NlaIV	GGNNCC	5 cut(s)	117, 335, 609, 1067, 1701
NmuCI	GTSAC	3 cut(s)	10, 1114, 1571
NsiI	ATGCAT	1 cut(s)	382
NspI	RCATGY	2 cut(s)	1466, 1678
NspV	TTCGAA	1 cut(s)	197
PaeI	GCATGC	1 cut(s)	1466
PaeR7I	CTCGAG	1 cut(s)	1356
PciSI	GCTCTTC	1 cut(s)	1209
PcsI	WCGNNNNNNNCGW	1 cut(s)	1572
PctI	GAATGC	2 cut(s)	771, 803
PdmI	GAANNNNTTC	1 cut(s)	1248
PfeI	GAWTC	7 cut(s)	424, 576, 622, 926, 1249, 1423, 1533
PflFI	GACNNNGTC	1 cut(s)	935
PflMI	CCANNNNNTGG	1 cut(s)	687
PfoI	TCCNGGA	1 cut(s)	1056
PkrI	GCNGC	6 cut(s)	325, 598, 838, 916, 1320, 1728
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PpuMI	RGGWCCY	1 cut(s)	1700
Psp124BI	GAGCTC	1 cut(s)	1627
Psp1406I	AACGTT	1 cut(s)	1377
Psp5II	RGGWCCY	1 cut(s)	1700
Psp6I	CCWGG	3 cut(s)	591, 1056, 1756
PspFI	CCCAGC	1 cut(s)	1427
PspGI	CCWGG	3 cut(s)	591, 1056, 1756
PspN4I	GGNNCC	5 cut(s)	117, 335, 609, 1067, 1701
PspPI	GGNCC	6 cut(s)	115, 263, 536, 650, 1387, 1700
PspPPI	RGGWCCY	1 cut(s)	1700
PspXI	VCTCGAGB	1 cut(s)	1356
PsyI	GACNNNGTC	1 cut(s)	935
PvuII	CAGCTG	1 cut(s)	836
RsaI	GTAC	3 cut(s)	371, 956, 1596
RsaNI	GTAC	3 cut(s)	370, 955, 1595
SacI	GAGCTC	1 cut(s)	1627
SapI	GCTCTTC	1 cut(s)	1209
SaqAI	TTAA	6 cut(s)	843, 900, 1073, 1374, 1524, 1665
SatI	GCNGC	6 cut(s)	324, 597, 837, 915, 1319, 1727
Sau3AI	GATC	5 cut(s)	364, 466, 481, 1582, 1659
Sau96I	GGNCC	6 cut(s)	115, 263, 536, 650, 1387, 1700
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	3 cut(s)	593, 1058, 1758
SduI	GDGCHC	2 cut(s)	336, 1627
SfaNI	GCATC	5 cut(s)	367, 530, 1093, 1111, 1505
Sfr274I	CTCGAG	1 cut(s)	1356
SfuI	TTCGAA	1 cut(s)	197
SinI	GGWCC	3 cut(s)	263, 650, 1700
SlaI	CTCGAG	1 cut(s)	1356
SmlI	CTYRAG	2 cut(s)	1356, 1680
SmoI	CTYRAG	2 cut(s)	1356, 1680
SphI	GCATGC	1 cut(s)	1466
Sse9I	AATT	7 cut(s)	179, 235, 897, 1026, 1328, 1370, 1782
SsiI	CCGC	5 cut(s)	324, 356, 488, 809, 1506
SspI	AATATT	1 cut(s)	641
SspMI	CTAG	3 cut(s)	540, 602, 1763
SstI	GAGCTC	1 cut(s)	1627
StyD4I	CCNGG	3 cut(s)	591, 1056, 1756
StyI	CCWWGG	3 cut(s)	266, 539, 790
TaiI	ACGT	5 cut(s)	89, 150, 1380, 1578, 1596
TaqI	TCGA	8 cut(s)	164, 197, 498, 524, 984, 1357, 1566, 1796
TasI	AATT	7 cut(s)	179, 235, 897, 1026, 1328, 1370, 1782
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	7 cut(s)	424, 576, 622, 926, 1249, 1423, 1533
Tru1I	TTAA	6 cut(s)	843, 900, 1073, 1374, 1524, 1665
Tru9I	TTAA	6 cut(s)	843, 900, 1073, 1374, 1524, 1665
TscAI	CASTG	6 cut(s)	19, 452, 888, 1119, 1176, 1525
TseFI	GTSAC	3 cut(s)	10, 1114, 1571
TseI	GCWGC	5 cut(s)	596, 836, 914, 1318, 1726
Tsp45I	GTSAC	3 cut(s)	10, 1114, 1571
TspDTI	ATGAA	6 cut(s)	248, 664, 850, 923, 1189, 1249
TspGWI	ACGGA	2 cut(s)	575, 1133
TspRI	CASTG	6 cut(s)	19, 452, 888, 1119, 1176, 1525
Tth111I	GACNNNGTC	1 cut(s)	935
Van91I	CCANNNNNTGG	1 cut(s)	687
VpaK11BI	GGWCC	3 cut(s)	263, 650, 1700
XagI	CCTNNNNNAGG	2 cut(s)	1191, 1796
XapI	RAATTY	3 cut(s)	235, 1026, 1370
XbaI	TCTAGA	1 cut(s)	601
XceI	RCATGY	2 cut(s)	1466, 1678
XhoI	CTCGAG	1 cut(s)	1356
XmaJI	CCTAGG	1 cut(s)	539
XmiI	GTMKAC	2 cut(s)	1085, 1515
XmnI	GAANNNNTTC	1 cut(s)	1248
XspI	CTAG	3 cut(s)	540, 602, 1763
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.