Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8027448.1

Orthogroup ID

OG0002240

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 502

Gene Structure 502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8027448.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ctggatgcaaagcctcttttgaaggaggcccttcaagccgaagttgggctgccagtggacagggacatcccattaataggtttcataggtaggctagaagagcagaaaggttcagatattctagcggaagccattccagaattggcaggagagaatttgcaaataatagtccttggaactggcaaaaagtacctggagaagcagattaaacagctggagacaaaatatccgggcatggctgtaggcgtgctgaaattcaatgttccattagcccacatgattattggtggtgctgattttatgttgatcccgagtagatttgaaccatgtggtctcatacagttgcatgccatgagatatggaaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000271 GO:0003674 GO:0003824 GO:0004373 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0008194 GO:0009011 GO:0009058 GO:0009059 GO:0009250 GO:0009501 GO:0009507 GO:0009536 GO:0009569 GO:0009987 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017076 GO:0019252 GO:0019863 GO:0019865 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033692 GO:0034637 GO:0034645 GO:0035251 GO:0036094 GO:0043036 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043531 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046527 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Glyco_transf_5 Glycos_transf_1

Protein Analysis

122

Amino Acids

13.34

Weight (kDa)

5.68

Isoelectric Point (pI)

22.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32900
fragaria_vesca	FvH4_5g10580 FvH4_5g10580 FvH4_5g10580 FvH4_5g10580 FvH4_5g10580 FvH4_5g10580 FvH4_7g17630 FvH4_7g17630 FvH4_7g17630 FvH4_7g17630
malus_domestica	MD06G1122100.v1.1 MD07G1159300.v1.1 MD14G1138500.v1.1
prunus_persica	Prupe.2G197400_v2.0.a1 Prupe.2G197400_v2.0.a1 Prupe.2G197400_v2.0.a1 Prupe.5G132800_v2.0.a1 Prupe.5G132800_v2.0.a1
pyrus_communis	pycom01g11240 pycom06g11320 pycom07g15590 pycom14g11360
rosa_chinensis	RchiOBHm_Chr1g0361061 RchiOBHm_Chr7g0187571
rosa_laevigata	RLG00000004770 RLG00000027751
rosa_multiflora	Rmu_co8027448.1_g000001 Rmu_sc0000677.1_g000001 Rmu_ssc0000110.1_g000020
rosa_roxburghii	Rroxscaffold_3G00267310 Rroxscaffold_4G00295460
rosa_rugosa	Rorug01G0285200 Rorug06G0482700
rosa_samantha	Rh1AG296600 Rh1BG260900 Rh1CG278200 Rh1DG290900 Rh7AG087600 Rh7BG088900 Rh7CG088100 Rh7DG089800
rosa_wichuraiana	Rw1G026200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	1 cut(s)	301
AcsI	RAATTY	2 cut(s)	154, 254
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	2 cut(s)	45, 77
AgsI	TTSAA	4 cut(s)	22, 35, 259, 323
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw26I	GTCTC	2 cut(s)	212, 338
AlwI	GGATC	1 cut(s)	301
Ama87I	CYCGRG	1 cut(s)	310
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	49
ApoI	RAATTY	2 cut(s)	154, 254
AseI	ATTAAT	1 cut(s)	74
Asp700I	GAANNNNTTC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	231
AvaI	CYCGRG	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	36
BciT130I	CCWGG	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	2 cut(s)	212, 338
BfaI	CTAG	2 cut(s)	95, 122
BfmI	CTRYAG	1 cut(s)	240
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
Bme1390I	CCNGG	2 cut(s)	194, 231
BmeT110I	CYCGRG	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	194, 231
BpmI	CTGGAG	2 cut(s)	215, 236
BpuMI	CCSGG	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 77
Bse1I	ACTGG	2 cut(s)	53, 184
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	2 cut(s)	10, 66
BseLI	CCNNNNNNNGG	2 cut(s)	45, 77
BseNI	ACTGG	2 cut(s)	53, 184
BseXI	GCAGC	1 cut(s)	36
BshFI	GGCC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	45, 77
BsmAI	GTCTC	2 cut(s)	212, 338
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	29
Bso31I	GGTCTC	1 cut(s)	338
BsoBI	CYCGRG	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	306
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	1 cut(s)	29
BspPI	GGATC	1 cut(s)	301
BspQI	GCTCTTC	1 cut(s)	93
BspTNI	GGTCTC	1 cut(s)	338
BsrI	ACTGG	2 cut(s)	53, 184
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	248, 348
BstF5I	GGATG	2 cut(s)	10, 66
BstKTI	GATC	1 cut(s)	309
BstMAI	GTCTC	2 cut(s)	212, 338
BstMBI	GATC	1 cut(s)	306
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 100
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	192, 229
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	2 cut(s)	10, 66
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	2 cut(s)	248, 348
Cfr13I	GGNCC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	5 cut(s)	235, 277, 327, 347, 352
CviJI	RGCY	9 cut(s)	13, 29, 38, 49, 94, 131, 214, 239, 272
CviKI_1	RGCY	9 cut(s)	13, 29, 38, 49, 94, 131, 214, 239, 272
CviQI	GTAC	1 cut(s)	190
DpnI	GATC	1 cut(s)	308
DpnII	GATC	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	172
Eco31I	GGTCTC	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	5 cut(s)	238, 280, 330, 350, 355
FaiI	YATR	9 cut(s)	86, 236, 278, 302, 328, 338, 348, 353, 360
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	5 cut(s)	234, 276, 326, 346, 351
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	2 cut(s)	17, 53
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	2 cut(s)	95, 122
GluI	GCNGC	1 cut(s)	50
GsuI	CTGGAG	2 cut(s)	215, 236
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	5 cut(s)	238, 280, 330, 350, 355
HpaII	CCGG	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	115
Hpy188III	TCNNGA	2 cut(s)	137, 310
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	16, 41
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4V	TGCA	3 cut(s)	8, 160, 346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 100
Hsp92II	CATG	5 cut(s)	238, 280, 330, 350, 355
Kzo9I	GATC	1 cut(s)	306
LguI	GCTCTTC	1 cut(s)	93
LpnPI	CCDG	9 cut(s)	46, 66, 132, 150, 165, 179, 200, 206, 243
Lsp1109I	GCAGC	1 cut(s)	36
MaeI	CTAG	2 cut(s)	95, 122
MalI	GATC	1 cut(s)	308
MboI	GATC	1 cut(s)	306
MboII	GAAGA	1 cut(s)	110
MluCI	AATT	3 cut(s)	140, 154, 254
MnlI	CCTC	2 cut(s)	19, 24
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	2 cut(s)	74, 207
MspA1I	CMGCKG	1 cut(s)	214
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	194, 231
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	2 cut(s)	35, 100
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	1 cut(s)	306
NlaIII	CATG	5 cut(s)	238, 280, 330, 350, 355
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PciSI	GCTCTTC	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	51
PshBI	ATTAAT	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	214
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	74, 207
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	1 cut(s)	306
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	2 cut(s)	194, 231
SetI	ASST	5 cut(s)	82, 91, 112, 195, 216
SfcI	CTRYAG	1 cut(s)	240
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	3 cut(s)	140, 154, 254
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	2 cut(s)	95, 122
StyD4I	CCNGG	2 cut(s)	192, 229
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	342
TasI	AATT	3 cut(s)	140, 154, 254
Tru1I	TTAA	2 cut(s)	74, 207
Tru9I	TTAA	2 cut(s)	74, 207
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	60
VspI	ATTAAT	1 cut(s)	74
XapI	RAATTY	2 cut(s)	154, 254
XceI	RCATGY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	2 cut(s)	139, 281
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	2 cut(s)	95, 122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.