pycom01g13920

IQ-DOMAIN 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0012650
Physical Location & Seq
Forward (+)
14247401 .. 14249582
2182 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1380 bp
ATGGGGAGGAAAGGGAGTTGGTTTTCTACACTCAAGAAAGCCCTCACCCTTGATCCAAAGGAAAATAAAGATCAGAAGACTCACAAGTCAAAGAAATGGTTTGGGAAGTACAAGAACGAGGATGCGGTATCTTCCTGCGAAGAAACCGCATTGGTTATCCCTGCCCCCGCCCCTGCTCCTGCCCCAGCTAGTACCCCTACCCACCCTCCTCCTCCGACCCCGCCTCCAAAAGAAGATGTTGAGTTAGCTGAGGCTGAGAATGCACAGAACAAACATGCTTACTCTGTGGCACTTGCCACTGCCGTGGCTGCAGAGGCAGCTGTGGCTGCTGTTCAGGCTGCCGCAGAGGTTGTTCGCCTTACAGCTGTGCCCATGCCCCGTTACACCAGAAAGTCGATGCAGGAGGCTGCAGCTATCAAGATTCAGACTGCTTTCCGAGGGCACTTGGCAAGAAGGGCGTTACGAGCTTTGAGGGGGTTGGTGAGGTTGAAATCATTGATAGAGGGCCAATCTGTTAAACGACAAGCAACTACCACATTAAGATGCATGCAGACTGTTGCTCATGTGCAGTCTCAGATTCGTGCAAGGAGGATTAGAATGTCTGAGGAGAATCAGGCACTTCAGCGACAGCTCCAACAGAAACAAGAGAAAGAGCTTGAGAAACTCAAAGCTTCTAAAATGTGGAAGAACTCTCCGAAATCTGAACACCCGACCTTTATGGACCCCAGCAATCCCCACTGGGGTTGGAGTTGGTTGGAGCGATGGATGGCTGCAAGGCCATGGGAGAGCCGAAGTACAGCAGACTTCAATGACCGGGCCTCCATGAGGAGTGCTGCAAGCCGTGCCTCCATGTCTGTGGGGGAAATCACCAAAGCTTATGCTCTTCGTGATAAGCCTTCTCCTAGGACCCCTACTGCCCTAAGATCAAGCAGGCCTTCGAGTCGCATATCCCCTTCAACTCCTCTCTCCAAAGCACCATCGTCCGCATCAGTAACCAGGAGAACCCCAAGAGGAAATGGTCGGGGTGGAGATGAGGACTCCAGGAGAACGCTAAGCATCCAGTCAGAACGCTTCAACAGGAGGCATAGCATGGCAGGATTTTCCGTCAGAGCTGACGAGAGCCTTGCAAGCTCGCCTTCGGTTCAAAATTACAGGACACCCACGAAACCAACAAAGGCCAGGTCGAGGTTGGCAACCCTAAACTCAAACCAGTCAGAGAAGAACGGAACACCATCAGAGAAAGGATCAGTGACGTCTGTAAAGAAGCAGCTGTCATTCGCTGCTTCCCCGGCTGGACCAAGGAGACACTCCGGTCCTCTTAGATACGATTCTAGCTCCATTAAAGGCACTCCAGTGCACGCGAGGAAAGGCAGCAGGTAG

Protein Analysis

460

Amino Acids

50.53

Weight (kDa)

10.91

Isoelectric Point (pI)

65.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IQ PF00612 136 - 155 6e-06 IQ calmodulin-binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 85, 1311
AatII GACGTC 1 cut(s) 1256
Acc36I ACCTGC 1 cut(s) 1365
AccII CGCG 1 cut(s) 1361
AciI CCGC 6 cut(s) 125, 147, 168, 221, 342, 984
AclWI GGATC 2 cut(s) 47, 1252
AcuI CTGAAG 1 cut(s) 605
AcyI GRCGYC 1 cut(s) 1253
AfaI GTAC 3 cut(s) 110, 193, 796
AfiI CCNNNNNNNGG 3 cut(s) 740, 825, 1185
AgsI TTSAA 5 cut(s) 490, 808, 957, 1075, 1145
AjnI CCWGG 3 cut(s) 995, 1040, 1178
AleI CACNNNNGTG 2 cut(s) 302, 1352
Alw21I GWGCWC 1 cut(s) 1359
Alw26I GTCTC 2 cut(s) 576, 1297
Alw44I GTGCAC 1 cut(s) 1355
AlwI GGATC 2 cut(s) 47, 1252
AoxI GGCC 5 cut(s) 505, 776, 816, 932, 1176
ApaLI GTGCAC 1 cut(s) 1355
ArsI GACNNNNNNTTYG 2 cut(s) 1166, 1198
AspA2I CCTAGG 1 cut(s) 902
AspS9I GGNCC 6 cut(s) 505, 721, 816, 906, 1295, 1313
AsuC2I CCSGG 2 cut(s) 815, 1289
AsuHPI GGTGA 3 cut(s) 37, 493, 859
AvaII GGWCC 4 cut(s) 721, 906, 1295, 1313
AvrII CCTAGG 1 cut(s) 902
BaeGI GKGCMC 3 cut(s) 372, 444, 1359
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 1359
BbvCI CCTCAGC 1 cut(s) 249
BccI CCATC 4 cut(s) 756, 760, 985, 1240
BceAI ACGGC 2 cut(s) 287, 825
BcgI CGANNNNNNTGC 2 cut(s) 1106, 1140
BciT130I CCWGG 3 cut(s) 997, 1042, 1180
BcnI CCSGG 2 cut(s) 815, 1289
BcoDI GTCTC 2 cut(s) 576, 1297
BfaI CTAG 3 cut(s) 189, 903, 1332
BfmI CTRYAG 2 cut(s) 309, 408
BfuAI ACCTGC 1 cut(s) 1365
BlnI CCTAGG 1 cut(s) 902
BlpI GCTNAGC 1 cut(s) 1052
Bme1390I CCNGG 5 cut(s) 815, 997, 1042, 1180, 1289
Bme18I GGWCC 4 cut(s) 721, 906, 1295, 1313
BmgT120I GGNCC 6 cut(s) 505, 721, 816, 906, 1295, 1313
BmiI GGNNCC 2 cut(s) 723, 908
BmrFI CCNGG 5 cut(s) 815, 997, 1042, 1180, 1289
BmrI ACTGGG 1 cut(s) 748
BmsI GCATC 5 cut(s) 112, 387, 533, 995, 1065
BmuI ACTGGG 1 cut(s) 748
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 2 cut(s) 1024, 1335
Bpu10I CCTNAGC 1 cut(s) 249
Bpu1102I GCTNAGC 1 cut(s) 1052
BpuEI CTTGAG 2 cut(s) 17, 677
BpuMI CCSGG 2 cut(s) 815, 1289
BsaHI GRCGYC 1 cut(s) 1253
BsaJI CCNNGG 6 cut(s) 303, 436, 779, 902, 1287, 1298
BsaWI WCCGGW 1 cut(s) 1310
BsaXI ACNNNNNCTCC 6 cut(s) 190, 208, 220, 238, 803, 833
Bsc4I CCNNNNNNNGG 3 cut(s) 740, 825, 1185
Bse1I ACTGG 4 cut(s) 743, 1060, 1210, 1352
BseBI CCWGG 3 cut(s) 997, 1042, 1180
BseDI CCNNGG 6 cut(s) 303, 436, 779, 902, 1287, 1298
BseGI GGATG 3 cut(s) 127, 771, 1056
BseLI CCNNNNNNNGG 3 cut(s) 740, 825, 1185
BseMII CTCAG 4 cut(s) 240, 246, 587, 594
BseNI ACTGG 4 cut(s) 743, 1060, 1210, 1352
BseRI GAGGAG 5 cut(s) 198, 201, 620, 841, 951
BseSI GKGCMC 3 cut(s) 372, 444, 1359
BseYI CCCAGC 2 cut(s) 184, 725
BsgI GTGCAG 1 cut(s) 587
Bsh1236I CGCG 1 cut(s) 1361
BshFI GGCC 5 cut(s) 507, 778, 818, 934, 1178
BsiHKAI GWGCWC 1 cut(s) 1359
BsiSI CCGG 3 cut(s) 814, 1289, 1311
BslI CCNNNNNNNGG 3 cut(s) 740, 825, 1185
BsmAI GTCTC 2 cut(s) 576, 1297
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 5 cut(s) 507, 778, 818, 934, 1178
Bsp1286I GDGCHC 3 cut(s) 372, 444, 1359
Bsp143I GATC 4 cut(s) 52, 70, 923, 1244
Bsp1720I GCTNAGC 1 cut(s) 1052
Bsp19I CCATGG 1 cut(s) 779
BspACI CCGC 6 cut(s) 125, 147, 168, 221, 342, 984
BspANI GGCC 5 cut(s) 507, 778, 818, 934, 1178
BspCNI CTCAG 4 cut(s) 241, 247, 586, 595
BspFNI CGCG 1 cut(s) 1361
BspLI GGNNCC 2 cut(s) 723, 908
BspMAI CTGCAG 2 cut(s) 313, 412
BspMI ACCTGC 1 cut(s) 1365
BspPI GGATC 2 cut(s) 47, 1252
BspQI GCTCTTC 1 cut(s) 888
BsrI ACTGG 4 cut(s) 743, 1060, 1210, 1352
BssECI CCNNGG 6 cut(s) 303, 436, 779, 902, 1287, 1298
BssMI GATC 4 cut(s) 52, 70, 923, 1244
BssNI GRCGYC 1 cut(s) 1253
BssT1I CCWWGG 3 cut(s) 779, 902, 1298
Bst2UI CCWGG 3 cut(s) 997, 1042, 1180
Bst4CI ACNGT 1 cut(s) 556
Bst6I CTCTTC 1 cut(s) 888
BstACI GRCGYC 1 cut(s) 1253
BstAPI GCANNNNNTGC 1 cut(s) 842
BstC8I GCNNGC 6 cut(s) 548, 838, 932, 1129, 1133, 1359
BstDEI CTNAG 7 cut(s) 249, 255, 573, 603, 920, 1052, 1319
BstDSI CCRYGG 2 cut(s) 303, 779
BstENI CCTNNNNNAGG 1 cut(s) 823
BstF5I GGATG 3 cut(s) 127, 771, 1056
BstFNI CGCG 1 cut(s) 1361
BstKTI GATC 4 cut(s) 55, 73, 926, 1247
BstMAI GTCTC 2 cut(s) 576, 1297
BstMBI GATC 4 cut(s) 52, 70, 923, 1244
BstNI CCWGG 3 cut(s) 997, 1042, 1180
BstNSI RCATGY 2 cut(s) 278, 550
BstSCI CCNGG 5 cut(s) 813, 995, 1040, 1178, 1287
BstSFI CTRYAG 2 cut(s) 309, 408
BstSLI GKGCMC 3 cut(s) 372, 444, 1359
BstUI CGCG 1 cut(s) 1361
BstV2I GAAGAC 1 cut(s) 83
BstXI CCANNNNNNTGG 2 cut(s) 304, 856
BsuRI GGCC 5 cut(s) 507, 778, 818, 934, 1178
BtgI CCRYGG 2 cut(s) 303, 779
BtgZI GCGATG 1 cut(s) 775
BtsCI GGATG 3 cut(s) 127, 771, 1056
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 4 cut(s) 297, 736, 1254, 1359
BveI ACCTGC 1 cut(s) 1365
Cac8I GCNNGC 6 cut(s) 548, 838, 932, 1129, 1133, 1359
Cfr13I GGNCC 6 cut(s) 505, 721, 816, 906, 1295, 1313
Csp6I GTAC 3 cut(s) 109, 192, 795
CspCI CAANNNNNGTGG 2 cut(s) 725, 760
CviAII CATG 8 cut(s) 275, 373, 547, 563, 780, 823, 850, 1090
CviQI GTAC 3 cut(s) 109, 192, 795
DdeI CTNAG 7 cut(s) 249, 255, 573, 603, 920, 1052, 1319
DpnI GATC 4 cut(s) 54, 72, 925, 1246
DpnII GATC 4 cut(s) 52, 70, 923, 1244
DrdI GACNNNNNNGTC 2 cut(s) 85, 1311
DseDI GACNNNNNNGTC 2 cut(s) 85, 1311
Eam1104I CTCTTC 1 cut(s) 888
EarI CTCTTC 1 cut(s) 888
Eco130I CCWWGG 3 cut(s) 779, 902, 1298
Eco147I AGGCCT 1 cut(s) 934
Eco47I GGWCC 4 cut(s) 721, 906, 1295, 1313
Eco57I CTGAAG 1 cut(s) 605
EcoNI CCTNNNNNAGG 1 cut(s) 823
EcoO109I RGGNCCY 1 cut(s) 906
EcoRII CCWGG 3 cut(s) 995, 1040, 1178
EcoT14I CCWWGG 3 cut(s) 779, 902, 1298
EcoT22I ATGCAT 1 cut(s) 548
ErhI CCWWGG 3 cut(s) 779, 902, 1298
FaeI CATG 8 cut(s) 278, 376, 550, 566, 783, 826, 853, 1093
FalI AAGNNNNNCTT 4 cut(s) 919, 951, 1120, 1152
FatI CATG 8 cut(s) 274, 372, 546, 562, 779, 822, 849, 1089
FauI CCCGC 2 cut(s) 175, 228
FokI GGATG 3 cut(s) 134, 778, 1043
FspBI CTAG 3 cut(s) 189, 903, 1332
GsaI CCCAGC 2 cut(s) 188, 729
GsuI CTGGAG 2 cut(s) 1024, 1335
HaeIII GGCC 5 cut(s) 507, 778, 818, 934, 1178
HapII CCGG 3 cut(s) 814, 1289, 1311
Hin1I GRCGYC 1 cut(s) 1253
Hin1II CATG 8 cut(s) 278, 376, 550, 566, 783, 826, 853, 1093
HindIII AAGCTT 2 cut(s) 669, 873
HinfI GANTC 7 cut(s) 79, 421, 577, 610, 940, 1037, 1328
HpaII CCGG 3 cut(s) 814, 1289, 1311
HphI GGTGA 3 cut(s) 37, 493, 859
Hpy166II GTNNAC 1 cut(s) 1357
Hpy188III TCNNGA 3 cut(s) 34, 418, 887
Hpy8I GTNNAC 1 cut(s) 1357
HpyAV CCTTC 5 cut(s) 447, 906, 945, 963, 1146
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4IV ACGT 1 cut(s) 1253
HpyF3I CTNAG 7 cut(s) 249, 255, 573, 603, 920, 1052, 1319
HpySE526I ACGT 1 cut(s) 1253
Hsp92I GRCGYC 1 cut(s) 1253
Hsp92II CATG 8 cut(s) 278, 376, 550, 566, 783, 826, 853, 1093
Kzo9I GATC 4 cut(s) 52, 70, 923, 1244
LguI GCTCTTC 1 cut(s) 888
LmnI GCTCC 4 cut(s) 181, 636, 757, 1340
LweI GCATC 5 cut(s) 112, 387, 533, 995, 1065
MaeI CTAG 3 cut(s) 189, 903, 1332
MaeII ACGT 1 cut(s) 1253
MaeIII GTNAC 4 cut(s) 380, 459, 991, 1249
MalI GATC 4 cut(s) 54, 72, 925, 1246
MboI GATC 4 cut(s) 52, 70, 923, 1244
MboII GAAGA 7 cut(s) 88, 123, 152, 245, 697, 875, 1231
MhlI GDGCHC 3 cut(s) 372, 444, 1359
MluCI AATT 1 cut(s) 1147
MlyI GAGTC 3 cut(s) 73, 949, 1031
MmeI TCCRAC 4 cut(s) 239, 658, 725, 735
Mph1103I ATGCAT 1 cut(s) 548
MseI TTAA 3 cut(s) 516, 539, 1341
MslI CAYNNNNRTG 4 cut(s) 302, 541, 854, 1352
MspA1I CMGCKG 3 cut(s) 320, 365, 1270
MspI CCGG 3 cut(s) 814, 1289, 1311
MspR9I CCNGG 5 cut(s) 815, 997, 1042, 1180, 1289
Mva1269I GAATGC 1 cut(s) 265
MvaI CCWGG 3 cut(s) 997, 1042, 1180
MvnI CGCG 1 cut(s) 1361
NciI CCSGG 2 cut(s) 815, 1289
NcoI CCATGG 1 cut(s) 779
NdeII GATC 4 cut(s) 52, 70, 923, 1244
NlaIII CATG 8 cut(s) 278, 376, 550, 566, 783, 826, 853, 1093
NlaIV GGNNCC 2 cut(s) 723, 908
NmuCI GTSAC 1 cut(s) 1249
NsiI ATGCAT 1 cut(s) 548
NspI RCATGY 2 cut(s) 278, 550
OliI CACNNNNGTG 2 cut(s) 302, 1352
PaeI GCATGC 1 cut(s) 550
PceI AGGCCT 1 cut(s) 934
PciSI GCTCTTC 1 cut(s) 888
PctI GAATGC 1 cut(s) 265
PfeI GAWTC 4 cut(s) 421, 577, 610, 1328
PfoI TCCNGGA 1 cut(s) 1040
PleI GAGTC 3 cut(s) 73, 948, 1031
PpsI GAGTC 3 cut(s) 73, 948, 1031
PpuMI RGGWCCY 1 cut(s) 906
Psp5II RGGWCCY 1 cut(s) 906
Psp6I CCWGG 3 cut(s) 995, 1040, 1178
PspFI CCCAGC 2 cut(s) 184, 725
PspGI CCWGG 3 cut(s) 995, 1040, 1178
PspN4I GGNNCC 2 cut(s) 723, 908
PspPI GGNCC 6 cut(s) 505, 721, 816, 906, 1295, 1313
PspPPI RGGWCCY 1 cut(s) 906
PstI CTGCAG 2 cut(s) 313, 412
PvuII CAGCTG 3 cut(s) 320, 365, 1270
RsaI GTAC 3 cut(s) 110, 193, 796
RsaNI GTAC 3 cut(s) 109, 192, 795
RseI CAYNNNNRTG 4 cut(s) 302, 541, 854, 1352
SapI GCTCTTC 1 cut(s) 888
SaqAI TTAA 3 cut(s) 516, 539, 1341
Sau3AI GATC 4 cut(s) 52, 70, 923, 1244
Sau96I GGNCC 6 cut(s) 505, 721, 816, 906, 1295, 1313
SchI GAGTC 3 cut(s) 73, 949, 1031
ScrFI CCNGG 5 cut(s) 815, 997, 1042, 1180, 1289
SduI GDGCHC 3 cut(s) 372, 444, 1359
SfaNI GCATC 5 cut(s) 112, 387, 533, 995, 1065
SfcI CTRYAG 2 cut(s) 309, 408
SinI GGWCC 4 cut(s) 721, 906, 1295, 1313
SmiMI CAYNNNNRTG 4 cut(s) 302, 541, 854, 1352
SmlI CTYRAG 2 cut(s) 32, 656
SmoI CTYRAG 2 cut(s) 32, 656
SphI GCATGC 1 cut(s) 550
Sse9I AATT 1 cut(s) 1147
SseBI AGGCCT 1 cut(s) 934
SsiI CCGC 6 cut(s) 125, 147, 168, 221, 342, 984
SspMI CTAG 3 cut(s) 189, 903, 1332
StuI AGGCCT 1 cut(s) 934
StyD4I CCNGG 5 cut(s) 813, 995, 1040, 1178, 1287
StyI CCWWGG 3 cut(s) 779, 902, 1298
TaaI ACNGT 1 cut(s) 556
TaiI ACGT 1 cut(s) 1256
TaqI TCGA 3 cut(s) 395, 938, 1184
TasI AATT 1 cut(s) 1147
TatI WGTACW 2 cut(s) 108, 794
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 4 cut(s) 421, 577, 610, 1328
Tru1I TTAA 3 cut(s) 516, 539, 1341
Tru9I TTAA 3 cut(s) 516, 539, 1341
TscAI CASTG 4 cut(s) 304, 743, 1254, 1359
TseFI GTSAC 1 cut(s) 1249
Tsp45I GTSAC 1 cut(s) 1249
TspGWI ACGGA 2 cut(s) 1093, 1239
TspRI CASTG 4 cut(s) 304, 743, 1254, 1359
VneI GTGCAC 1 cut(s) 1355
VpaK11BI GGWCC 4 cut(s) 721, 906, 1295, 1313
XagI CCTNNNNNAGG 1 cut(s) 823
XceI RCATGY 2 cut(s) 278, 550
XcmI CCANNNNNNNNNTGG 1 cut(s) 1186
XmaJI CCTAGG 1 cut(s) 902
XspI CTAG 3 cut(s) 189, 903, 1332
ZraI GACGTC 1 cut(s) 1254
Zsp2I ATGCAT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.