pycom01g20370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0014009
Physical Location & Seq
Forward (+)
18788978 .. 18792270
3293 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 903 bp
ATGTCGGCAGCAGCACATGATCTACCTACAATATCCAACGATCCACGGACGATGAAGTGGAACCAGATGACAGGGGAAGAAGAAAATGAGATTTTGAATCAGAAGCCATTTGCTTTGGCTTGGGTTGCTCTTCTGATTCAAATTCCAGTTGAAAAAATGGCGTCGAATTCGAATTTGAATCCGTCGCTGCAGCCTGAGATCGGACCCGACGGCCTTGCTCGCGAGGCTTCTGTCATCACCAACACTGAGAAGATAATCGAGAACGAACAGCTTCAATTAAGAAAATATATTGAAGAAAACTATTCTAAAATTCGTGATGTCGAACGAGAGCTGGCACAGTTGTCAATGGAGATGAAACTCACAGCTGGGCCAAAAAAATCAGCCCTTGAACATTTGAGGAGTAAAATAGAGATGTCAACGGAGAAAATTCATGCCGCCAAGCTGAAGGAAGAACAAGCACGAAAGGTGTGGGAAGCAGCATTACAGGCTGTAAAGGACGAGGAAGCTATCAAGCAGCAGCTATGTGAAGACTTAAACCAACTGGTGCAAGAAAGCAGCAGTTCTCAGTTTACGAGACTGGAGGAGTTGAAAAGACGACTTGAAGCTATGAACCCAAGCAGATCATCAGCTTCCGTTTCTCATGATGGGAAATCAATGGGTCCAGATGCTCCTACAGTTCCGGGATCAAAAGAATCAGGTGGAGTCGCTCAAAACATCCCTAATCCAGGAAATGGTGGAAATGTTTCGGTCGTGAACGGGCACAATCAACAACCTCCGGTTGAGGGAGAAGGAAGGGGAAAGAAGAAAAGTCAGTTCCACGGAAGAGGGAAGGGACTTGGAGCTGTGCCCAAGGGTAGAGGACCTCCTCCGCCGGGATGGACAGGGGCAGGGTTTGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

301

Amino Acids

32.73

Weight (kDa)

6.36

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 77 - 201 1.6e-08 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51840
fragaria_vesca FvH4_7g28720 FvH4_7g28720
malus_domestica MD00G1004200.v1.1 MD01G1193100.v1.1
prunus_persica Prupe.2G287200_v2.0.a1
pyrus_communis pycom01g20370
rosa_chinensis RchiOBHm_Chr1g0376221
rosa_laevigata RLG00000026618
rosa_roxburghii Rroxscaffold_4G00282290
rosa_rugosa Rorug01G0394500 Rorug01G0394600
rosa_samantha Rh1AG406100 Rh1BG369800 Rh1CG382700 Rh1DG399600
rosa_wichuraiana Rw1G036030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 731
AccII CGCG 1 cut(s) 222
AciI CCGC 2 cut(s) 435, 869
AclWI GGATC 2 cut(s) 35, 691
AcsI RAATTY 5 cut(s) 141, 166, 172, 309, 426
AcuI CTGAAG 1 cut(s) 464
AcyI GRCGYC 1 cut(s) 161
AfiI CCNNNNNNNGG 5 cut(s) 200, 725, 731, 782, 872
AgsI TTSAA 9 cut(s) 97, 140, 152, 178, 275, 293, 389, 589, 602
AjnI CCWGG 1 cut(s) 724
AluBI AGCT 9 cut(s) 271, 331, 365, 442, 506, 520, 605, 629, 842
AluI AGCT 9 cut(s) 271, 331, 365, 442, 506, 520, 605, 629, 842
Alw26I GTCTC 1 cut(s) 568
AlwI GGATC 2 cut(s) 35, 691
AoxI GGCC 2 cut(s) 211, 368
ApeKI GCWGC 8 cut(s) 8, 11, 187, 190, 476, 514, 517, 555
ApoI RAATTY 5 cut(s) 141, 166, 172, 309, 426
Asp700I GAANNNNTTC 2 cut(s) 270, 742
AspS9I GGNCC 4 cut(s) 203, 368, 659, 860
AsuC2I CCSGG 2 cut(s) 681, 873
AsuHPI GGTGA 1 cut(s) 229
AsuII TTCGAA 1 cut(s) 170
AvaII GGWCC 3 cut(s) 203, 659, 860
BaeGI GKGCMC 2 cut(s) 762, 849
BarI GAAGNNNNNNTAC 2 cut(s) 465, 497
BbsI GAAGAC 1 cut(s) 534
BbvI GCAGC 8 cut(s) 20, 23, 174, 202, 488, 526, 529, 567
BccI CCATC 2 cut(s) 638, 870
BceAI ACGGC 1 cut(s) 226
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BciT130I CCWGG 1 cut(s) 726
BcnI CCSGG 2 cut(s) 681, 873
BcoDI GTCTC 1 cut(s) 568
BfmI CTRYAG 2 cut(s) 188, 672
BisI GCNGC 9 cut(s) 9, 12, 188, 191, 435, 477, 515, 518, 556
BlsI GCNGC 9 cut(s) 10, 13, 189, 192, 436, 478, 516, 519, 557
Bme1390I CCNGG 3 cut(s) 681, 726, 873
Bme18I GGWCC 3 cut(s) 203, 659, 860
BmgT120I GGNCC 4 cut(s) 203, 368, 659, 860
BmiI GGNNCC 3 cut(s) 62, 205, 660
BmrFI CCNGG 3 cut(s) 681, 726, 873
BmsI GCATC 2 cut(s) 655, 886
BpiI GAAGAC 1 cut(s) 534
BpmI CTGGAG 1 cut(s) 599
Bpu14I TTCGAA 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 681, 873
BsaHI GRCGYC 1 cut(s) 161
BsaJI CCNNGG 3 cut(s) 44, 817, 849
BsaWI WCCGGW 1 cut(s) 775
Bsc4I CCNNNNNNNGG 5 cut(s) 200, 725, 731, 782, 872
Bse1I ACTGG 3 cut(s) 146, 546, 582
BseBI CCWGG 1 cut(s) 726
BseDI CCNNGG 3 cut(s) 44, 817, 849
BseGI GGATG 2 cut(s) 714, 881
BseLI CCNNNNNNNGG 5 cut(s) 200, 725, 731, 782, 872
BseMII CTCAG 3 cut(s) 186, 237, 578
BseNI ACTGG 3 cut(s) 146, 546, 582
BseRI GAGGAG 3 cut(s) 412, 596, 855
BseSI GKGCMC 2 cut(s) 762, 849
BseXI GCAGC 8 cut(s) 20, 23, 174, 202, 488, 526, 529, 567
BseYI CCCAGC 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 222
Bsh1285I CGRYCG 1 cut(s) 750
BshFI GGCC 2 cut(s) 213, 370
BsiEI CGRYCG 1 cut(s) 750
BsiSI CCGG 3 cut(s) 680, 776, 872
BslFI GGGAC 1 cut(s) 846
BslI CCNNNNNNNGG 5 cut(s) 200, 725, 731, 782, 872
BsmAI GTCTC 1 cut(s) 568
BsmFI GGGAC 1 cut(s) 846
BsnI GGCC 2 cut(s) 213, 370
Bsp119I TTCGAA 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 762, 849
Bsp143I GATC 5 cut(s) 19, 40, 198, 620, 683
Bsp68I TCGCGA 1 cut(s) 222
BspACI CCGC 2 cut(s) 435, 869
BspANI GGCC 2 cut(s) 213, 370
BspCNI CTCAG 3 cut(s) 187, 238, 577
BspFNI CGCG 1 cut(s) 222
BspHI TCATGA 1 cut(s) 640
BspLI GGNNCC 3 cut(s) 62, 205, 660
BspMAI CTGCAG 1 cut(s) 192
BspPI GGATC 2 cut(s) 35, 691
BspQI GCTCTTC 1 cut(s) 135
BspT104I TTCGAA 1 cut(s) 170
BsrI ACTGG 3 cut(s) 146, 546, 582
BssECI CCNNGG 3 cut(s) 44, 817, 849
BssMI GATC 5 cut(s) 19, 40, 198, 620, 683
BssNI GRCGYC 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 849
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 2 cut(s) 339, 676
Bst6I CTCTTC 2 cut(s) 135, 817
BstACI GRCGYC 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 220, 333
BstDEI CTNAG 4 cut(s) 195, 246, 564, 900
BstDSI CCRYGG 2 cut(s) 44, 817
BstENI CCTNNNNNAGG 1 cut(s) 723
BstF5I GGATG 2 cut(s) 714, 881
BstFNI CGCG 1 cut(s) 222
BstKTI GATC 5 cut(s) 22, 43, 201, 623, 686
BstMAI GTCTC 1 cut(s) 568
BstMBI GATC 5 cut(s) 19, 40, 198, 620, 683
BstMCI CGRYCG 1 cut(s) 750
BstMWI GCNNNNNNNGC 4 cut(s) 125, 219, 224, 485
BstNI CCWGG 1 cut(s) 726
BstSCI CCNGG 3 cut(s) 679, 724, 871
BstSFI CTRYAG 2 cut(s) 188, 672
BstSLI GKGCMC 2 cut(s) 762, 849
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 8 cut(s) 20, 23, 174, 202, 488, 526, 529, 567
BstV2I GAAGAC 1 cut(s) 534
BsuRI GGCC 2 cut(s) 213, 370
BtgI CCRYGG 2 cut(s) 44, 817
BtsCI GGATG 2 cut(s) 714, 881
BtsIMutI CAGTG 1 cut(s) 243
BtuMI TCGCGA 1 cut(s) 222
Cac8I GCNNGC 2 cut(s) 220, 333
CciI TCATGA 1 cut(s) 640
Cfr13I GGNCC 4 cut(s) 203, 368, 659, 860
CseI GACGC 1 cut(s) 150
CviAII CATG 3 cut(s) 17, 431, 641
DdeI CTNAG 4 cut(s) 195, 246, 564, 900
DpnI GATC 5 cut(s) 21, 42, 200, 622, 685
DpnII GATC 5 cut(s) 19, 40, 198, 620, 683
Eam1104I CTCTTC 2 cut(s) 135, 817
EarI CTCTTC 2 cut(s) 135, 817
EciI GGCGGA 1 cut(s) 858
Eco130I CCWWGG 1 cut(s) 849
Eco47I GGWCC 3 cut(s) 203, 659, 860
Eco57I CTGAAG 1 cut(s) 464
EcoNI CCTNNNNNAGG 1 cut(s) 723
EcoO109I RGGNCCY 1 cut(s) 860
EcoRI GAATTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 724
EcoT14I CCWWGG 1 cut(s) 849
ErhI CCWWGG 1 cut(s) 849
FaeI CATG 3 cut(s) 20, 434, 644
FaiI YATR 6 cut(s) 18, 288, 432, 523, 608, 642
FaqI GGGAC 1 cut(s) 846
FatI CATG 3 cut(s) 16, 430, 640
Fnu4HI GCNGC 9 cut(s) 9, 12, 188, 191, 435, 477, 515, 518, 556
FokI GGATG 2 cut(s) 701, 888
Fsp4HI GCNGC 9 cut(s) 9, 12, 188, 191, 435, 477, 515, 518, 556
GluI GCNGC 9 cut(s) 9, 12, 188, 191, 435, 477, 515, 518, 556
GsaI CCCAGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 599
HaeIII GGCC 2 cut(s) 213, 370
HapII CCGG 3 cut(s) 680, 776, 872
HgaI GACGC 1 cut(s) 150
Hin1I GRCGYC 1 cut(s) 161
Hin1II CATG 3 cut(s) 20, 434, 644
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HinfI GANTC 5 cut(s) 97, 136, 178, 692, 702
HpaII CCGG 3 cut(s) 680, 776, 872
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 3 cut(s) 417, 570, 754
Hpy188I TCNGA 3 cut(s) 102, 135, 203
Hpy188III TCNNGA 6 cut(s) 221, 259, 314, 641, 662, 751
Hpy8I GTNNAC 3 cut(s) 417, 570, 754
Hpy99I CGWCG 3 cut(s) 166, 187, 212
HpyAV CCTTC 4 cut(s) 439, 782, 786, 823
HpyCH4III ACNGT 2 cut(s) 339, 676
HpyCH4V TGCA 2 cut(s) 190, 547
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 219, 224, 485
HpyF3I CTNAG 4 cut(s) 195, 246, 564, 900
Hsp92I GRCGYC 1 cut(s) 161
Hsp92II CATG 3 cut(s) 20, 434, 644
Kzo9I GATC 5 cut(s) 19, 40, 198, 620, 683
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 2 cut(s) 673, 839
Lsp1109I GCAGC 8 cut(s) 20, 23, 174, 202, 488, 526, 529, 567
LweI GCATC 2 cut(s) 655, 886
MalI GATC 5 cut(s) 21, 42, 200, 622, 685
MboI GATC 5 cut(s) 19, 40, 198, 620, 683
MboII GAAGA 9 cut(s) 89, 92, 122, 262, 305, 461, 539, 814, 834
MhlI GDGCHC 2 cut(s) 762, 849
MluCI AATT 6 cut(s) 141, 166, 172, 275, 309, 426
MlyI GAGTC 1 cut(s) 711
MmeI TCCRAC 1 cut(s) 60
MroXI GAANNNNTTC 2 cut(s) 270, 742
MseI TTAA 2 cut(s) 278, 533
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 3 cut(s) 680, 776, 872
MspR9I CCNGG 3 cut(s) 681, 726, 873
MvaI CCWGG 1 cut(s) 726
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 4 cut(s) 125, 219, 224, 485
NciI CCSGG 2 cut(s) 681, 873
NdeII GATC 5 cut(s) 19, 40, 198, 620, 683
NlaIII CATG 3 cut(s) 20, 434, 644
NlaIV GGNNCC 3 cut(s) 62, 205, 660
NruI TCGCGA 1 cut(s) 222
NspV TTCGAA 1 cut(s) 170
PagI TCATGA 1 cut(s) 640
PciSI GCTCTTC 1 cut(s) 135
PdmI GAANNNNTTC 2 cut(s) 270, 742
PfeI GAWTC 4 cut(s) 97, 136, 178, 692
PflMI CCANNNNNTGG 1 cut(s) 731
PfoI TCCNGGA 2 cut(s) 679, 724
PkrI GCNGC 9 cut(s) 10, 13, 189, 192, 436, 478, 516, 519, 557
PleI GAGTC 1 cut(s) 710
PpsI GAGTC 1 cut(s) 710
PpuMI RGGWCCY 1 cut(s) 860
Psp5II RGGWCCY 1 cut(s) 860
Psp6I CCWGG 1 cut(s) 724
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 1 cut(s) 724
PspN4I GGNNCC 3 cut(s) 62, 205, 660
PspPI GGNCC 4 cut(s) 203, 368, 659, 860
PspPPI RGGWCCY 1 cut(s) 860
PstI CTGCAG 1 cut(s) 192
PvuII CAGCTG 1 cut(s) 365
RruI TCGCGA 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 2 cut(s) 278, 533
SatI GCNGC 9 cut(s) 9, 12, 188, 191, 435, 477, 515, 518, 556
Sau3AI GATC 5 cut(s) 19, 40, 198, 620, 683
Sau96I GGNCC 4 cut(s) 203, 368, 659, 860
SchI GAGTC 1 cut(s) 711
ScrFI CCNGG 3 cut(s) 681, 726, 873
SduI GDGCHC 2 cut(s) 762, 849
SfaNI GCATC 2 cut(s) 655, 886
SfcI CTRYAG 2 cut(s) 188, 672
SfuI TTCGAA 1 cut(s) 170
SinI GGWCC 3 cut(s) 203, 659, 860
Sse9I AATT 6 cut(s) 141, 166, 172, 275, 309, 426
SsiI CCGC 2 cut(s) 435, 869
StyD4I CCNGG 3 cut(s) 679, 724, 871
StyI CCWWGG 1 cut(s) 849
TaaI ACNGT 2 cut(s) 339, 676
TaqI TCGA 4 cut(s) 164, 170, 258, 321
TaqII GACCGA 1 cut(s) 736
TasI AATT 6 cut(s) 141, 166, 172, 275, 309, 426
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 4 cut(s) 97, 136, 178, 692
Tru1I TTAA 2 cut(s) 278, 533
Tru9I TTAA 2 cut(s) 278, 533
TscAI CASTG 1 cut(s) 250
TseI GCWGC 8 cut(s) 8, 11, 187, 190, 476, 514, 517, 555
TspDTI ATGAA 4 cut(s) 68, 368, 419, 623
TspGWI ACGGA 5 cut(s) 61, 171, 434, 622, 834
TspRI CASTG 1 cut(s) 250
Van91I CCANNNNNTGG 1 cut(s) 731
VpaK11BI GGWCC 3 cut(s) 203, 659, 860
XagI CCTNNNNNAGG 1 cut(s) 723
XapI RAATTY 5 cut(s) 141, 166, 172, 309, 426
XmnI GAANNNNTTC 2 cut(s) 270, 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.