Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006698

Physical Location & Seq

Genomic Coordinates Reverse (-)

21011768 .. 21014343

Gene Structure 2576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g23810.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGACGATGACGAAGACGAAGGGAAGGATTTCGAGAATTGGAAGCTACGCAATTGCGTCTTCCAAACGAGACGGCCACCACCAACAGCCCTGCATTACCTGCACCACTTTCAACATCCTCGCTCCAATTTACAAGCGCCTCAACCATGACGACCCCGATTGTCGGGAAAGCAATTACAGAGCCTATTGGCTGGCCAGGAATCAAAGGATATTGGATTGTTTGTTGGCTGAGAGATCCTCCATCATTTGTCTTCAGGAGTTCTGGGTCGGCAACGAAGAGCTTGTTGACATTTACGAGAAGAGACTTGGGGATGCTGGTTATATCAATCTCAAACTAGGACGAACCAACAACCGTGGCGATGGTTTGTTGACCGCAGTGCATAAAGACTACTTTAGAGTTGTAAACTATGTAGAGTTGCACTTCAATGATTGTGGTGATCGTGTTGCTCAGTTGTTACATGTGGAATTAGCCACCCCAATTTCGCAGTTTCGAAACAATGATATTCGGCAGGAAATTCTCATTGTGAACACCCACTTGTTATTTCCTCATGACTCGAGTTTGTGTTTAGTTCGACTGCATCAGGTCTACAAAATCCTTCAACATGTAGAATCTTATCAGAAAGATAACAAGCTTAATCCCATGCCGATTATACTCTGCGGTGACTGGAATGGAAGCAAAAGTGGACATGTTTACAAGTTTCTTCGGTCCCAGAGGTTTGTATCTTCTTATGATACTGCTCATCATTACACCGATGCAGATGCACATAAGTGGGTTAGCCACAGAAACCATCTGGGAAACATATGCGGCGTTGATTTTATATGGCTTCTCAATCCTAATAGATACCGTAAGCTACTAAAAACTAGTTGGAGCGAAGCAGTATTTGACATGTTCAAGTACCAACTACGAAGAGCTTCGCTGACAGAGGCCGATGCCTTTGCCTTTCTAAAGGCTGATAATCCTGGCGATTACATAACCTCTTCAGGTTTCTGTGAAGCACTTCGACAGCTTAACATGACGGGTCATTGCCATGGACTTAGCCTCGAAGAGACAAAGGATTTGTGGGTTCAAGCAGACATAGATGGGAACGGCCTTCTTGATTATATAGAATTTCAGCAGCGAATTTGGTATCCTACGGGGTCAGAGCAGAAGGATGAAAGCGGTAGCGACAGTGACAGTGATTCCAAGGGTATTCAGGAACAAACAATTGGTTTCAGTGTCAAAAACGCGGTGCTCTTCCCTCCTGAAGTGGAGAAAGGAACGTGGCCCGAAGATTACTCTCTTTCCGATCATGCACGACTCACAGTGGTTTTCTCACCAATAAGAATGCCTTGCTCTCAGATGGTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

450

Amino Acids

51.62

Weight (kDa)

6.44

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54130
fragaria_vesca	FvH4_7g33080 FvH4_7g33080 FvH4_7g33080 FvH4_7g33080
malus_domestica	MD01G1230000.v1.1 MD01G1230100.v1.1 MD07G1301900.v1.1
prunus_persica	Prupe.2G320700_v2.0.a1 Prupe.2G320700_v2.0.a1 Prupe.2G320700_v2.0.a1 Prupe.2G320700_v2.0.a1
pyrus_communis	pycom01g23810 pycom07g27500 pycom07g27510
rosa_chinensis	RchiOBHm_Chr1g0383111
rosa_laevigata	RLG00000026129
rosa_multiflora	Rmu_sc0008563.1_g000012
rosa_roxburghii	Rroxscaffold_4G00277580
rosa_rugosa	Rorug01G0438700 Rorug01G0438700
rosa_samantha	Rh1AG464300 Rh1BG421600 Rh1CG435000 Rh1DG454200
rosa_wichuraiana	Rw1G040790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	585
AccII	CGCG	1 cut(s)	1226
AciI	CCGC	5 cut(s)	372, 657, 804, 1158, 1226
AclWI	GGATC	1 cut(s)	228
AcoI	YGGCCR	2 cut(s)	73, 192
AcsI	RAATTY	3 cut(s)	513, 1106, 1119
AcuI	CTGAAG	3 cut(s)	236, 963, 1263
AfaI	GTAC	1 cut(s)	896
AfiI	CCNNNNNNNGG	1 cut(s)	162
AflIII	ACRYGT	4 cut(s)	457, 601, 685, 885
AgsI	TTSAA	5 cut(s)	112, 424, 599, 892, 1067
AhlI	ACTAGT	1 cut(s)	860
AjnI	CCWGG	2 cut(s)	194, 958
AjuI	GAANNNNNNNTTGG	2 cut(s)	1188, 1220
AleI	CACNNNNGTG	1 cut(s)	766
AluBI	AGCT	6 cut(s)	45, 280, 631, 850, 911, 1006
AluI	AGCT	6 cut(s)	45, 280, 631, 850, 911, 1006
Alw21I	GWGCWC	1 cut(s)	1233
Alw26I	GTCTC	3 cut(s)	63, 295, 1040
AlwI	GGATC	1 cut(s)	228
Ama87I	CYCGRG	1 cut(s)	553
AoxI	GGCC	5 cut(s)	73, 192, 924, 1087, 1262
ApeKI	GCWGC	1 cut(s)	1114
ApoI	RAATTY	3 cut(s)	513, 1106, 1119
ArsI	GACNNNNNNTTYG	2 cut(s)	1039, 1071
Asp700I	GAANNNNTTC	3 cut(s)	28, 910, 996
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	705, 1263
AsuHPI	GGTGA	3 cut(s)	446, 671, 1305
AsuII	TTCGAA	1 cut(s)	490
AvaI	CYCGRG	1 cut(s)	553
AvaII	GGWCC	1 cut(s)	705
BalI	TGGCCA	1 cut(s)	194
BbsI	GAAGAC	3 cut(s)	20, 51, 242
Bbv12I	GWGCWC	1 cut(s)	1233
BbvI	GCAGC	1 cut(s)	1126
BccI	CCATC	5 cut(s)	248, 353, 795, 1073, 1333
BceAI	ACGGC	2 cut(s)	88, 1102
BcgI	CGANNNNNNTGC	4 cut(s)	740, 774, 917, 951
BciT130I	CCWGG	2 cut(s)	196, 960
BciVI	GTATCC	1 cut(s)	1137
BcoDI	GTCTC	3 cut(s)	63, 295, 1040
BcuI	ACTAGT	1 cut(s)	860
BfaI	CTAG	2 cut(s)	335, 861
BfoI	RGCGCY	1 cut(s)	139
BfuAI	ACCTGC	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	1137
BisI	GCNGC	2 cut(s)	805, 1115
BlsI	GCNGC	2 cut(s)	806, 1116
Bme1390I	CCNGG	2 cut(s)	196, 960
Bme18I	GGWCC	1 cut(s)	705
BmeT110I	CYCGRG	1 cut(s)	553
BmgT120I	GGNCC	2 cut(s)	705, 1263
BmiI	GGNNCC	2 cut(s)	707, 1344
BmrFI	CCNGG	2 cut(s)	196, 960
BmsI	GCATC	5 cut(s)	301, 586, 742, 748, 919
BpiI	GAAGAC	3 cut(s)	20, 51, 242
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
Bpu14I	TTCGAA	1 cut(s)	490
BsaJI	CCNNGG	3 cut(s)	352, 1027, 1182
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse1I	ACTGG	1 cut(s)	668
Bse3DI	GCAATG	1 cut(s)	1021
BseBI	CCWGG	2 cut(s)	196, 960
BseDI	CCNNGG	3 cut(s)	352, 1027, 1182
BseGI	GGATG	3 cut(s)	114, 316, 1156
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	1021
BseMII	CTCAG	3 cut(s)	219, 461, 1349
BseNI	ACTGG	1 cut(s)	668
BseXI	GCAGC	1 cut(s)	1126
BsgI	GTGCAG	1 cut(s)	85
Bsh1236I	CGCG	1 cut(s)	1226
BshFI	GGCC	5 cut(s)	75, 194, 926, 1089, 1264
BsiHKAI	GWGCWC	1 cut(s)	1233
BsiHKCI	CYCGRG	1 cut(s)	553
BslFI	GGGAC	1 cut(s)	691
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	3 cut(s)	63, 295, 1040
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	691
BsmI	GAATGC	1 cut(s)	1329
BsnI	GGCC	5 cut(s)	75, 194, 926, 1089, 1264
BsoBI	CYCGRG	1 cut(s)	553
Bsp119I	TTCGAA	1 cut(s)	490
Bsp1286I	GDGCHC	1 cut(s)	1233
Bsp143I	GATC	3 cut(s)	233, 436, 1285
Bsp19I	CCATGG	1 cut(s)	1027
BspACI	CCGC	5 cut(s)	372, 657, 804, 1158, 1226
BspANI	GGCC	5 cut(s)	75, 194, 926, 1089, 1264
BspCNI	CTCAG	3 cut(s)	220, 460, 1348
BspFNI	CGCG	1 cut(s)	1226
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	2 cut(s)	707, 1344
BspMI	ACCTGC	1 cut(s)	107
BspPI	GGATC	1 cut(s)	228
BspQI	GCTCTTC	3 cut(s)	270, 901, 1238
BspT104I	TTCGAA	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	1021
BsrI	ACTGG	1 cut(s)	668
BssECI	CCNNGG	3 cut(s)	352, 1027, 1182
BssMI	GATC	3 cut(s)	233, 436, 1285
BssT1I	CCWWGG	2 cut(s)	1027, 1182
Bst2UI	CCWGG	2 cut(s)	196, 960
Bst4CI	ACNGT	5 cut(s)	353, 845, 1169, 1175, 1303
Bst6I	CTCTTC	6 cut(s)	270, 293, 901, 982, 1038, 1238
BstAPI	GCANNNNNTGC	1 cut(s)	99
BstBI	TTCGAA	1 cut(s)	490
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	4 cut(s)	228, 447, 1034, 1335
BstDSI	CCRYGG	2 cut(s)	352, 1027
BstF5I	GGATG	3 cut(s)	114, 316, 1156
BstFNI	CGCG	1 cut(s)	1226
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	3 cut(s)	236, 439, 1288
BstMAI	GTCTC	3 cut(s)	63, 295, 1040
BstMBI	GATC	3 cut(s)	233, 436, 1285
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	2 cut(s)	196, 960
BstNSI	RCATGY	4 cut(s)	461, 605, 689, 889
BstSCI	CCNGG	2 cut(s)	194, 958
BstUI	CGCG	1 cut(s)	1226
BstV1I	GCAGC	1 cut(s)	1126
BstV2I	GAAGAC	3 cut(s)	20, 51, 242
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
BsuI	GTATCC	1 cut(s)	1137
BsuRI	GGCC	5 cut(s)	75, 194, 926, 1089, 1264
BtgI	CCRYGG	2 cut(s)	352, 1027
BtgZI	GCGATG	1 cut(s)	372
BtsCI	GGATG	3 cut(s)	114, 316, 1156
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	5 cut(s)	381, 1174, 1180, 1219, 1308
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	192
CciI	TCATGA	1 cut(s)	547
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	2 cut(s)	705, 1263
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	895
CspCI	CAANNNNNGTGG	4 cut(s)	334, 369, 412, 447
CviQI	GTAC	1 cut(s)	895
DdeI	CTNAG	4 cut(s)	228, 447, 1034, 1335
DpnI	GATC	3 cut(s)	235, 438, 1287
DpnII	GATC	3 cut(s)	233, 436, 1285
EaeI	YGGCCR	2 cut(s)	73, 192
Eam1104I	CTCTTC	6 cut(s)	270, 293, 901, 982, 1038, 1238
EarI	CTCTTC	6 cut(s)	270, 293, 901, 982, 1038, 1238
Eco130I	CCWWGG	2 cut(s)	1027, 1182
Eco47I	GGWCC	1 cut(s)	705
Eco57I	CTGAAG	3 cut(s)	236, 963, 1263
Eco88I	CYCGRG	1 cut(s)	553
EcoRII	CCWGG	2 cut(s)	194, 958
EcoT14I	CCWWGG	2 cut(s)	1027, 1182
ErhI	CCWWGG	2 cut(s)	1027, 1182
Esp3I	CGTCTC	1 cut(s)	63
FalI	AAGNNNNNCTT	2 cut(s)	1312, 1344
FaqI	GGGAC	1 cut(s)	691
FauNDI	CATATG	1 cut(s)	800
FblI	GTMKAC	1 cut(s)	585
Fnu4HI	GCNGC	2 cut(s)	805, 1115
FokI	GGATG	3 cut(s)	101, 323, 1163
Fsp4HI	GCNGC	2 cut(s)	805, 1115
FspBI	CTAG	2 cut(s)	335, 861
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	2 cut(s)	805, 1115
HaeII	RGCGCY	1 cut(s)	139
HaeIII	GGCC	5 cut(s)	75, 194, 926, 1089, 1264
HgaI	GACGC	1 cut(s)	45
HhaI	GCGC	1 cut(s)	138
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HincII	GTYRAC	2 cut(s)	286, 369
HindII	GTYRAC	2 cut(s)	286, 369
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	5 cut(s)	199, 551, 608, 1178, 1296
HphI	GGTGA	3 cut(s)	446, 671, 1305
Hpy166II	GTNNAC	7 cut(s)	286, 369, 403, 526, 586, 683, 691
Hpy188I	TCNGA	4 cut(s)	618, 1141, 1285, 1338
Hpy188III	TCNNGA	7 cut(s)	33, 164, 254, 548, 1094, 1193, 1241
Hpy8I	GTNNAC	7 cut(s)	286, 369, 403, 526, 586, 683, 691
HpyAV	CCTTC	5 cut(s)	13, 18, 605, 1100, 1141
HpyCH4III	ACNGT	5 cut(s)	353, 845, 1169, 1175, 1303
HpyCH4IV	ACGT	1 cut(s)	1259
HpyCH4V	TGCA	8 cut(s)	93, 102, 379, 418, 577, 755, 761, 1292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	4 cut(s)	228, 447, 1034, 1335
HpySE526I	ACGT	1 cut(s)	1259
HspAI	GCGC	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	233, 436, 1285
LguI	GCTCTTC	3 cut(s)	270, 901, 1238
LmnI	GCTCC	2 cut(s)	127, 867
Lsp1109I	GCAGC	1 cut(s)	1126
LweI	GCATC	5 cut(s)	301, 586, 742, 748, 919
MaeI	CTAG	2 cut(s)	335, 861
MaeII	ACGT	1 cut(s)	1259
MaeIII	GTNAC	3 cut(s)	453, 659, 1169
MalI	GATC	3 cut(s)	235, 438, 1287
MboI	GATC	3 cut(s)	233, 436, 1285
MfeI	CAATTG	2 cut(s)	51, 1203
MflI	RGATCY	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	1233
MlsI	TGGCCA	1 cut(s)	194
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	2 cut(s)	545, 1290
MmeI	TCCRAC	1 cut(s)	845
MnlI	CCTC	9 cut(s)	128, 149, 247, 555, 705, 916, 985, 1049, 1248
Mox20I	TGGCCA	1 cut(s)	194
MroXI	GAANNNNTTC	3 cut(s)	28, 910, 996
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	2 cut(s)	633, 1008
MslI	CAYNNNNRTG	3 cut(s)	423, 766, 1026
Msp20I	TGGCCA	1 cut(s)	194
MspR9I	CCNGG	2 cut(s)	196, 960
MunI	CAATTG	2 cut(s)	51, 1203
Mva1269I	GAATGC	1 cut(s)	1329
MvaI	CCWGG	2 cut(s)	196, 960
MvnI	CGCG	1 cut(s)	1226
MwoI	GCNNNNNNNGC	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	1027
NdeI	CATATG	1 cut(s)	800
NdeII	GATC	3 cut(s)	233, 436, 1285
NlaIV	GGNNCC	2 cut(s)	707, 1344
NmuCI	GTSAC	2 cut(s)	659, 1169
NspI	RCATGY	4 cut(s)	461, 605, 689, 889
NspV	TTCGAA	1 cut(s)	490
OliI	CACNNNNGTG	1 cut(s)	766
PaeR7I	CTCGAG	1 cut(s)	553
PagI	TCATGA	1 cut(s)	547
PciI	ACATGT	4 cut(s)	457, 601, 685, 885
PciSI	GCTCTTC	3 cut(s)	270, 901, 1238
PctI	GAATGC	1 cut(s)	1329
PdmI	GAANNNNTTC	3 cut(s)	28, 910, 996
PfeI	GAWTC	3 cut(s)	199, 608, 1178
PkrI	GCNGC	2 cut(s)	806, 1116
PleI	GAGTC	2 cut(s)	545, 1290
PpsI	GAGTC	2 cut(s)	545, 1290
PscI	ACATGT	4 cut(s)	457, 601, 685, 885
Psp6I	CCWGG	2 cut(s)	194, 958
PspGI	CCWGG	2 cut(s)	194, 958
PspN4I	GGNNCC	2 cut(s)	707, 1344
PspPI	GGNCC	2 cut(s)	705, 1263
PspXI	VCTCGAGB	1 cut(s)	553
PsuI	RGATCY	1 cut(s)	233
RsaI	GTAC	1 cut(s)	896
RsaNI	GTAC	1 cut(s)	895
RseI	CAYNNNNRTG	3 cut(s)	423, 766, 1026
SapI	GCTCTTC	3 cut(s)	270, 901, 1238
SaqAI	TTAA	2 cut(s)	633, 1008
SatI	GCNGC	2 cut(s)	805, 1115
Sau3AI	GATC	3 cut(s)	233, 436, 1285
Sau96I	GGNCC	2 cut(s)	705, 1263
SchI	GAGTC	2 cut(s)	545, 1290
ScrFI	CCNGG	2 cut(s)	196, 960
SduI	GDGCHC	1 cut(s)	1233
SfaNI	GCATC	5 cut(s)	301, 586, 742, 748, 919
Sfr274I	CTCGAG	1 cut(s)	553
SfuI	TTCGAA	1 cut(s)	490
SinI	GGWCC	1 cut(s)	705
SlaI	CTCGAG	1 cut(s)	553
SmiMI	CAYNNNNRTG	3 cut(s)	423, 766, 1026
SmlI	CTYRAG	1 cut(s)	553
SmoI	CTYRAG	1 cut(s)	553
SpeI	ACTAGT	1 cut(s)	860
SsiI	CCGC	5 cut(s)	372, 657, 804, 1158, 1226
SspMI	CTAG	2 cut(s)	335, 861
StyD4I	CCNGG	2 cut(s)	194, 958
StyI	CCWWGG	2 cut(s)	1027, 1182
TaaI	ACNGT	5 cut(s)	353, 845, 1169, 1175, 1303
TaiI	ACGT	1 cut(s)	1262
TaqI	TCGA	6 cut(s)	32, 490, 554, 571, 1000, 1041
TaqII	GACCGA	1 cut(s)	693
TauI	GCSGC	1 cut(s)	807
TfiI	GAWTC	3 cut(s)	199, 608, 1178
Tru1I	TTAA	2 cut(s)	633, 1008
Tru9I	TTAA	2 cut(s)	633, 1008
TscAI	CASTG	5 cut(s)	381, 1174, 1180, 1219, 1308
TseFI	GTSAC	2 cut(s)	659, 1169
TseI	GCWGC	1 cut(s)	1114
Tsp45I	GTSAC	2 cut(s)	659, 1169
TspDTI	ATGAA	1 cut(s)	1167
TspRI	CASTG	5 cut(s)	381, 1174, 1180, 1219, 1308
VpaK11BI	GGWCC	1 cut(s)	705
XapI	RAATTY	3 cut(s)	513, 1106, 1119
XceI	RCATGY	4 cut(s)	461, 605, 689, 889
XhoI	CTCGAG	1 cut(s)	553
XmiI	GTMKAC	1 cut(s)	585
XmnI	GAANNNNTTC	3 cut(s)	28, 910, 996
XspI	CTAG	2 cut(s)	335, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.