Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006698

Physical Location & Seq

Genomic Coordinates Forward (+)

53746682 .. 53751609

Gene Structure 4928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0438700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2580 bp

ATGGAAAGGGAGGAAGGCGATTTTATTAGTATTGTTGAGGAAAGCATAGATTTTGGAGTTGAAACAAACAATAGTTTGGACTTGAATGTAGAGCAGGACTGTCACAACCTGAAAATTGTTCATGGCAATGGCACTGTGTCCAATGTATCATCTACAAATGACCACAGTGTCGATGCAGTTGTGAAAGTTGGTACAGAGTTTGAGTCTGATGAGCATGCTTACAGGTGTTATAATAAGTATGCTAAGTTGGTGGGTTTCAATGTTCGGAAAGATTGGGTGAATAGGAGTAAGGTACATGGTCAGGTGGTATCTAGGAAGTTCACTTGTTCTAAACAGGGTTATCGGCGGAGGGATAAAAGGGATGTTACTGTAAAGAAACATCGAAAGGAAACTAGAACTGGTTGCCTGGCGCATATGGTCATTACTCATCAACCTGATGGTAAATATCGGGTTTCACATATTGAAGAACAACACAATCATGACAATTTAAACGCAAGTATGGCTCAAGTATTACCACTGCAGAGGGAATCCAGTATTTCTCAAGCTGCTGATGCTGAACTGGTAGAAGGTACCAAAGATTTCAGAACACTGTCAAAATTGGCATCTGAATCGATGAATAGACGGTTTAGAGTAAGGGAATCTCTCGATAATGTTTCTTTAGGTTATAACAATCATCTTCAATCTGAAAGGACCAGAGATATGAAGAAGGGAGAAGTTGGACGTTTGCTGCATTACTTTCAAAGGCAACATGTTGAAAACCCATCCTTTTTTTATGCATTACAGGTTGATACTGATGATAAAGTTTGTAACATCTTTTGGGCCGATGATAAGATGGTATCAGATTATGATTATTTTGGGGATGTGGTTTGTCTGGACACAATTTGCAGAACAGACAAGAATTGTCTCCCATTTGTACAGTTTATAGGAGTAAACCATCACAAACAGGTGCTGATCTTTGCTGCCGCACTTTTGTATGATGACACCATGGAATCTTACAAGTGGCTATTTCAAACCTTCTTGGAAGCAATGTCAGGGAAGAAACCAAGGATCATTCTAACTGATCAAGATGCAACAATTGTTGAGGTAATCGATTCAGTCTTACCAGAAACAGACCATCGTATATGCACATGGCAAATGTACGAAAATGCTCTCAAACACATTAGCCCCATGGTAAATGATACCGGGTCTTTTGCCAATGATTTCAAGAGATGTATATACGACCACAAAGATGAAGATGATTTTGTTTCTGCTTGGGGGGATATGCTAGATAAATATGGTCTTCAGCAGAATGACTGGTTAAAATGGATGTTTAGAGCACGAGAGAAATGGGCTGTGGTGTATGGTAGGAATACTATTTTTGTTGACAAAGGCGCACATTTGGTCGAAAGTTTATTTAATGATCTGAGAAGTTGCCTATACTCTGACACTACTGTGCTTCAATTCTTTAAGCATTACGAAAGGATGGTGGATGAGCAACGGTCCAAAGAAATAGAAGCTAGCGATGAAATGAACAGCTGTTTGCCAAGGCTAATGGGGAATGTGGTTATGTTAAAGCATGCAAGTAATGTATACACCTCAAGGGCATTTGAAGTATTTCAGCAAGGATATGAGAAGTGTTTAAATGTTGTTGTTAACCAATGTAGTGAGAATGGGTCATTGTTTGAGTACAGAGCTAAAACATTTGGGAAAACTCAAGAACACAGCGTCAGATTCTGTTCCTCTGATGGTACAGTTATATGCAGTTGTAAGAAATTTGAGAGTGTTGGGTTTCTATGTAGCCATGCCCTTAAAGTGCTGGATCACAGGAATATAAAGGTACTCCCCGCCAAATATGTCTTGAAGAGATGGACAAAAGATGCAAGGTTAGGGATTGCAAGACCGAGTGATGTCTCCACCGACAATGATAACCCTAAGCTTATTGTGGCAAGCCGTTACAAAGATCTTAGCCACAGAATTCTGATGTTATCTACCAGGGCTTCTGAATCTGGGGAAGCATTTCAATTCGCTGTTAGACAACTCGACCAAGTGATGGACGGGGTTGAGAAAATTTTGACATTAAAACCTGAGGATGCTCAAGCTGTCACGTCAAGCAGCACAGGTACAACTACTTCTGATAATGAGCATGCAGAAACTTTTCTAGATGAGAATGCTTTTGAGAATCAGGGTGAGAATGGAGTAAAAGGAGCAAACGAACAAGGGAGTGCTGTCCTCGACAGAGGTGAATTAATGAATGTAAATGGAAACTTCTCTAGCACAAACAGAATTCAGATTTCAGATGCATCCCCGCAAAGTAATCATTCCTACATTTCTTCGGAACCCTTAACCGGAAATCCCATTACACGGGGTTTGTACACTTTTGAAGAGAACCCTGTAGTCAACTGCACGTACGCGCAAGATAATGCCATCTTGTTTCGACCTCCAAACATCTTTCCTAACCAACACGATTCACCTTCCCAATTGCAATTGCTTCAGGAACCTCTTATCAATGTCACATACCAAGAACCCATGTCTGAACTGAGGCAGGCAATGGATCTCGATCTCGATCTCCACCCTCCACATTCACCTTCATTTTTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

859

Amino Acids

98.17

Weight (kDa)

5.73

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	77 - 161	2e-22	FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like	PF21056	257 - 370	4.4e-09	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	288 - 382	4.8e-23	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54130
fragaria_vesca	FvH4_7g33080 FvH4_7g33080 FvH4_7g33080 FvH4_7g33080
malus_domestica	MD01G1230000.v1.1 MD01G1230100.v1.1 MD07G1301900.v1.1
prunus_persica	Prupe.2G320700_v2.0.a1 Prupe.2G320700_v2.0.a1 Prupe.2G320700_v2.0.a1 Prupe.2G320700_v2.0.a1
pyrus_communis	pycom01g23810 pycom07g27500 pycom07g27510
rosa_chinensis	RchiOBHm_Chr1g0383111
rosa_laevigata	RLG00000026129
rosa_multiflora	Rmu_sc0008563.1_g000012
rosa_roxburghii	Rroxscaffold_4G00277580
rosa_rugosa	Rorug01G0438700 Rorug01G0438700
rosa_samantha	Rh1AG464300 Rh1BG421600 Rh1CG435000 Rh1DG454200
rosa_wichuraiana	Rw1G040790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	231, 666
AasI	GACNNNNNNGTC	1 cut(s)	167
Acc65I	GGTACC	1 cut(s)	569
AccB1I	GGYRCC	1 cut(s)	569
AccB7I	CCANNNNNTGG	1 cut(s)	2029
AccI	GTMKAC	1 cut(s)	1569
AccII	CGCG	1 cut(s)	2390
AciI	CCGC	4 cut(s)	346, 963, 1824, 2285
AclWI	GGATC	3 cut(s)	1055, 1806, 2538
AcsI	RAATTY	4 cut(s)	1751, 1953, 2046, 2262
AcuI	CTGAAG	2 cut(s)	1265, 2453
AfiI	CCNNNNNNNGG	3 cut(s)	2029, 2324, 2340
AflIII	ACRYGT	1 cut(s)	748
AjiI	CACGTC	1 cut(s)	2085
AjnI	CCWGG	2 cut(s)	405, 1970
AleI	CACNNNNGTG	1 cut(s)	1430
AluBI	AGCT	6 cut(s)	545, 1496, 1515, 1673, 1915, 2078
AluI	AGCT	6 cut(s)	545, 1496, 1515, 1673, 1915, 2078
Alw21I	GWGCWC	1 cut(s)	1318
Alw26I	GTCTC	2 cut(s)	908, 1894
AlwI	GGATC	3 cut(s)	1055, 1806, 2538
AlwNI	CAGNNNCTG	2 cut(s)	949, 1713
AoxI	GGCC	1 cut(s)	819
ApeKI	GCWGC	4 cut(s)	545, 727, 959, 2091
ApoI	RAATTY	4 cut(s)	1751, 1953, 2046, 2262
AseI	ATTAAT	1 cut(s)	2225
Asp700I	GAANNNNTTC	3 cut(s)	1593, 1995, 2133
Asp718I	GGTACC	1 cut(s)	569
AspLEI	GCGC	3 cut(s)	412, 1373, 2392
AspS9I	GGNCC	3 cut(s)	690, 819, 1479
AsuC2I	CCSGG	1 cut(s)	1183
AsuHPI	GGTGA	5 cut(s)	289, 2177, 2231, 2439, 2553
AsuNHI	GCTAGC	1 cut(s)	1496
AvaII	GGWCC	2 cut(s)	690, 1479
AxyI	CCTNAGG	1 cut(s)	2064
BanI	GGYRCC	1 cut(s)	569
BarI	GAAGNNNNNNTAC	2 cut(s)	2092, 2124
BauI	CACGAG	1 cut(s)	1317
BbsI	GAAGAC	1 cut(s)	1271
Bbv12I	GWGCWC	1 cut(s)	1318
BbvI	GCAGC	4 cut(s)	532, 714, 946, 2103
BceAI	ACGGC	1 cut(s)	1914
BcgI	CGANNNNNNTGC	2 cut(s)	591, 625
BciT130I	CCWGG	2 cut(s)	407, 1972
BclI	TGATCA	1 cut(s)	1060
BcnI	CCSGG	1 cut(s)	1183
BcoDI	GTCTC	2 cut(s)	908, 1894
BfaI	CTAG	6 cut(s)	312, 393, 1265, 1497, 2138, 2250
BfmI	CTRYAG	2 cut(s)	518, 2370
BglII	AGATCT	1 cut(s)	1939
BisI	GCNGC	5 cut(s)	546, 728, 960, 963, 2092
BlsI	GCNGC	5 cut(s)	547, 729, 961, 964, 2093
Bme1390I	CCNGG	3 cut(s)	407, 1183, 1972
Bme18I	GGWCC	2 cut(s)	690, 1479
BmgBI	CACGTC	1 cut(s)	2085
BmgT120I	GGNCC	3 cut(s)	690, 819, 1479
BmiI	GGNNCC	3 cut(s)	571, 2316, 2475
BmrFI	CCNGG	3 cut(s)	407, 1183, 1972
BmsI	GCATC	8 cut(s)	163, 541, 611, 1057, 1846, 2059, 2266, 2288
BmtI	GCTAGC	1 cut(s)	1500
BpiI	GAAGAC	1 cut(s)	1271
Bpu10I	CCTNAGC	1 cut(s)	1911
BpuEI	CTTGAG	5 cut(s)	489, 525, 1561, 1677, 2058
BpuMI	CCSGG	1 cut(s)	1183
Bsa29I	ATCGAT	2 cut(s)	611, 1089
BsaAI	YACGTR	1 cut(s)	2385
BsaBI	GATNNNNATC	2 cut(s)	2535, 2541
BsaJI	CCNNGG	5 cut(s)	984, 1043, 1167, 1523, 1971
BsaWI	WCCGGW	1 cut(s)	2324
Bsc4I	CCNNNNNNNGG	3 cut(s)	2029, 2324, 2340
Bse1I	ACTGG	4 cut(s)	403, 531, 564, 1298
Bse21I	CCTNAGG	1 cut(s)	2064
Bse3DI	GCAATG	3 cut(s)	133, 1032, 2532
Bse8I	GATNNNNATC	2 cut(s)	2535, 2541
BseBI	CCWGG	2 cut(s)	407, 1972
BseCI	ATCGAT	2 cut(s)	611, 1089
BseDI	CCNNGG	5 cut(s)	984, 1043, 1167, 1523, 1971
BseGI	GGATG	8 cut(s)	367, 761, 865, 1311, 1467, 1474, 2074, 2279
BseJI	GATNNNNATC	2 cut(s)	2535, 2541
BseLI	CCNNNNNNNGG	3 cut(s)	2029, 2324, 2340
BseMI	GCAATG	3 cut(s)	133, 1032, 2532
BseMII	CTCAG	3 cut(s)	1394, 2055, 2507
BseNI	ACTGG	4 cut(s)	403, 531, 564, 1298
BseXI	GCAGC	4 cut(s)	532, 714, 946, 2103
BsgI	GTGCAG	1 cut(s)	2365
Bsh1236I	CGCG	1 cut(s)	2390
BshFI	GGCC	1 cut(s)	821
BshNI	GGYRCC	1 cut(s)	569
BshVI	ATCGAT	2 cut(s)	611, 1089
BsiHKAI	GWGCWC	1 cut(s)	1318
BsiSI	CCGG	2 cut(s)	1182, 2325
BsiWI	CGTACG	1 cut(s)	2385
BslI	CCNNNNNNNGG	3 cut(s)	2029, 2324, 2340
BsmAI	GTCTC	2 cut(s)	908, 1894
BsmI	GAATGC	1 cut(s)	2152
BsnI	GGCC	1 cut(s)	821
Bsp1286I	GDGCHC	1 cut(s)	1318
Bsp1407I	TGTACA	2 cut(s)	913, 2349
Bsp143I	GATC	9 cut(s)	951, 1047, 1060, 1399, 1798, 1939, 2530, 2536, 2542
Bsp19I	CCATGG	2 cut(s)	984, 1167
BspACI	CCGC	4 cut(s)	346, 963, 1824, 2285
BspANI	GGCC	1 cut(s)	821
BspCNI	CTCAG	3 cut(s)	1395, 2056, 2508
BspDI	ATCGAT	2 cut(s)	611, 1089
BspFNI	CGCG	1 cut(s)	2390
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	3 cut(s)	571, 2316, 2475
BspMAI	CTGCAG	1 cut(s)	522
BspOI	GCTAGC	1 cut(s)	1500
BspPI	GGATC	3 cut(s)	1055, 1806, 2538
BspT107I	GGYRCC	1 cut(s)	569
BsrDI	GCAATG	3 cut(s)	133, 1032, 2532
BsrGI	TGTACA	2 cut(s)	913, 2349
BsrI	ACTGG	4 cut(s)	403, 531, 564, 1298
BssECI	CCNNGG	5 cut(s)	984, 1043, 1167, 1523, 1971
BssMI	GATC	9 cut(s)	951, 1047, 1060, 1399, 1798, 1939, 2530, 2536, 2542
BssNAI	GTATAC	1 cut(s)	1570
BssSI	CACGAG	1 cut(s)	1317
BssT1I	CCWWGG	4 cut(s)	984, 1043, 1167, 1523
Bst1107I	GTATAC	1 cut(s)	1570
Bst2BI	CACGAG	1 cut(s)	1317
Bst2UI	CCWGG	2 cut(s)	407, 1972
Bst6I	CTCTTC	2 cut(s)	1835, 2355
BstAUI	TGTACA	2 cut(s)	913, 2349
BstBAI	YACGTR	1 cut(s)	2385
BstC8I	GCNNGC	6 cut(s)	216, 1498, 1557, 1927, 2124, 2523
BstDEI	CTNAG	6 cut(s)	243, 1403, 1911, 1943, 2064, 2516
BstDSI	CCRYGG	2 cut(s)	984, 1167
BstF5I	GGATG	8 cut(s)	367, 761, 865, 1311, 1467, 1474, 2074, 2279
BstFNI	CGCG	1 cut(s)	2390
BstHHI	GCGC	3 cut(s)	412, 1373, 2392
BstKTI	GATC	9 cut(s)	954, 1050, 1063, 1402, 1801, 1942, 2533, 2539, 2545
BstMAI	GTCTC	2 cut(s)	908, 1894
BstMBI	GATC	9 cut(s)	951, 1047, 1060, 1399, 1798, 1939, 2530, 2536, 2542
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 551
BstNI	CCWGG	2 cut(s)	407, 1972
BstNSI	RCATGY	4 cut(s)	218, 752, 1559, 2126
BstSCI	CCNGG	3 cut(s)	405, 1181, 1970
BstSFI	CTRYAG	2 cut(s)	518, 2370
BstUI	CGCG	1 cut(s)	2390
BstV1I	GCAGC	4 cut(s)	532, 714, 946, 2103
BstV2I	GAAGAC	1 cut(s)	1271
BstX2I	RGATCY	2 cut(s)	1939, 2530
BstYI	RGATCY	2 cut(s)	1939, 2530
BstZ17I	GTATAC	1 cut(s)	1570
Bsu15I	ATCGAT	2 cut(s)	611, 1089
Bsu36I	CCTNAGG	1 cut(s)	2064
BsuRI	GGCC	1 cut(s)	821
BsuTUI	ATCGAT	2 cut(s)	611, 1089
BtgI	CCRYGG	2 cut(s)	984, 1167
BtgZI	GCGATG	1 cut(s)	1515
BtrI	CACGTC	1 cut(s)	2085
BtsCI	GGATG	8 cut(s)	367, 761, 865, 1311, 1467, 1474, 2074, 2279
BtsI	GCAGTG	1 cut(s)	515
BtsIMutI	CAGTG	4 cut(s)	132, 172, 515, 587
Cac8I	GCNNGC	6 cut(s)	216, 1498, 1557, 1927, 2124, 2523
CaiI	CAGNNNCTG	2 cut(s)	949, 1713
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	3 cut(s)	412, 1373, 2392
Cfr13I	GGNCC	3 cut(s)	690, 819, 1479
ClaI	ATCGAT	2 cut(s)	611, 1089
CseI	GACGC	1 cut(s)	1693
DdeI	CTNAG	6 cut(s)	243, 1403, 1911, 1943, 2064, 2516
DpnI	GATC	9 cut(s)	953, 1049, 1062, 1401, 1800, 1941, 2532, 2538, 2544
DpnII	GATC	9 cut(s)	951, 1047, 1060, 1399, 1798, 1939, 2530, 2536, 2542
DraI	TTTAAA	2 cut(s)	489, 1620
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
Eam1104I	CTCTTC	2 cut(s)	1835, 2355
EarI	CTCTTC	2 cut(s)	1835, 2355
EciI	GGCGGA	1 cut(s)	361
Eco130I	CCWWGG	4 cut(s)	984, 1043, 1167, 1523
Eco47I	GGWCC	2 cut(s)	690, 1479
Eco57I	CTGAAG	2 cut(s)	1265, 2453
Eco81I	CCTNAGG	1 cut(s)	2064
EcoRI	GAATTC	2 cut(s)	1953, 2262
EcoRII	CCWGG	2 cut(s)	405, 1970
EcoT14I	CCWWGG	4 cut(s)	984, 1043, 1167, 1523
EcoT22I	ATGCAT	2 cut(s)	778, 2281
ErhI	CCWWGG	4 cut(s)	984, 1043, 1167, 1523
FauI	CCCGC	2 cut(s)	1831, 2292
FauNDI	CATATG	1 cut(s)	414
FbaI	TGATCA	1 cut(s)	1060
FblI	GTMKAC	1 cut(s)	1569
Fnu4HI	GCNGC	5 cut(s)	546, 728, 960, 963, 2092
FokI	GGATG	8 cut(s)	374, 748, 872, 1318, 1474, 1481, 2081, 2266
Fsp4HI	GCNGC	5 cut(s)	546, 728, 960, 963, 2092
FspBI	CTAG	6 cut(s)	312, 393, 1265, 1497, 2138, 2250
GlaI	GCGC	3 cut(s)	411, 1372, 2391
GluI	GCNGC	5 cut(s)	546, 728, 960, 963, 2092
HaeIII	GGCC	1 cut(s)	821
HapII	CCGG	2 cut(s)	1182, 2325
HgaI	GACGC	1 cut(s)	1693
HhaI	GCGC	3 cut(s)	412, 1373, 2392
Hin6I	GCGC	3 cut(s)	410, 1371, 2390
HinP1I	GCGC	3 cut(s)	410, 1371, 2390
HincII	GTYRAC	3 cut(s)	1363, 1633, 2377
HindII	GTYRAC	3 cut(s)	1363, 1633, 2377
HindIII	AAGCTT	1 cut(s)	1913
HpaI	GTTAAC	1 cut(s)	1633
HpaII	CCGG	2 cut(s)	1182, 2325
HphI	GGTGA	5 cut(s)	289, 2177, 2231, 2439, 2553
Hpy166II	GTNNAC	7 cut(s)	321, 931, 1363, 1570, 1633, 2352, 2377
Hpy8I	GTNNAC	7 cut(s)	321, 931, 1363, 1570, 1633, 2352, 2377
HpyAV	CCTTC	6 cut(s)	8, 560, 700, 1024, 2460, 2574
HpyCH4IV	ACGT	3 cut(s)	721, 2084, 2384
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 551
HpyF3I	CTNAG	6 cut(s)	243, 1403, 1911, 1943, 2064, 2516
HpySE526I	ACGT	3 cut(s)	721, 2084, 2384
HspAI	GCGC	3 cut(s)	410, 1371, 2390
KpnI	GGTACC	1 cut(s)	573
Ksp22I	TGATCA	1 cut(s)	1060
KspAI	GTTAAC	1 cut(s)	1633
Kzo9I	GATC	9 cut(s)	951, 1047, 1060, 1399, 1798, 1939, 2530, 2536, 2542
LmnI	GCTCC	1 cut(s)	2183
Lsp1109I	GCAGC	4 cut(s)	532, 714, 946, 2103
LweI	GCATC	8 cut(s)	163, 541, 611, 1057, 1846, 2059, 2266, 2288
MaeI	CTAG	6 cut(s)	312, 393, 1265, 1497, 2138, 2250
MaeII	ACGT	3 cut(s)	721, 2084, 2384
MaeIII	GTNAC	6 cut(s)	101, 364, 806, 1931, 2080, 2488
MalI	GATC	9 cut(s)	953, 1049, 1062, 1401, 1800, 1941, 2532, 2538, 2544
MboI	GATC	9 cut(s)	951, 1047, 1060, 1399, 1798, 1939, 2530, 2536, 2542
MboII	GAAGA	9 cut(s)	476, 668, 715, 1048, 1244, 1271, 1852, 2301, 2372
MfeI	CAATTG	3 cut(s)	1074, 2456, 2462
MflI	RGATCY	2 cut(s)	1939, 2530
MhlI	GDGCHC	1 cut(s)	1318
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	697
Mph1103I	ATGCAT	2 cut(s)	778, 2281
MroXI	GAANNNNTTC	3 cut(s)	1593, 1995, 2133
MslI	CAYNNNNRTG	4 cut(s)	126, 477, 1227, 1430
MspA1I	CMGCKG	1 cut(s)	1515
MspI	CCGG	2 cut(s)	1182, 2325
MspR9I	CCNGG	3 cut(s)	407, 1183, 1972
MunI	CAATTG	3 cut(s)	1074, 2456, 2462
Mva1269I	GAATGC	1 cut(s)	2152
MvaI	CCWGG	2 cut(s)	407, 1972
MvnI	CGCG	1 cut(s)	2390
MwoI	GCNNNNNNNGC	2 cut(s)	500, 551
NciI	CCSGG	1 cut(s)	1183
NcoI	CCATGG	2 cut(s)	984, 1167
NdeI	CATATG	1 cut(s)	414
NdeII	GATC	9 cut(s)	951, 1047, 1060, 1399, 1798, 1939, 2530, 2536, 2542
NheI	GCTAGC	1 cut(s)	1496
NlaIV	GGNNCC	3 cut(s)	571, 2316, 2475
NmuCI	GTSAC	3 cut(s)	101, 2080, 2488
NsiI	ATGCAT	2 cut(s)	778, 2281
NspI	RCATGY	4 cut(s)	218, 752, 1559, 2126
OliI	CACNNNNGTG	1 cut(s)	1430
PaeI	GCATGC	3 cut(s)	218, 1559, 2126
PagI	TCATGA	1 cut(s)	478
PciI	ACATGT	1 cut(s)	748
PctI	GAATGC	1 cut(s)	2152
PdmI	GAANNNNTTC	3 cut(s)	1593, 1995, 2133
PfeI	GAWTC	9 cut(s)	527, 608, 638, 989, 1091, 1710, 1982, 2158, 2444
Pfl23II	CGTACG	1 cut(s)	2385
PflMI	CCANNNNNTGG	1 cut(s)	2029
PkrI	GCNGC	5 cut(s)	547, 729, 961, 964, 2093
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	2385
PscI	ACATGT	1 cut(s)	748
PshBI	ATTAAT	1 cut(s)	2225
PsiI	TTATAA	2 cut(s)	231, 666
Psp6I	CCWGG	2 cut(s)	405, 1970
PspGI	CCWGG	2 cut(s)	405, 1970
PspLI	CGTACG	1 cut(s)	2385
PspN4I	GGNNCC	3 cut(s)	571, 2316, 2475
PspPI	GGNCC	3 cut(s)	690, 819, 1479
PstI	CTGCAG	1 cut(s)	522
PstNI	CAGNNNCTG	2 cut(s)	949, 1713
PsuI	RGATCY	2 cut(s)	1939, 2530
PvuII	CAGCTG	1 cut(s)	1515
RseI	CAYNNNNRTG	4 cut(s)	126, 477, 1227, 1430
SatI	GCNGC	5 cut(s)	546, 728, 960, 963, 2092
Sau3AI	GATC	9 cut(s)	951, 1047, 1060, 1399, 1798, 1939, 2530, 2536, 2542
Sau96I	GGNCC	3 cut(s)	690, 819, 1479
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	3 cut(s)	407, 1183, 1972
SduI	GDGCHC	1 cut(s)	1318
SfaNI	GCATC	8 cut(s)	163, 541, 611, 1057, 1846, 2059, 2266, 2288
SfcI	CTRYAG	2 cut(s)	518, 2370
SinI	GGWCC	2 cut(s)	690, 1479
SmiMI	CAYNNNNRTG	4 cut(s)	126, 477, 1227, 1430
SmlI	CTYRAG	5 cut(s)	504, 540, 1576, 1692, 2073
SmoI	CTYRAG	5 cut(s)	504, 540, 1576, 1692, 2073
SphI	GCATGC	3 cut(s)	218, 1559, 2126
SsiI	CCGC	4 cut(s)	346, 963, 1824, 2285
SspMI	CTAG	6 cut(s)	312, 393, 1265, 1497, 2138, 2250
StyD4I	CCNGG	3 cut(s)	405, 1181, 1970
StyI	CCWWGG	4 cut(s)	984, 1043, 1167, 1523
TaiI	ACGT	3 cut(s)	724, 2087, 2387
TaqII	GACCGA	1 cut(s)	1894
TatI	WGTACW	3 cut(s)	913, 1665, 2349
TauI	GCSGC	1 cut(s)	965
TfiI	GAWTC	9 cut(s)	527, 608, 638, 989, 1091, 1710, 1982, 2158, 2444
TscAI	CASTG	4 cut(s)	139, 172, 522, 594
TseFI	GTSAC	3 cut(s)	101, 2080, 2488
TseI	GCWGC	4 cut(s)	545, 727, 959, 2091
Tsp45I	GTSAC	3 cut(s)	101, 2080, 2488
TspDTI	ATGAA	8 cut(s)	110, 629, 716, 1245, 1518, 1523, 2243, 2556
TspRI	CASTG	4 cut(s)	139, 172, 522, 594
Van91I	CCANNNNNTGG	1 cut(s)	2029
VpaK11BI	GGWCC	2 cut(s)	690, 1479
VspI	ATTAAT	1 cut(s)	2225
XapI	RAATTY	4 cut(s)	1751, 1953, 2046, 2262
XbaI	TCTAGA	1 cut(s)	2137
XceI	RCATGY	4 cut(s)	218, 752, 1559, 2126
XmiI	GTMKAC	1 cut(s)	1569
XmnI	GAANNNNTTC	3 cut(s)	1593, 1995, 2133
XspI	CTAG	6 cut(s)	312, 393, 1265, 1497, 2138, 2250
Zsp2I	ATGCAT	2 cut(s)	778, 2281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.