Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008563.1

Orthogroup ID

OG0006698

Physical Location & Seq

Genomic Coordinates Forward (+)

58311 .. 61121

Gene Structure 2811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008563.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

atgacgaagatgatgaagggtagggtgtcaagaattggaagctatgcaattgcttcttccattaaagatggccatcatcaacagccttgcattacctgcacaacattcaacatactcgctccaatttacaagcgcctaagccatgaggacccagattgtagggaaagcgatcacagagcttattggctggccaggaatcacatgattttggattgtttgttggctgagagatcttccattatttgtcttcaggaattctgggttgggaatgaagagctggtgaacatttatgagaagagacttggtgatgctggttatatcaattttaagctagggaggaccaacaaccgcggcgatggtttgctgaccgcggtgcataaggactactttagagttctaaattatcaagagttgcacttccatgattgtggagatcgtgttgctcagttgttacatgttgaattagcttgcccaatttcacagtttcaaaacaacgatattcggcaggaaatgcttattgtgaatacccatttgttatttcctcatgattcaagtttgtgtatagtacgattgcatcaggtgtacaaaatcctacaatatgtggaatcttatcagaaagagaaaaaacttaaccccatgcctatcattctctgtggtgactggaatggaagcaaacgtggacatgtttacaagtttcttaggtcccaggggtttgtatcttcttatgatactgctcatcattacaccgatgcagatgcacaaaagtgggttagccaccgaaaccatcggggaaacatatgtggggttgactttatatggcttctcaacccaaacagttaccggaaactgctaaaaacaagttggagtgaagcagtatttggcatgttcaagtatctactacgaagagcttcactgacagaaagtgatgcctttgcctttctgaaggctgacaaccctggtgattacattacctattctggcttctgtgaagccctccgacagcttaatttgactggtcattgccatggacttagccttgaagagaccaaggatttgtgggttcaagcagacatagatggcaatggtattcttgattacagagggtttcagcagcgaatttggaatccaacagatggtggtaatgacatctgggatgttggctccaatggtattcaggatcaagcaattggtttcagtataaaaaatgcagttcttttccctcctgaagcggagaaaggaacgtggcccgaagactactctctttctgatcatgcacgactcactgtggttttctcaccggtaagaatgccatgctctcagatgatcacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

443

Amino Acids

50.88

Weight (kDa)

6.69

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54130
fragaria_vesca	FvH4_7g33080 FvH4_7g33080 FvH4_7g33080 FvH4_7g33080
malus_domestica	MD01G1230000.v1.1 MD01G1230100.v1.1 MD07G1301900.v1.1
prunus_persica	Prupe.2G320700_v2.0.a1 Prupe.2G320700_v2.0.a1 Prupe.2G320700_v2.0.a1 Prupe.2G320700_v2.0.a1
pyrus_communis	pycom01g23810 pycom07g27500 pycom07g27510
rosa_chinensis	RchiOBHm_Chr1g0383111
rosa_laevigata	RLG00000026129
rosa_multiflora	Rmu_sc0008563.1_g000012
rosa_roxburghii	Rroxscaffold_4G00277580
rosa_rugosa	Rorug01G0438700 Rorug01G0438700
rosa_samantha	Rh1AG464300 Rh1BG421600 Rh1CG435000 Rh1DG454200
rosa_wichuraiana	Rw1G040790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	1133
AccII	CGCG	2 cut(s)	351, 371
AciI	CCGC	5 cut(s)	349, 351, 369, 371, 1229
AclWI	GGATC	1 cut(s)	1185
AcoI	YGGCCR	2 cut(s)	70, 189
AcsI	RAATTY	2 cut(s)	254, 1116
AcuI	CTGAAG	3 cut(s)	233, 962, 1245
AfaI	GTAC	2 cut(s)	567, 584
AfiI	CCNNNNNNNGG	1 cut(s)	1133
AflIII	ACRYGT	2 cut(s)	454, 682
AgeI	ACCGGT	1 cut(s)	1297
AgsI	TTSAA	7 cut(s)	109, 461, 488, 552, 889, 1040, 1064
AjnI	CCWGG	3 cut(s)	191, 705, 955
AjuI	GAANNNNNNNTTGG	4 cut(s)	246, 278, 861, 893
AleI	CACNNNNGTG	1 cut(s)	763
AluBI	AGCT	7 cut(s)	42, 179, 277, 331, 467, 908, 1003
AluI	AGCT	7 cut(s)	42, 179, 277, 331, 467, 908, 1003
Alw26I	GTCTC	2 cut(s)	292, 1037
AlwI	GGATC	1 cut(s)	1185
AoxI	GGCC	3 cut(s)	70, 189, 1244
ApeKI	GCWGC	1 cut(s)	1111
ApoI	RAATTY	2 cut(s)	254, 1116
ArsI	GACNNNNNNTTYG	2 cut(s)	1036, 1068
AsiGI	ACCGGT	1 cut(s)	1297
Asp700I	GAANNNNTTC	1 cut(s)	907
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	4 cut(s)	148, 339, 702, 1245
AsuHPI	GGTGA	5 cut(s)	292, 317, 668, 971, 1287
AvaII	GGWCC	3 cut(s)	148, 339, 702
BalI	TGGCCA	2 cut(s)	72, 191
BbsI	GAAGAC	2 cut(s)	239, 1257
BbvI	GCAGC	1 cut(s)	1123
BccI	CCATC	6 cut(s)	62, 81, 350, 792, 1070, 1127
BcgI	CGANNNNNNTGC	2 cut(s)	737, 771
BciT130I	CCWGG	3 cut(s)	193, 707, 957
BclI	TGATCA	2 cut(s)	1267, 1323
BcoDI	GTCTC	2 cut(s)	292, 1037
BfaI	CTAG	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	136
BfuAI	ACCTGC	1 cut(s)	104
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	2 cut(s)	352, 1112
BlsI	GCNGC	2 cut(s)	353, 1113
Bme1390I	CCNGG	3 cut(s)	193, 707, 957
Bme18I	GGWCC	3 cut(s)	148, 339, 702
BmgT120I	GGNCC	4 cut(s)	148, 339, 702, 1245
BmiI	GGNNCC	3 cut(s)	150, 704, 1162
BmrFI	CCNGG	3 cut(s)	193, 707, 957
BmsI	GCATC	5 cut(s)	298, 583, 739, 745, 916
BpiI	GAAGAC	2 cut(s)	239, 1257
Bpu10I	CCTNAGC	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	1037
BsaJI	CCNNGG	7 cut(s)	349, 369, 705, 706, 955, 1024, 1047
BsaWI	WCCGGW	2 cut(s)	840, 1297
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bsc4I	CCNNNNNNNGG	1 cut(s)	1133
Bse118I	RCCGGY	1 cut(s)	1297
Bse1I	ACTGG	2 cut(s)	665, 1018
Bse3DI	GCAATG	2 cut(s)	1018, 1087
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	3 cut(s)	193, 707, 957
BseDI	CCNNGG	7 cut(s)	349, 369, 705, 706, 955, 1024, 1047
BseGI	GGATG	1 cut(s)	1159
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	1133
BseMI	GCAATG	2 cut(s)	1018, 1087
BseMII	CTCAG	3 cut(s)	216, 458, 1331
BseNI	ACTGG	2 cut(s)	665, 1018
BseXI	GCAGC	1 cut(s)	1123
BsgI	GTGCAG	1 cut(s)	82
Bsh1236I	CGCG	2 cut(s)	351, 371
BshFI	GGCC	3 cut(s)	72, 191, 1246
BshTI	ACCGGT	1 cut(s)	1297
BsiSI	CCGG	2 cut(s)	841, 1298
BslFI	GGGAC	1 cut(s)	688
BslI	CCNNNNNNNGG	1 cut(s)	1133
BsmAI	GTCTC	2 cut(s)	292, 1037
BsmFI	GGGAC	1 cut(s)	688
BsmI	GAATGC	1 cut(s)	1311
BsnI	GGCC	3 cut(s)	72, 191, 1246
Bso31I	GGTCTC	1 cut(s)	1037
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	6 cut(s)	169, 230, 433, 1177, 1267, 1323
Bsp19I	CCATGG	1 cut(s)	1024
BspACI	CCGC	5 cut(s)	349, 351, 369, 371, 1229
BspANI	GGCC	3 cut(s)	72, 191, 1246
BspCNI	CTCAG	3 cut(s)	217, 457, 1330
BspFNI	CGCG	2 cut(s)	351, 371
BspHI	TCATGA	1 cut(s)	544
BspLI	GGNNCC	3 cut(s)	150, 704, 1162
BspMI	ACCTGC	1 cut(s)	104
BspPI	GGATC	1 cut(s)	1185
BspQI	GCTCTTC	2 cut(s)	267, 898
BspTNI	GGTCTC	1 cut(s)	1037
BsrDI	GCAATG	2 cut(s)	1018, 1087
BsrFI	RCCGGY	1 cut(s)	1297
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	2 cut(s)	665, 1018
BssAI	RCCGGY	1 cut(s)	1297
BssECI	CCNNGG	7 cut(s)	349, 369, 705, 706, 955, 1024, 1047
BssMI	GATC	6 cut(s)	169, 230, 433, 1177, 1267, 1323
BssT1I	CCWWGG	2 cut(s)	1024, 1047
Bst2UI	CCWGG	3 cut(s)	193, 707, 957
Bst4CI	ACNGT	3 cut(s)	483, 836, 1285
Bst6I	CTCTTC	4 cut(s)	267, 290, 898, 1035
BstAPI	GCANNNNNTGC	2 cut(s)	96, 511
BstAUI	TGTACA	1 cut(s)	582
BstC8I	GCNNGC	2 cut(s)	189, 469
BstDEI	CTNAG	6 cut(s)	137, 225, 444, 698, 1031, 1317
BstDSI	CCRYGG	3 cut(s)	349, 369, 1024
BstF5I	GGATG	1 cut(s)	1159
BstFNI	CGCG	2 cut(s)	351, 371
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	6 cut(s)	172, 233, 436, 1180, 1270, 1326
BstMAI	GTCTC	2 cut(s)	292, 1037
BstMBI	GATC	6 cut(s)	169, 230, 433, 1177, 1267, 1323
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 511
BstNI	CCWGG	3 cut(s)	193, 707, 957
BstNSI	RCATGY	3 cut(s)	458, 686, 886
BstSCI	CCNGG	3 cut(s)	191, 705, 955
BstUI	CGCG	2 cut(s)	351, 371
BstV1I	GCAGC	1 cut(s)	1123
BstV2I	GAAGAC	2 cut(s)	239, 1257
BstX2I	RGATCY	1 cut(s)	230
BstXI	CCANNNNNNTGG	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	230
BsuRI	GGCC	3 cut(s)	72, 191, 1246
BtgI	CCRYGG	3 cut(s)	349, 369, 1024
BtgZI	GCGATG	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	1159
BtsIMutI	CAGTG	2 cut(s)	911, 1281
BveI	ACCTGC	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	189, 469
CciI	TCATGA	1 cut(s)	544
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	1297
Cfr13I	GGNCC	4 cut(s)	148, 339, 702, 1245
Cfr42I	CCGCGG	2 cut(s)	352, 372
Csp6I	GTAC	2 cut(s)	566, 583
CspAI	ACCGGT	1 cut(s)	1297
CviQI	GTAC	2 cut(s)	566, 583
DdeI	CTNAG	6 cut(s)	137, 225, 444, 698, 1031, 1317
DpnI	GATC	6 cut(s)	171, 232, 435, 1179, 1269, 1325
DpnII	GATC	6 cut(s)	169, 230, 433, 1177, 1267, 1323
EaeI	YGGCCR	2 cut(s)	70, 189
Eam1104I	CTCTTC	4 cut(s)	267, 290, 898, 1035
EarI	CTCTTC	4 cut(s)	267, 290, 898, 1035
Eco130I	CCWWGG	2 cut(s)	1024, 1047
Eco31I	GGTCTC	1 cut(s)	1037
Eco47I	GGWCC	3 cut(s)	148, 339, 702
Eco57I	CTGAAG	3 cut(s)	233, 962, 1245
EcoO109I	RGGNCCY	2 cut(s)	148, 702
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	3 cut(s)	191, 705, 955
EcoT14I	CCWWGG	2 cut(s)	1024, 1047
ErhI	CCWWGG	2 cut(s)	1024, 1047
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	1 cut(s)	688
FauNDI	CATATG	1 cut(s)	797
FbaI	TGATCA	2 cut(s)	1267, 1323
Fnu4HI	GCNGC	2 cut(s)	352, 1112
FokI	GGATG	1 cut(s)	1166
Fsp4HI	GCNGC	2 cut(s)	352, 1112
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	2 cut(s)	352, 1112
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	3 cut(s)	72, 191, 1246
HapII	CCGG	2 cut(s)	841, 1298
HhaI	GCGC	1 cut(s)	135
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HincII	GTYRAC	1 cut(s)	808
HindII	GTYRAC	1 cut(s)	808
HinfI	GANTC	5 cut(s)	196, 548, 605, 1123, 1278
HpaII	CCGG	2 cut(s)	841, 1298
HphI	GGTGA	5 cut(s)	292, 317, 668, 971, 1287
Hpy166II	GTNNAC	5 cut(s)	283, 583, 680, 688, 808
Hpy188I	TCNGA	5 cut(s)	615, 942, 998, 1267, 1320
Hpy188III	TCNNGA	7 cut(s)	30, 251, 407, 545, 1091, 1175, 1223
Hpy8I	GTNNAC	5 cut(s)	283, 583, 680, 688, 808
HpyAV	CCTTC	2 cut(s)	10, 937
HpyCH4III	ACNGT	3 cut(s)	483, 836, 1285
HpyCH4IV	ACGT	2 cut(s)	676, 1241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 511
HpyF3I	CTNAG	6 cut(s)	137, 225, 444, 698, 1031, 1317
HpySE526I	ACGT	2 cut(s)	676, 1241
HspAI	GCGC	1 cut(s)	133
Ksp22I	TGATCA	2 cut(s)	1267, 1323
KspI	CCGCGG	2 cut(s)	352, 372
Kzo9I	GATC	6 cut(s)	169, 230, 433, 1177, 1267, 1323
LguI	GCTCTTC	2 cut(s)	267, 898
LmnI	GCTCC	2 cut(s)	124, 1166
Lsp1109I	GCAGC	1 cut(s)	1123
LweI	GCATC	5 cut(s)	298, 583, 739, 745, 916
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	2 cut(s)	676, 1241
MaeIII	GTNAC	3 cut(s)	450, 656, 836
MalI	GATC	6 cut(s)	171, 232, 435, 1179, 1269, 1325
MboI	GATC	6 cut(s)	169, 230, 433, 1177, 1267, 1323
MfeI	CAATTG	2 cut(s)	48, 1185
MflI	RGATCY	1 cut(s)	230
MlsI	TGGCCA	2 cut(s)	72, 191
MluNI	TGGCCA	2 cut(s)	72, 191
MlyI	GAGTC	1 cut(s)	1272
MmeI	TCCRAC	3 cut(s)	842, 1021, 1151
MnlI	CCTC	6 cut(s)	139, 330, 552, 1004, 1094, 1230
Mox20I	TGGCCA	2 cut(s)	72, 191
MroXI	GAANNNNTTC	1 cut(s)	907
MscI	TGGCCA	2 cut(s)	72, 191
MseI	TTAA	4 cut(s)	63, 327, 630, 1005
MslI	CAYNNNNRTG	4 cut(s)	420, 426, 763, 1023
Msp20I	TGGCCA	2 cut(s)	72, 191
MspA1I	CMGCKG	2 cut(s)	351, 371
MspI	CCGG	2 cut(s)	841, 1298
MspR9I	CCNGG	3 cut(s)	193, 707, 957
MunI	CAATTG	2 cut(s)	48, 1185
Mva1269I	GAATGC	1 cut(s)	1311
MvaI	CCWGG	3 cut(s)	193, 707, 957
MvnI	CGCG	2 cut(s)	351, 371
MwoI	GCNNNNNNNGC	2 cut(s)	96, 511
NcoI	CCATGG	1 cut(s)	1024
NdeI	CATATG	1 cut(s)	797
NdeII	GATC	6 cut(s)	169, 230, 433, 1177, 1267, 1323
NlaIV	GGNNCC	3 cut(s)	150, 704, 1162
NmuCI	GTSAC	1 cut(s)	656
NspI	RCATGY	3 cut(s)	458, 686, 886
OliI	CACNNNNGTG	1 cut(s)	763
PagI	TCATGA	1 cut(s)	544
PasI	CCCWGGG	1 cut(s)	706
PciI	ACATGT	2 cut(s)	454, 682
PciSI	GCTCTTC	2 cut(s)	267, 898
PctI	GAATGC	1 cut(s)	1311
PdmI	GAANNNNTTC	1 cut(s)	907
PfeI	GAWTC	4 cut(s)	196, 548, 605, 1123
PflMI	CCANNNNNTGG	1 cut(s)	1133
PinAI	ACCGGT	1 cut(s)	1297
PkrI	GCNGC	2 cut(s)	353, 1113
PleI	GAGTC	1 cut(s)	1272
PpsI	GAGTC	1 cut(s)	1272
PpuMI	RGGWCCY	2 cut(s)	148, 702
PscI	ACATGT	2 cut(s)	454, 682
Psp5II	RGGWCCY	2 cut(s)	148, 702
Psp6I	CCWGG	3 cut(s)	191, 705, 955
PspGI	CCWGG	3 cut(s)	191, 705, 955
PspN4I	GGNNCC	3 cut(s)	150, 704, 1162
PspPI	GGNCC	4 cut(s)	148, 339, 702, 1245
PspPPI	RGGWCCY	2 cut(s)	148, 702
PsuI	RGATCY	1 cut(s)	230
RsaI	GTAC	2 cut(s)	567, 584
RsaNI	GTAC	2 cut(s)	566, 583
RseI	CAYNNNNRTG	4 cut(s)	420, 426, 763, 1023
SacII	CCGCGG	2 cut(s)	352, 372
SapI	GCTCTTC	2 cut(s)	267, 898
SaqAI	TTAA	4 cut(s)	63, 327, 630, 1005
SatI	GCNGC	2 cut(s)	352, 1112
Sau3AI	GATC	6 cut(s)	169, 230, 433, 1177, 1267, 1323
Sau96I	GGNCC	4 cut(s)	148, 339, 702, 1245
SchI	GAGTC	1 cut(s)	1272
ScrFI	CCNGG	3 cut(s)	193, 707, 957
SfaNI	GCATC	5 cut(s)	298, 583, 739, 745, 916
Sfr303I	CCGCGG	2 cut(s)	352, 372
SgrBI	CCGCGG	2 cut(s)	352, 372
SinI	GGWCC	3 cut(s)	148, 339, 702
SmiMI	CAYNNNNRTG	4 cut(s)	420, 426, 763, 1023
SsiI	CCGC	5 cut(s)	349, 351, 369, 371, 1229
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	3 cut(s)	191, 705, 955
StyI	CCWWGG	2 cut(s)	1024, 1047
TaaI	ACNGT	3 cut(s)	483, 836, 1285
TaiI	ACGT	2 cut(s)	679, 1244
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	4 cut(s)	196, 548, 605, 1123
Tru1I	TTAA	4 cut(s)	63, 327, 630, 1005
Tru9I	TTAA	4 cut(s)	63, 327, 630, 1005
TscAI	CASTG	2 cut(s)	918, 1288
TseFI	GTSAC	1 cut(s)	656
TseI	GCWGC	1 cut(s)	1111
Tsp45I	GTSAC	1 cut(s)	656
TspDTI	ATGAA	2 cut(s)	29, 285
TspRI	CASTG	2 cut(s)	918, 1288
Van91I	CCANNNNNTGG	1 cut(s)	1133
VpaK11BI	GGWCC	3 cut(s)	148, 339, 702
XapI	RAATTY	2 cut(s)	254, 1116
XceI	RCATGY	3 cut(s)	458, 686, 886
XmnI	GAANNNNTTC	1 cut(s)	907
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.